Wall clock time and date at job start Tue Mar 31 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47634 * 111.00212 * 298.89031 * 16 15 13 18 18 C 1.50814 * 108.05189 * 150.35004 * 17 16 15 19 19 C 1.53817 * 111.62615 * 95.05623 * 18 17 16 20 20 C 1.54170 * 111.96876 * 319.04586 * 19 18 17 21 21 H 1.08994 * 108.77741 * 79.23610 * 20 19 18 22 22 C 1.53004 * 108.85417 * 197.68016 * 20 19 18 23 23 C 1.50759 * 112.60872 * 318.48120 * 20 19 18 24 24 C 1.39778 * 110.99665 * 169.99990 * 16 15 13 25 25 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 27 27 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 29 29 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 30 30 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 31 31 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 32 32 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 34 34 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 35 35 H 1.09001 * 109.74505 * 269.98450 * 17 16 15 36 36 H 1.08999 * 109.74424 * 30.70601 * 17 16 15 37 37 H 1.09001 * 109.05395 * 334.50346 * 18 17 16 38 38 H 1.09002 * 108.99249 * 215.57161 * 18 17 16 39 39 H 1.09003 * 108.98480 * 198.40098 * 19 18 17 40 40 H 1.09003 * 108.98094 * 79.67840 * 19 18 17 41 41 H 1.08999 * 109.46983 * 183.08028 * 22 20 19 42 42 H 1.08999 * 109.47240 * 303.08467 * 22 20 19 43 43 H 1.09005 * 109.47295 * 63.08563 * 22 20 19 44 44 H 1.09000 * 109.54592 * 333.15875 * 23 20 19 45 45 H 1.09000 * 109.62223 * 212.93054 * 23 20 19 46 46 H 1.09002 * 109.02373 * 309.71358 * 24 16 15 47 47 H 1.08998 * 109.02796 * 68.53722 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.7319 2.6049 3.5579 18 6 3.8449 3.9789 4.1692 19 6 4.2046 3.9070 5.6630 20 6 3.4416 2.7794 6.3863 21 1 3.9332 1.8303 6.1733 22 6 3.4939 3.0352 7.8939 23 6 1.9992 2.6880 5.9575 24 6 1.8805 1.6671 4.8048 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 3.6747 3.5148 -4.4447 33 1 0.9443 1.0114 2.5302 34 1 2.6227 0.4186 2.5299 35 1 4.3262 1.8956 4.1339 36 1 4.0848 2.6302 2.5269 37 1 2.8927 4.4976 4.0572 38 1 4.6185 4.5386 3.6435 39 1 3.9594 4.8594 6.1330 40 1 5.2757 3.7300 5.7615 41 1 3.0042 2.2149 8.4188 42 1 4.5332 3.1032 8.2151 43 1 2.9813 3.9698 8.1220 44 1 1.6577 3.6651 5.6158 45 1 1.3873 2.3614 6.7984 46 1 0.8392 1.3597 4.7085 47 1 2.4872 0.7929 5.0407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119680499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:59 Heat of formation + Delta-G solvation = -39.349040 kcal Electronic energy + Delta-G solvation = -23629.756943 eV Core-core repulsion = 20426.216525 eV Total energy + Delta-G solvation = -3203.540418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92931 -38.42912 -35.48856 -34.89745 -32.77622 -32.28544 -30.09195 -29.55552 -27.53132 -26.26533 -25.02238 -23.17647 -22.97504 -22.27254 -20.68234 -19.10310 -18.22188 -16.58018 -16.33568 -15.95399 -15.53468 -15.09936 -15.00031 -14.54886 -14.33288 -13.94961 -13.35412 -13.27624 -13.22358 -12.90952 -12.74295 -12.54975 -12.42814 -11.96775 -11.79596 -11.69758 -11.55695 -11.29539 -11.17494 -10.95138 -10.87241 -10.69240 -10.63251 -10.47597 -10.41518 -10.22946 -10.12602 -10.03507 -9.57596 -8.74775 -8.41754 -7.92858 -7.58473 -6.02193 -4.06750 3.30310 3.37795 3.41041 3.52237 3.78624 4.27245 4.46839 4.70683 4.79216 4.84492 5.08846 5.20367 5.30984 5.31691 5.32733 5.40626 5.45409 5.51912 5.53498 5.57228 5.63470 5.69132 5.73250 5.79953 5.85571 5.88229 5.97755 6.01761 6.06208 6.12281 6.22930 6.25813 6.28559 6.37101 6.51146 6.60555 6.69918 7.08050 7.29133 7.50140 7.60632 7.66583 7.95185 8.26885 8.50450 8.94093 9.19707 9.58589 11.05766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.004442 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.316898 B = 6302.621343 C = 7298.069835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.522 6.522 15 C 0.042 3.958 16 N -0.539 5.539 17 C 0.069 3.931 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.093 4.093 21 H 0.062 0.938 22 C -0.147 4.147 23 C -0.112 4.112 24 C 0.078 3.922 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -5.457 18.229 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.088 4.088 16 N -0.263 5.263 17 C -0.058 4.058 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.112 4.112 21 H 0.080 0.920 22 C -0.204 4.204 23 C -0.149 4.149 24 C -0.051 4.051 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.623 -4.334 18.005 18.870 hybrid contribution 1.353 -1.005 -0.319 1.716 sum -2.269 -5.339 17.686 18.613 Atomic orbital electron populations 1.22223 0.96856 1.01290 1.02359 1.21389 0.93477 0.84409 1.02468 1.48267 1.64199 1.13144 1.07742 1.19232 0.96091 0.93662 0.78161 1.21476 0.96980 1.31687 1.06144 0.92552 1.24930 0.97754 0.94984 0.96444 1.69944 1.35531 1.33594 1.14291 0.86470 0.84779 0.78030 0.78290 1.19875 1.21003 1.20895 1.20155 0.78846 0.87150 0.84765 1.90652 1.44687 1.17661 1.86777 1.22021 1.01952 0.94083 0.90790 1.58396 1.20995 1.44560 1.02377 1.21893 0.85761 0.95754 1.02344 1.21286 1.02664 0.97408 0.93434 1.22025 0.99106 0.97917 0.96003 1.21028 0.96205 0.99192 0.94759 0.91951 1.21936 1.01343 1.01377 0.95732 1.21548 0.95930 1.00652 0.96808 1.20927 0.99653 0.95052 0.89505 0.93056 0.92031 0.92292 0.90061 0.92008 0.95178 0.93898 0.92821 0.88857 0.92868 0.95291 0.88911 0.90471 0.92013 0.92436 0.92795 0.92982 0.93075 0.92768 0.90544 0.91645 0.91535 0.96786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.71 5.93 -4.05 -0.02 1.68 16 3 N -0.60 -12.63 2.46 -175.06 -0.43 -13.06 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.52 -14.84 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.47 7.09 -10.98 -0.08 10.39 16 14 O -0.52 -12.94 13.87 5.56 0.08 -12.86 16 15 C 0.04 0.65 4.01 -4.97 -0.02 0.63 16 16 N -0.54 -8.15 3.76 -241.44 -0.91 -9.06 16 17 C 0.07 1.09 4.62 -4.52 -0.02 1.07 16 18 C -0.11 -1.60 5.41 -27.40 -0.15 -1.75 16 19 C -0.11 -1.30 5.28 -25.69 -0.14 -1.44 16 20 C -0.09 -0.98 2.21 -91.13 -0.20 -1.18 16 21 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 22 C -0.15 -1.26 8.80 37.16 0.33 -0.94 16 23 C -0.11 -1.19 5.16 -27.10 -0.14 -1.33 16 24 C 0.08 0.94 4.93 -6.74 -0.03 0.90 16 25 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.25 6.88 -51.93 -0.36 0.89 16 34 H 0.05 0.76 7.40 -51.93 -0.38 0.38 16 35 H 0.03 0.42 6.66 -51.93 -0.35 0.08 16 36 H 0.09 1.81 5.61 -51.93 -0.29 1.52 16 37 H 0.08 1.24 7.26 -51.93 -0.38 0.86 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.62 7.99 -51.93 -0.41 0.21 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.92 7.11 -51.93 -0.37 0.55 16 45 H 0.06 0.59 7.69 -51.93 -0.40 0.19 16 46 H 0.07 0.73 7.80 -51.93 -0.40 0.32 16 47 H 0.01 0.17 7.54 -51.93 -0.39 -0.23 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -31.73 356.70 -9.22 -40.95 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.51 Total: -1.39 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.54 Total: -0.91 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.60 Total: -48.06 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.73 -9.22 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119680499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.600 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds