Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48560 * 111.00393 * 2 1 4 4 C 1.54375 * 104.59401 * 200.96202 * 3 2 1 5 5 C 1.54262 * 105.06418 * 23.85145 * 4 3 2 6 6 C 1.48563 * 110.99824 * 244.58001 * 2 1 3 7 7 H 1.08998 * 110.51183 * 40.21080 * 6 2 1 8 8 C 1.53002 * 110.41181 * 277.82034 * 6 2 1 9 9 C 1.52998 * 109.47400 * 68.46837 * 8 6 2 10 10 N 1.46895 * 109.47236 * 172.34497 * 9 8 6 11 11 C 1.46905 * 110.99744 * 202.61249 * 10 9 8 12 12 C 1.50698 * 109.47044 * 173.45239 * 11 10 9 13 13 H 1.08002 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00139 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46836 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47398 * 119.99920 * 16 14 12 19 19 H 1.48500 * 109.47062 * 240.00194 * 16 14 12 20 20 C 1.46899 * 111.00113 * 78.65821 * 10 9 8 21 21 C 1.53005 * 109.47060 * 84.81164 * 20 10 9 22 22 C 1.52999 * 109.47271 * 73.31259 * 21 20 10 23 23 C 1.52994 * 109.47164 * 313.31132 * 21 20 10 24 24 C 1.53000 * 109.46839 * 193.31144 * 21 20 10 25 25 H 1.08994 * 109.47218 * 186.46479 * 1 2 3 26 26 H 1.08999 * 109.46855 * 306.46676 * 1 2 3 27 27 H 1.08998 * 109.47241 * 66.46550 * 1 2 3 28 28 H 1.08995 * 110.41234 * 82.17921 * 3 2 1 29 29 H 1.09003 * 110.50522 * 319.78874 * 3 2 1 30 30 H 1.09001 * 110.32345 * 264.95066 * 4 3 2 31 31 H 1.09006 * 110.32635 * 142.74661 * 4 3 2 32 32 H 1.08997 * 110.32140 * 241.09974 * 5 4 3 33 33 H 1.08997 * 110.41065 * 118.93887 * 5 4 3 34 34 H 1.09004 * 109.47210 * 308.46652 * 8 6 2 35 35 H 1.09002 * 109.47406 * 188.47080 * 8 6 2 36 36 H 1.08998 * 109.46722 * 52.33668 * 9 8 6 37 37 H 1.09004 * 109.46960 * 292.34242 * 9 8 6 38 38 H 1.08998 * 109.46911 * 293.45267 * 11 10 9 39 39 H 1.08997 * 109.47048 * 53.44971 * 11 10 9 40 40 H 0.97001 * 119.99868 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.47129 * 324.81178 * 20 10 9 42 42 H 1.08997 * 109.47003 * 204.80785 * 20 10 9 43 43 H 1.09002 * 109.47374 * 273.48406 * 22 21 20 44 44 H 1.09002 * 109.47133 * 33.48343 * 22 21 20 45 45 H 1.09001 * 109.47101 * 153.48171 * 22 21 20 46 46 H 1.09002 * 109.47513 * 193.86778 * 23 21 20 47 47 H 1.09000 * 109.47468 * 313.87001 * 23 21 20 48 48 H 1.09001 * 109.47306 * 73.86702 * 23 21 20 49 49 H 1.08996 * 109.47368 * 299.99587 * 24 21 20 50 50 H 1.08998 * 109.46967 * 60.00603 * 24 21 20 51 51 H 1.09009 * 109.46773 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2500 -0.5345 5 6 3.4432 -0.0541 -1.3586 6 6 2.0013 -0.5954 -1.2527 7 1 1.4103 -0.2731 -2.1100 8 6 2.0104 -2.1223 -1.1560 9 6 0.5711 -2.6411 -1.1436 10 7 0.5783 -4.1072 -1.2356 11 6 -0.7010 -4.6082 -1.7558 12 6 -0.6016 -6.0939 -1.9876 13 1 0.3198 -6.6139 -1.7708 14 6 -1.6867 -6.7892 -2.4776 15 7 -2.8086 -6.1560 -2.7422 16 14 -1.5638 -8.6311 -2.7644 17 1 -0.2055 -9.1007 -2.3905 18 1 -2.5761 -9.3302 -1.9328 19 1 -1.8118 -8.9263 -4.1985 20 6 0.8923 -4.7148 0.0644 21 6 -0.3878 -4.8342 0.8940 22 6 -1.2583 -5.9587 0.3295 23 6 -1.1587 -3.5140 0.8352 24 6 -0.0263 -5.1495 2.3469 25 1 -0.3633 -1.0211 0.1157 26 1 -0.3633 0.6108 0.8265 27 1 -0.3633 0.4103 -0.9422 28 1 2.0079 1.7916 1.0120 29 1 1.4104 2.0228 -0.6591 30 1 4.1483 1.1747 0.2934 31 1 3.6937 2.0994 -1.1700 32 1 4.1483 -0.7694 -0.9352 33 1 3.6942 0.1536 -2.3987 34 1 2.5138 -2.4253 -0.2378 35 1 2.5390 -2.5376 -2.0140 36 1 0.0281 -2.2263 -1.9928 37 1 0.0835 -2.3377 -0.2172 38 1 -1.4914 -4.4053 -1.0332 39 1 -0.9316 -4.1083 -2.6964 40 1 -3.5721 -6.6453 -3.0866 41 1 1.6112 -4.0893 0.5936 42 1 1.3182 -5.7060 -0.0912 43 1 -1.8871 -5.5654 -0.4692 44 1 -0.6199 -6.7487 -0.0662 45 1 -1.8881 -6.3633 1.1219 46 1 -1.9280 -3.5077 1.6074 47 1 -0.4714 -2.6842 1.0002 48 1 -1.6260 -3.4094 -0.1440 49 1 0.5228 -6.0901 2.3888 50 1 0.5938 -4.3483 2.7490 51 1 -0.9383 -5.2351 2.9378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120552947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = 58.825466 kcal Electronic energy + Delta-G solvation = -24860.298859 eV Core-core repulsion = 21796.848702 eV Total energy + Delta-G solvation = -3063.450157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69999 -38.72042 -33.94953 -33.06223 -32.20797 -31.19817 -28.32242 -27.50589 -26.42679 -25.70559 -25.36125 -24.17175 -22.03451 -20.96353 -20.03750 -19.87964 -18.14433 -16.36866 -16.17763 -15.51459 -15.19544 -14.76735 -14.55882 -14.11812 -13.96130 -13.70020 -13.34599 -12.95924 -12.74569 -12.42975 -12.40569 -12.09694 -11.75093 -11.51087 -11.37590 -11.33775 -11.24959 -11.07554 -10.97232 -10.80946 -10.71902 -10.68081 -10.55007 -10.46431 -10.33101 -10.05313 -9.98821 -9.68798 -9.35458 -9.00107 -8.80115 -8.43588 -8.23515 -6.75241 -5.97693 -3.85145 3.33137 3.41800 3.45421 4.05374 4.46930 4.59430 4.71786 4.94260 5.05385 5.24358 5.36128 5.37388 5.46986 5.48885 5.55362 5.59875 5.60990 5.66458 5.74690 5.77155 5.82559 5.91516 5.95244 6.05130 6.10140 6.15236 6.19283 6.28997 6.30242 6.34756 6.43285 6.48322 6.58994 6.67111 6.70512 6.81597 6.93056 6.98127 6.99752 7.11805 7.19186 7.35877 7.44416 7.57985 7.87472 8.12505 8.23546 8.35641 8.67179 9.07699 9.64799 11.12775 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.004640 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.290205 B = 6032.634705 C = 6450.871373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.507 5.507 3 C 0.030 3.970 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.063 3.937 7 H 0.050 0.950 8 C -0.096 4.096 9 C 0.019 3.981 10 N -0.535 5.535 11 C 0.154 3.846 12 C -0.479 4.479 13 H 0.061 0.939 14 C 0.049 3.951 15 N -0.900 5.900 16 Si 0.885 3.115 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.082 3.918 21 C -0.094 4.094 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.133 4.133 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.019 0.981 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.003 0.997 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.049 0.951 50 H 0.042 0.958 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 12.509 6.408 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.231 5.231 3 C -0.098 4.098 4 C -0.162 4.162 5 C -0.159 4.159 6 C -0.046 4.046 7 H 0.068 0.932 8 C -0.135 4.135 9 C -0.109 4.109 10 N -0.257 5.257 11 C 0.030 3.970 12 C -0.518 4.518 13 H 0.079 0.921 14 C -0.150 4.150 15 N -0.541 5.541 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.047 4.047 21 C -0.095 4.095 22 C -0.207 4.207 23 C -0.222 4.222 24 C -0.191 4.191 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.329 12.025 6.459 15.990 hybrid contribution -1.022 -0.338 -0.379 1.141 sum 7.308 11.687 6.080 15.065 Atomic orbital electron populations 1.22976 0.88137 1.04094 1.00095 1.65359 1.08166 1.14121 1.35449 1.23099 0.95211 0.90820 1.00714 1.22274 0.96634 0.97662 0.99615 1.22338 0.96841 0.96854 0.99824 1.22779 0.94732 0.96332 0.90722 0.93201 1.21529 0.98403 0.91261 1.02258 1.22977 0.95844 0.90656 1.01377 1.62261 1.36600 1.03163 1.23718 1.20880 0.85496 0.95351 0.95249 1.21025 0.97795 0.92596 1.40353 0.92055 1.24818 0.95499 0.97918 0.96809 1.69924 1.02655 1.35515 1.46017 0.86616 0.78013 0.86248 0.77747 1.19785 1.21211 1.21243 1.22078 0.94534 0.99368 0.88696 1.21109 0.97597 0.96311 0.94494 1.23132 1.00070 0.98088 0.99433 1.22756 0.99533 0.97152 1.02713 1.21855 1.00312 1.00438 0.96538 0.89018 0.91980 0.95443 0.90518 0.94235 0.91212 0.91747 0.90835 0.91566 0.91723 0.91239 0.92865 0.91273 0.94093 0.96271 0.93129 0.93503 0.91587 0.86486 0.90768 0.97815 0.94119 0.92499 0.90214 0.93227 0.93858 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 8.94 60.06 0.54 0.48 16 2 N -0.51 -6.48 5.34 -230.36 -1.23 -7.71 16 3 C 0.03 0.31 6.48 -2.18 -0.01 0.30 16 4 C -0.12 -1.19 7.00 -25.35 -0.18 -1.36 16 5 C -0.12 -1.32 6.55 -25.35 -0.17 -1.48 16 6 C 0.06 0.82 2.48 -66.07 -0.16 0.66 16 7 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 8 C -0.10 -1.46 4.87 -26.73 -0.13 -1.59 16 9 C 0.02 0.33 3.26 -3.83 -0.01 0.32 16 10 N -0.53 -11.07 4.64 -236.08 -1.10 -12.16 16 11 C 0.15 3.75 3.74 -4.97 -0.02 3.73 16 12 C -0.48 -12.54 4.93 -34.44 -0.17 -12.71 16 13 H 0.06 1.65 6.71 -52.49 -0.35 1.29 16 14 C 0.05 1.33 4.46 -17.82 -0.08 1.25 16 15 N -0.90 -25.42 12.95 55.43 0.72 -24.70 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.08 1.58 4.50 -3.82 -0.02 1.56 16 21 C -0.09 -1.75 0.77 -154.51 -0.12 -1.87 16 22 C -0.15 -3.32 6.59 37.16 0.24 -3.08 16 23 C -0.17 -2.94 6.79 37.15 0.25 -2.69 16 24 C -0.13 -2.15 8.25 37.16 0.31 -1.85 16 25 H 0.09 1.28 3.73 -51.93 -0.19 1.09 16 26 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.81 7.86 -51.93 -0.41 0.41 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.99 7.73 -51.93 -0.40 0.59 16 37 H 0.07 1.16 1.27 -51.93 -0.07 1.09 16 38 H 0.04 1.02 2.06 -51.93 -0.11 0.92 16 39 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.05 0.83 6.68 -51.93 -0.35 0.48 16 42 H 0.07 1.36 7.05 -51.93 -0.37 1.00 16 43 H 0.12 2.92 3.26 -51.93 -0.17 2.75 16 44 H 0.07 1.74 5.43 -51.93 -0.28 1.46 16 45 H 0.00 0.06 7.87 -51.93 -0.41 -0.35 16 46 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 47 H 0.06 0.93 4.84 -51.93 -0.25 0.68 16 48 H 0.08 1.59 4.55 -51.93 -0.24 1.36 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.04 0.70 8.11 -51.92 -0.42 0.28 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -27.08 350.74 -10.02 -37.10 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.95 Total: 4.30 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 0.27 Total: -18.35 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -1.61 Total: -44.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.08 -10.02 -37.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120552947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.930 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds