Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47266 * 2 1 4 4 C 1.36944 * 119.99755 * 274.31207 * 3 2 1 5 5 H 1.07998 * 120.00082 * 337.84458 * 4 3 2 6 6 C 1.38817 * 119.99673 * 157.85007 * 4 3 2 7 7 N 1.31617 * 120.00099 * 7.72946 * 6 4 3 8 8 Si 1.86805 * 119.99547 * 187.73427 * 6 4 3 9 9 H 1.48493 * 109.46983 * 89.99817 * 8 6 4 10 10 H 1.48500 * 109.46539 * 209.99791 * 8 6 4 11 11 H 1.48494 * 109.46858 * 329.99734 * 8 6 4 12 12 C 1.46501 * 120.00000 * 94.30904 * 3 2 1 13 13 C 1.50701 * 109.47026 * 269.99988 * 12 3 2 14 14 O 1.21276 * 120.00117 * 359.97438 * 13 12 3 15 15 N 1.34775 * 119.99620 * 180.02562 * 13 12 3 16 16 C 1.46499 * 120.00311 * 359.97438 * 15 13 12 17 17 C 1.53003 * 109.47285 * 270.00574 * 16 15 13 18 18 C 1.46506 * 119.99793 * 180.02562 * 15 13 12 19 19 C 1.53003 * 109.46875 * 299.99218 * 18 15 13 20 20 C 1.52998 * 109.47178 * 180.02562 * 19 18 15 21 21 C 1.53001 * 109.46923 * 300.00214 * 20 19 18 22 22 C 1.53006 * 109.47124 * 60.00172 * 21 20 19 23 23 C 1.52988 * 109.47482 * 59.99552 * 18 15 13 24 24 H 1.08995 * 109.47619 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47586 * 300.00530 * 1 2 3 26 26 H 1.09012 * 109.47083 * 60.00251 * 1 2 3 27 27 H 1.08997 * 109.46856 * 239.99618 * 2 1 3 28 28 H 1.09004 * 109.46520 * 119.99908 * 2 1 3 29 29 H 0.96994 * 119.99550 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46686 * 150.00271 * 12 3 2 31 31 H 1.08997 * 109.47140 * 29.99850 * 12 3 2 32 32 H 1.08999 * 109.47203 * 30.00256 * 16 15 13 33 33 H 1.09001 * 109.47473 * 150.00372 * 16 15 13 34 34 H 1.09001 * 109.46795 * 299.99421 * 17 16 15 35 35 H 1.08993 * 109.47270 * 59.99731 * 17 16 15 36 36 H 1.09000 * 109.47298 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47012 * 179.97438 * 18 15 13 38 38 H 1.09005 * 109.47322 * 300.00852 * 19 18 15 39 39 H 1.09001 * 109.46633 * 59.99954 * 19 18 15 40 40 H 1.08997 * 109.46977 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47067 * 60.00260 * 20 19 18 42 42 H 1.08999 * 109.47286 * 299.99911 * 21 20 19 43 43 H 1.09002 * 109.47252 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.46784 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.47252 * 59.99718 * 22 21 20 46 46 H 1.09009 * 109.47215 * 300.00015 * 23 18 15 47 47 H 1.09001 * 109.47101 * 59.99763 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1625 2.0564 -1.1826 5 1 2.2702 1.5090 -2.1074 6 6 2.1704 3.4445 -1.1928 7 7 2.1927 4.1108 -0.0579 8 14 2.1491 4.3667 -2.8172 9 1 0.7437 4.6191 -3.2247 10 1 2.8593 5.6614 -2.6605 11 1 2.8275 3.5526 -3.8574 12 6 2.3524 2.0400 1.2651 13 6 1.1312 2.7382 1.8057 14 8 0.0850 2.6906 1.1941 15 7 1.2020 3.4164 2.9682 16 6 2.4659 3.4743 3.7067 17 6 2.5404 2.2990 4.6834 18 6 0.0146 4.0947 3.4940 19 6 -0.4642 5.1403 2.4848 20 6 -1.7038 5.8491 3.0342 21 6 -2.8142 4.8237 3.2719 22 6 -2.3353 3.7782 4.2812 23 6 -1.0955 3.0691 3.7314 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 2.1986 5.0807 -0.0651 30 1 3.1437 2.7704 1.0965 31 1 2.6929 1.2948 1.9840 32 1 3.2990 3.4178 3.0061 33 1 2.5203 4.4113 4.2610 34 1 1.7074 2.3555 5.3841 35 1 2.4861 1.3620 4.1291 36 1 3.4806 2.3423 5.2331 37 1 0.2632 4.5849 4.4353 38 1 0.3268 5.8710 2.3157 39 1 -0.7128 4.6496 1.5438 40 1 -2.0451 6.5936 2.3150 41 1 -1.4547 6.3397 3.9751 42 1 -3.0633 4.3331 2.3310 43 1 -3.6975 5.3288 3.6629 44 1 -3.1262 3.0475 4.4502 45 1 -2.0862 4.2688 5.2221 46 1 -1.3442 2.5785 2.7903 47 1 -0.7543 2.3242 4.4504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121014486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = -23.584806 kcal Electronic energy + Delta-G solvation = -25112.408015 eV Core-core repulsion = 21909.551186 eV Total energy + Delta-G solvation = -3202.856829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.36375 -37.07139 -35.31984 -34.41194 -31.72595 -30.71226 -30.29111 -29.15923 -28.14304 -26.28332 -23.55523 -22.64484 -22.06202 -22.02351 -20.26090 -19.53327 -17.93896 -16.62569 -15.68936 -15.62834 -14.95253 -14.33003 -13.95290 -13.76482 -13.68604 -13.44820 -13.38844 -13.18520 -12.76751 -12.41585 -12.08563 -12.00543 -11.82464 -11.73677 -11.53968 -11.28967 -11.04037 -10.90233 -10.86843 -10.75158 -10.63245 -10.56116 -10.29296 -10.25214 -9.96474 -9.85475 -9.73183 -9.69838 -9.54516 -8.62379 -7.94749 -7.49980 -6.68484 -5.71892 -3.10595 3.43415 3.49528 3.51505 4.03074 4.37711 4.61867 5.09996 5.18145 5.28490 5.42761 5.47497 5.57626 5.62922 5.64071 5.76019 5.77882 5.86168 5.94074 5.97260 6.01890 6.06357 6.14555 6.20287 6.28536 6.31811 6.38614 6.45629 6.50674 6.52191 6.57040 6.61103 6.67471 6.73322 6.79124 6.88845 6.93242 7.10644 7.18067 7.42032 7.50894 7.77662 7.81791 8.43582 8.75122 9.28506 9.84602 10.01086 10.38117 11.34389 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.007349 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.541074 B = 3809.348242 C = 4297.549045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 N -0.580 5.580 4 C -0.238 4.238 5 H 0.071 0.929 6 C 0.009 3.991 7 N -0.905 5.905 8 Si 0.906 3.094 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.166 3.834 13 C 0.540 3.460 14 O -0.530 6.530 15 N -0.627 5.627 16 C 0.117 3.883 17 C -0.169 4.169 18 C 0.165 3.835 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.133 4.133 24 H 0.022 0.978 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.021 0.979 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -0.380 11.028 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 N -0.300 5.300 4 C -0.367 4.367 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.553 5.553 8 Si 0.737 3.263 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.209 1.209 12 C 0.036 3.964 13 C 0.329 3.671 14 O -0.405 6.405 15 N -0.363 5.363 16 C -0.008 4.008 17 C -0.227 4.227 18 C 0.061 3.939 19 C -0.168 4.168 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.171 4.171 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.783 -0.279 10.627 10.989 hybrid contribution -0.205 0.883 -0.717 1.156 sum -2.988 0.605 9.910 10.368 Atomic orbital electron populations 1.22327 0.99157 0.97645 1.02931 1.20823 0.92518 0.86690 0.98000 1.43793 1.74057 1.09777 1.02398 1.19204 1.42497 0.88873 0.86163 0.91099 1.24876 1.00699 0.96487 0.96719 1.69666 1.55692 1.06390 1.23516 0.86232 0.77508 0.79076 0.83518 1.21721 1.22041 1.20859 1.20808 0.95166 0.94712 0.85676 1.21863 0.91313 0.77111 0.76776 1.90410 1.32009 1.61647 1.56407 1.48261 1.08914 1.55149 1.23979 1.21282 0.87926 0.96999 0.94565 1.22262 1.00872 0.99982 0.99625 1.20675 0.85794 0.92222 0.95246 1.21887 0.96072 0.97521 1.01279 1.21498 0.96064 0.97531 1.00084 1.21515 0.97401 0.96898 0.99701 1.21467 0.97638 0.97795 0.98038 1.21966 0.94724 0.98098 1.02346 0.95895 0.92382 0.93114 0.94223 0.94864 0.93719 0.86637 0.96144 0.90148 0.92288 0.93219 0.92491 0.92550 0.92147 0.92693 0.88835 0.92646 0.93027 0.91800 0.92984 0.92642 0.92844 0.89413 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.65 37.16 0.36 -3.09 16 2 C 0.15 3.16 6.44 -4.04 -0.03 3.14 16 3 N -0.58 -14.47 2.07 -174.61 -0.36 -14.83 16 4 C -0.24 -6.50 9.70 -15.05 -0.15 -6.64 16 5 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 6 C 0.01 0.24 5.41 -17.43 -0.09 0.14 16 7 N -0.91 -24.59 8.21 55.49 0.46 -24.13 16 8 Si 0.91 22.30 29.56 -169.99 -5.03 17.27 16 9 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.17 3.84 4.02 -5.19 -0.02 3.82 16 13 C 0.54 12.24 5.06 -10.99 -0.06 12.19 16 14 O -0.53 -13.65 10.10 5.56 0.06 -13.60 16 15 N -0.63 -11.82 2.42 -166.11 -0.40 -12.22 16 16 C 0.12 1.82 5.90 -4.04 -0.02 1.80 16 17 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 18 C 0.17 2.85 2.54 -67.93 -0.17 2.68 16 19 C -0.13 -2.41 5.13 -26.73 -0.14 -2.54 16 20 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 21 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 22 C -0.11 -1.54 5.93 -26.70 -0.16 -1.70 16 23 C -0.13 -2.21 5.13 -26.71 -0.14 -2.35 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 1.34 6.39 -51.93 -0.33 1.01 16 26 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.12 2.89 5.50 -51.93 -0.29 2.61 16 31 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 32 H 0.08 1.34 6.44 -51.93 -0.33 1.01 16 33 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.81 7.22 -51.93 -0.38 0.44 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 2.17 6.17 -51.93 -0.32 1.85 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.78 6.17 -51.92 -0.32 1.46 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -29.17 350.95 -9.13 -38.29 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.59 Total: 2.03 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.55 Total: 1.89 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.31 Total: -51.18 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.06 Total: -13.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.17 -9.13 -38.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121014486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.709 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds