Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46817 * 2 1 4 4 C 1.36945 * 119.99751 * 274.86097 * 3 2 1 5 5 H 1.07998 * 119.99699 * 313.56484 * 4 3 2 6 6 C 1.38813 * 119.99957 * 133.55890 * 4 3 2 7 7 N 1.31614 * 119.99630 * 2.51597 * 6 4 3 8 8 Si 1.86791 * 119.99865 * 182.51713 * 6 4 3 9 9 H 1.48505 * 109.47263 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47106 * 120.00050 * 8 6 4 11 11 H 1.48503 * 109.47431 * 239.99816 * 8 6 4 12 12 C 1.46494 * 120.00386 * 94.86445 * 3 2 1 13 13 C 1.50702 * 109.47018 * 89.99686 * 12 3 2 14 14 O 1.21279 * 120.00045 * 0.02562 * 13 12 3 15 15 N 1.34781 * 119.99657 * 179.97438 * 13 12 3 16 16 C 1.46500 * 120.00103 * 359.42893 * 15 13 12 17 17 C 1.46504 * 119.99672 * 179.42566 * 15 13 12 18 18 H 1.09000 * 109.47008 * 310.22676 * 17 15 13 19 19 C 1.52999 * 109.47060 * 190.23150 * 17 15 13 20 20 C 1.53002 * 109.46709 * 299.99824 * 19 17 15 21 21 C 1.52992 * 109.47415 * 300.00042 * 20 19 17 22 22 C 1.52999 * 109.47216 * 60.00268 * 21 20 19 23 23 C 1.52997 * 109.46965 * 299.99974 * 22 21 20 24 24 H 1.09004 * 109.47324 * 299.99918 * 23 22 21 25 25 C 1.53002 * 109.47473 * 179.97438 * 23 22 21 26 26 H 1.08996 * 109.47196 * 300.00204 * 1 2 3 27 27 H 1.09000 * 109.47453 * 60.00826 * 1 2 3 28 28 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47196 * 239.99795 * 2 1 3 30 30 H 1.08995 * 109.47011 * 119.99280 * 2 1 3 31 31 H 0.97006 * 119.99721 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47250 * 330.00072 * 12 3 2 33 33 H 1.08995 * 109.47264 * 209.99793 * 12 3 2 34 34 H 1.08994 * 109.46597 * 267.82643 * 16 15 13 35 35 H 1.08997 * 109.46865 * 27.83234 * 16 15 13 36 36 H 1.09007 * 109.46826 * 147.82941 * 16 15 13 37 37 H 1.08994 * 109.47105 * 59.99530 * 19 17 15 38 38 H 1.09001 * 109.47263 * 180.02562 * 19 17 15 39 39 H 1.09003 * 109.47010 * 60.00718 * 20 19 17 40 40 H 1.09009 * 109.46698 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47509 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47540 * 299.99781 * 21 20 19 43 43 H 1.09002 * 109.47498 * 59.99838 * 22 21 20 44 44 H 1.09003 * 109.47194 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47146 * 306.85970 * 25 23 22 46 46 H 1.09004 * 109.46956 * 66.85465 * 25 23 22 47 47 H 1.08996 * 109.47298 * 186.85835 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1517 2.0603 -1.1817 5 1 2.6292 1.5857 -2.0262 6 6 1.6731 3.3584 -1.2942 7 7 1.1358 3.9543 -0.2509 8 14 1.7917 4.2595 -2.9261 9 1 2.4313 3.3761 -3.9340 10 1 0.4296 4.6304 -3.3869 11 1 2.6080 5.4882 -2.7550 12 6 2.3638 2.0361 1.2641 13 6 3.8171 1.7887 1.5770 14 8 4.4973 1.1306 0.8186 15 7 4.3611 2.2997 2.6993 16 6 3.5430 3.1060 3.6086 17 6 5.7707 2.0487 3.0100 18 1 5.9774 0.9820 2.9232 19 6 6.0685 2.5114 4.4376 20 6 5.7782 4.0087 4.5593 21 6 6.6621 4.7810 3.5779 22 6 6.3642 4.3183 2.1503 23 6 6.6545 2.8211 2.0286 24 1 7.7033 2.6343 2.2597 25 6 6.3561 2.3580 0.6011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.8017 4.8616 -0.3293 32 1 1.7456 1.6299 2.0646 33 1 2.1882 3.1083 1.1777 34 1 3.6353 4.1590 3.3430 35 1 2.4999 2.8005 3.5263 36 1 3.8852 2.9582 4.6329 37 1 5.4388 1.9612 5.1366 38 1 7.1174 2.3251 4.6685 39 1 4.7295 4.1954 4.3282 40 1 5.9900 4.3383 5.5765 41 1 6.4556 5.8478 3.6650 42 1 7.7108 4.5944 3.8090 43 1 5.3155 4.5050 1.9192 44 1 6.9943 4.8682 1.4512 45 1 5.3434 2.6541 0.3274 46 1 7.0670 2.8172 -0.0859 47 1 6.4452 1.2732 0.5449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121040180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = 15.922030 kcal Electronic energy + Delta-G solvation = -24962.192128 eV Core-core repulsion = 21761.048444 eV Total energy + Delta-G solvation = -3201.143684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39137 -37.51859 -35.31226 -34.07972 -32.32694 -31.73687 -30.34595 -29.03081 -27.08141 -26.48176 -25.09179 -23.59192 -22.02359 -21.14667 -20.65380 -19.53404 -18.08127 -16.72230 -16.18866 -15.95809 -15.08874 -14.64950 -14.37285 -14.25309 -13.78518 -13.70590 -13.38744 -13.13600 -12.81487 -12.62337 -12.32643 -12.00391 -11.89853 -11.70133 -11.66732 -11.58189 -11.15278 -11.06798 -10.95305 -10.87795 -10.72559 -10.45916 -10.19914 -10.15440 -10.02590 -9.95037 -9.68035 -9.67276 -9.62938 -8.51128 -8.45448 -7.70829 -6.41915 -5.74281 -3.48621 3.35717 3.43910 3.48076 3.71385 3.82443 4.48952 4.86382 4.90259 4.96722 5.33082 5.37758 5.39893 5.48501 5.54987 5.63605 5.65651 5.69401 5.75344 5.83228 5.88913 6.03220 6.06747 6.14467 6.15568 6.20127 6.24799 6.37241 6.42284 6.46831 6.52041 6.55586 6.61151 6.65266 6.72122 6.74644 6.85004 7.06893 7.26658 7.31390 7.37525 7.52333 7.89890 8.23445 8.65019 9.15170 9.39992 9.79494 10.42028 11.21141 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.006468 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.849030 B = 4327.727683 C = 4917.121260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 N -0.564 5.564 4 C -0.238 4.238 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.123 3.877 13 C 0.476 3.524 14 O -0.521 6.521 15 N -0.620 5.620 16 C 0.077 3.923 17 C 0.154 3.846 18 H 0.068 0.932 19 C -0.122 4.122 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.096 4.096 24 H 0.060 0.940 25 C -0.138 4.138 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.255 0.745 32 H 0.047 0.953 33 H 0.138 0.862 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.019 0.981 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 0.113 11.063 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 N -0.283 5.283 4 C -0.369 4.369 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.544 5.544 8 Si 0.729 3.271 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C -0.007 4.007 13 C 0.265 3.735 14 O -0.396 6.396 15 N -0.359 5.359 16 C -0.066 4.066 17 C 0.051 3.949 18 H 0.086 0.914 19 C -0.159 4.159 20 C -0.200 4.200 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.116 4.116 24 H 0.079 0.921 25 C -0.194 4.194 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.038 0.962 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.901 -0.119 10.609 12.656 hybrid contribution 0.268 0.696 -0.679 1.009 sum 7.168 0.578 9.930 12.260 Atomic orbital electron populations 1.22243 0.99566 0.98302 1.01830 1.20799 0.91631 0.86927 0.98253 1.43333 1.72676 1.10043 1.02270 1.19082 1.30849 0.96749 0.90200 0.92420 1.25481 0.96989 0.98796 0.97044 1.69538 1.43304 1.13399 1.28195 0.86251 0.77284 0.79429 0.84101 1.20037 1.21405 1.21621 1.21337 0.86544 1.04678 0.88184 1.23327 0.93067 0.78655 0.78494 1.90623 1.62449 1.39031 1.47540 1.48239 1.09370 1.54046 1.24207 1.22098 0.95671 0.95070 0.93803 1.20895 0.82342 0.98578 0.93133 0.91417 1.21741 1.01466 0.96619 0.96123 1.22578 1.04006 0.94649 0.98747 1.21480 0.99135 0.99039 0.95505 1.21553 1.02269 0.95537 0.95667 1.21527 0.98118 0.95026 0.96917 0.92118 1.22366 1.02296 1.01485 0.93284 0.93878 0.92662 0.95075 0.94203 0.95053 0.93430 0.93539 0.84557 0.92558 0.91251 0.91055 0.91717 0.91366 0.87713 0.92697 0.92530 0.92892 0.91307 0.92792 0.89918 0.96166 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.21 37.16 0.38 -2.85 16 2 C 0.15 3.33 6.39 -4.04 -0.03 3.31 16 3 N -0.56 -14.19 1.91 -174.62 -0.33 -14.53 16 4 C -0.24 -6.57 9.45 -15.06 -0.14 -6.72 16 5 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 6 C 0.02 0.42 5.37 -17.43 -0.09 0.33 16 7 N -0.90 -24.55 10.85 55.49 0.60 -23.94 16 8 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.12 2.81 4.25 -5.20 -0.02 2.79 16 13 C 0.48 10.15 6.32 -10.98 -0.07 10.08 16 14 O -0.52 -12.51 11.43 5.56 0.06 -12.44 16 15 N -0.62 -10.50 2.24 -177.84 -0.40 -10.90 16 16 C 0.08 1.06 7.92 59.85 0.47 1.53 16 17 C 0.15 2.35 2.60 -67.93 -0.18 2.18 16 18 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 19 C -0.12 -1.42 4.95 -26.73 -0.13 -1.55 16 20 C -0.16 -1.81 5.13 -26.73 -0.14 -1.94 16 21 C -0.11 -1.37 5.92 -26.74 -0.16 -1.52 16 22 C -0.11 -1.68 5.04 -26.73 -0.13 -1.82 16 23 C -0.10 -1.52 2.54 -90.62 -0.23 -1.75 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.14 -2.67 7.29 37.16 0.27 -2.40 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.05 0.99 7.36 -51.93 -0.38 0.61 16 33 H 0.14 3.43 5.24 -51.93 -0.27 3.16 16 34 H 0.06 0.78 6.24 -51.93 -0.32 0.46 16 35 H 0.07 0.98 6.36 -51.93 -0.33 0.65 16 36 H 0.07 0.79 4.90 -51.93 -0.25 0.54 16 37 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.20 2.98 -56.79 -0.17 1.03 16 40 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.19 6.86 -51.93 -0.36 0.83 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.92 5.20 -51.93 -0.27 1.65 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 1.38 6.79 -51.93 -0.35 1.02 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -29.19 341.69 -8.26 -37.45 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.12 Total: 2.89 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.20 Total: -0.35 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.13 Total: -49.37 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.19 -8.26 -37.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121040180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.374 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds