Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46817 * 2 1 4 4 C 1.36945 * 119.99751 * 274.86097 * 3 2 1 5 5 H 1.07998 * 119.99699 * 313.56484 * 4 3 2 6 6 C 1.38813 * 119.99957 * 133.55890 * 4 3 2 7 7 N 1.31614 * 119.99630 * 2.51597 * 6 4 3 8 8 Si 1.86791 * 119.99865 * 182.51713 * 6 4 3 9 9 H 1.48505 * 109.47263 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47106 * 120.00050 * 8 6 4 11 11 H 1.48503 * 109.47431 * 239.99816 * 8 6 4 12 12 C 1.46494 * 120.00386 * 94.86445 * 3 2 1 13 13 C 1.50702 * 109.47018 * 89.99686 * 12 3 2 14 14 O 1.21279 * 120.00045 * 0.02562 * 13 12 3 15 15 N 1.34781 * 119.99657 * 179.97438 * 13 12 3 16 16 C 1.46500 * 120.00103 * 359.42893 * 15 13 12 17 17 C 1.46504 * 119.99672 * 179.42566 * 15 13 12 18 18 H 1.09000 * 109.47008 * 310.22676 * 17 15 13 19 19 C 1.52999 * 109.47060 * 190.23150 * 17 15 13 20 20 C 1.53002 * 109.46709 * 299.99824 * 19 17 15 21 21 C 1.52992 * 109.47415 * 300.00042 * 20 19 17 22 22 C 1.52999 * 109.47216 * 60.00268 * 21 20 19 23 23 C 1.52997 * 109.46965 * 299.99974 * 22 21 20 24 24 H 1.09004 * 109.47324 * 299.99918 * 23 22 21 25 25 C 1.53002 * 109.47473 * 179.97438 * 23 22 21 26 26 H 1.08996 * 109.47196 * 300.00204 * 1 2 3 27 27 H 1.09000 * 109.47453 * 60.00826 * 1 2 3 28 28 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47196 * 239.99795 * 2 1 3 30 30 H 1.08995 * 109.47011 * 119.99280 * 2 1 3 31 31 H 0.97006 * 119.99721 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47250 * 330.00072 * 12 3 2 33 33 H 1.08995 * 109.47264 * 209.99793 * 12 3 2 34 34 H 1.08994 * 109.46597 * 267.82643 * 16 15 13 35 35 H 1.08997 * 109.46865 * 27.83234 * 16 15 13 36 36 H 1.09007 * 109.46826 * 147.82941 * 16 15 13 37 37 H 1.08994 * 109.47105 * 59.99530 * 19 17 15 38 38 H 1.09001 * 109.47263 * 180.02562 * 19 17 15 39 39 H 1.09003 * 109.47010 * 60.00718 * 20 19 17 40 40 H 1.09009 * 109.46698 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47509 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47540 * 299.99781 * 21 20 19 43 43 H 1.09002 * 109.47498 * 59.99838 * 22 21 20 44 44 H 1.09003 * 109.47194 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47146 * 306.85970 * 25 23 22 46 46 H 1.09004 * 109.46956 * 66.85465 * 25 23 22 47 47 H 1.08996 * 109.47298 * 186.85835 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1517 2.0603 -1.1817 5 1 2.6292 1.5857 -2.0262 6 6 1.6731 3.3584 -1.2942 7 7 1.1358 3.9543 -0.2509 8 14 1.7917 4.2595 -2.9261 9 1 2.4313 3.3761 -3.9340 10 1 0.4296 4.6304 -3.3869 11 1 2.6080 5.4882 -2.7550 12 6 2.3638 2.0361 1.2641 13 6 3.8171 1.7887 1.5770 14 8 4.4973 1.1306 0.8186 15 7 4.3611 2.2997 2.6993 16 6 3.5430 3.1060 3.6086 17 6 5.7707 2.0487 3.0100 18 1 5.9774 0.9820 2.9232 19 6 6.0685 2.5114 4.4376 20 6 5.7782 4.0087 4.5593 21 6 6.6621 4.7810 3.5779 22 6 6.3642 4.3183 2.1503 23 6 6.6545 2.8211 2.0286 24 1 7.7033 2.6343 2.2597 25 6 6.3561 2.3580 0.6011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.8017 4.8616 -0.3293 32 1 1.7456 1.6299 2.0646 33 1 2.1882 3.1083 1.1777 34 1 3.6353 4.1590 3.3430 35 1 2.4999 2.8005 3.5263 36 1 3.8852 2.9582 4.6329 37 1 5.4388 1.9612 5.1366 38 1 7.1174 2.3251 4.6685 39 1 4.7295 4.1954 4.3282 40 1 5.9900 4.3383 5.5765 41 1 6.4556 5.8478 3.6650 42 1 7.7108 4.5944 3.8090 43 1 5.3155 4.5050 1.9192 44 1 6.9943 4.8682 1.4512 45 1 5.3434 2.6541 0.3274 46 1 7.0670 2.8172 -0.0859 47 1 6.4452 1.2732 0.5449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121040180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = 0.915730 kcal Electronic energy + Delta-G solvation = -24962.842850 eV Core-core repulsion = 21761.048444 eV Total energy + Delta-G solvation = -3201.794406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74352 -39.02931 -37.15377 -35.46302 -33.75939 -33.52912 -31.65335 -30.69015 -28.40602 -28.31040 -26.42604 -25.44564 -23.27594 -22.50094 -22.09796 -20.98870 -19.55070 -18.63151 -17.74746 -17.36447 -16.85217 -16.27416 -15.78277 -15.51043 -15.33929 -15.28799 -14.79997 -14.59663 -14.26824 -14.08537 -13.96801 -13.47842 -13.26328 -13.13496 -13.00221 -12.90156 -12.76750 -12.69614 -12.51183 -12.37004 -12.34787 -12.20010 -12.08786 -11.86954 -11.51419 -11.46452 -11.02940 -10.95956 -10.76129 -10.58230 -10.12915 -9.15895 -8.41954 -7.77903 -5.58494 1.40889 1.43728 1.53517 2.12071 2.33880 2.50774 3.26621 3.71678 3.79363 3.82958 3.91468 4.22526 4.26844 4.33640 4.42866 4.43869 4.54850 4.58120 4.60978 4.65047 4.73061 4.80766 4.82320 4.85309 4.89082 4.95711 4.99106 5.03474 5.06594 5.11616 5.18906 5.29046 5.31008 5.35669 5.43271 5.46498 5.50019 5.54602 5.58712 5.70390 5.79045 6.03036 6.53914 6.73823 7.18698 7.66558 7.86593 8.38586 9.11501 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.006468 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.849030 B = 4327.727683 C = 4917.121260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.147 3.853 3 N -0.581 5.581 4 C -0.255 4.255 5 H 0.034 0.966 6 C -0.021 4.021 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.289 1.289 12 C 0.126 3.874 13 C 0.474 3.526 14 O -0.556 6.556 15 N -0.612 5.612 16 C 0.072 3.928 17 C 0.151 3.849 18 H 0.052 0.948 19 C -0.113 4.113 20 C -0.162 4.162 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.093 4.093 24 H 0.083 0.917 25 C -0.126 4.126 26 H 0.039 0.961 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.256 0.744 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.022 0.978 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 0.739 13.566 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.021 3.979 3 N -0.301 5.301 4 C -0.385 4.385 5 H 0.052 0.948 6 C -0.218 4.218 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.215 1.215 12 C -0.003 4.003 13 C 0.263 3.737 14 O -0.435 6.435 15 N -0.348 5.348 16 C -0.069 4.069 17 C 0.047 3.953 18 H 0.070 0.930 19 C -0.151 4.151 20 C -0.198 4.198 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.113 4.113 24 H 0.102 0.898 25 C -0.183 4.183 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.683 0.521 13.163 15.250 hybrid contribution 0.074 0.478 -1.450 1.529 sum 7.757 0.999 11.712 14.084 Atomic orbital electron populations 1.22058 0.97712 1.00190 1.00433 1.20880 0.93046 0.85673 0.98284 1.43505 1.73495 1.10934 1.02197 1.19021 1.31286 0.97485 0.90757 0.94798 1.25977 0.97011 0.99215 0.99580 1.69664 1.43436 1.13444 1.29009 0.85448 0.77337 0.78140 0.81005 1.20381 1.20610 1.21530 1.21183 0.88089 1.03238 0.87809 1.22854 0.92434 0.78903 0.79553 1.90616 1.62897 1.40965 1.49022 1.48097 1.10591 1.52968 1.23102 1.22357 0.95089 0.94526 0.94971 1.21051 0.80746 0.97799 0.95677 0.93015 1.21734 1.03085 0.97128 0.93106 1.22565 1.03362 0.93898 0.99982 1.21453 1.00322 0.99669 0.93138 1.21496 1.00242 0.94750 0.98230 1.21523 0.99547 0.95756 0.94446 0.89844 1.22143 0.99708 1.00108 0.96300 0.94162 0.94986 0.91480 0.95253 0.93889 0.93428 0.92210 0.86691 0.92440 0.91836 0.87285 0.90130 0.89378 0.88376 0.89831 0.91625 0.91298 0.94348 0.93152 0.94103 0.95935 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 10.21 71.98 0.74 -5.05 16 2 C 0.15 6.63 6.39 86.38 0.55 7.18 16 3 N -0.58 -30.22 1.91 -706.37 -1.35 -31.57 16 4 C -0.25 -14.61 9.45 84.03 0.79 -13.82 16 5 H 0.03 2.07 7.83 -2.91 -0.02 2.05 16 6 C -0.02 -1.15 5.37 84.86 0.46 -0.69 16 7 N -0.91 -50.61 10.85 21.65 0.23 -50.38 16 8 Si 0.95 45.57 29.55 68.60 2.03 47.59 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 C 0.13 5.95 4.25 85.63 0.36 6.31 16 13 C 0.47 20.80 6.32 87.66 0.55 21.35 16 14 O -0.56 -27.95 11.43 -3.03 -0.03 -27.99 16 15 N -0.61 -20.44 2.24 -834.94 -1.87 -22.30 16 16 C 0.07 1.88 7.92 127.77 1.01 2.89 16 17 C 0.15 4.37 2.60 44.99 0.12 4.49 16 18 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 19 C -0.11 -2.17 4.95 30.59 0.15 -2.02 16 20 C -0.16 -2.87 5.13 30.59 0.16 -2.72 16 21 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 22 C -0.11 -3.14 5.04 30.59 0.15 -2.99 16 23 C -0.09 -2.87 2.54 -10.79 -0.03 -2.90 16 24 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 25 C -0.13 -5.07 7.29 71.98 0.52 -4.54 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 30 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 31 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 32 H 0.06 2.57 7.36 -2.39 -0.02 2.55 16 33 H 0.12 5.97 5.24 -2.39 -0.01 5.96 16 34 H 0.06 1.53 6.24 -2.39 -0.01 1.51 16 35 H 0.06 1.73 6.36 -2.39 -0.02 1.72 16 36 H 0.11 2.03 4.90 -2.38 -0.01 2.02 16 37 H 0.08 1.35 7.35 -2.39 -0.02 1.33 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.90 2.98 -6.96 -0.02 1.88 16 40 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 1.99 5.20 -2.51 -0.01 1.98 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 2.02 6.79 -2.39 -0.02 2.00 16 Total: -1.00 -66.26 341.69 5.65 -60.61 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.92 Total: 18.57 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.73 Total: 5.47 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -2.99 Total: -104.25 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.03 Total: -27.99 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -66.26 5.65 -60.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121040180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.522 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds