Wall clock time and date at job start Tue Mar 31 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47460 * 2 1 4 4 C 1.36930 * 120.00050 * 274.70213 * 3 2 1 5 5 H 1.08002 * 120.00447 * 337.90107 * 4 3 2 6 6 C 1.38819 * 120.00163 * 157.90458 * 4 3 2 7 7 N 1.31615 * 119.99516 * 8.21512 * 6 4 3 8 8 Si 1.86801 * 120.00164 * 188.22120 * 6 4 3 9 9 H 1.48503 * 109.47206 * 89.99478 * 8 6 4 10 10 H 1.48494 * 109.46981 * 209.99803 * 8 6 4 11 11 H 1.48503 * 109.46803 * 330.00017 * 8 6 4 12 12 C 1.46507 * 119.99959 * 94.69911 * 3 2 1 13 13 C 1.50702 * 109.47106 * 270.00278 * 12 3 2 14 14 O 1.21279 * 119.99697 * 0.02562 * 13 12 3 15 15 N 1.34773 * 119.99535 * 179.97438 * 13 12 3 16 16 C 1.46498 * 120.00635 * 0.02562 * 15 13 12 17 17 C 1.46508 * 119.99437 * 179.97438 * 15 13 12 18 18 H 1.09001 * 109.47431 * 0.02562 * 17 15 13 19 19 C 1.53007 * 109.46590 * 120.00317 * 17 15 13 20 20 C 1.52999 * 109.46704 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.47243 * 299.99647 * 20 19 17 22 22 C 1.53002 * 109.46563 * 60.00255 * 21 20 19 23 23 C 1.52999 * 109.47054 * 240.00025 * 17 15 13 24 24 H 1.09001 * 109.47191 * 300.00311 * 23 17 15 25 25 C 1.52998 * 109.47008 * 60.00658 * 23 17 15 26 26 H 1.08998 * 109.46531 * 300.00034 * 1 2 3 27 27 H 1.09000 * 109.46924 * 59.99899 * 1 2 3 28 28 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47208 * 239.99761 * 2 1 3 30 30 H 1.09000 * 109.46924 * 120.00101 * 2 1 3 31 31 H 0.97008 * 119.99476 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47021 * 149.99785 * 12 3 2 33 33 H 1.09000 * 109.46907 * 30.00387 * 12 3 2 34 34 H 1.09004 * 109.46828 * 270.00400 * 16 15 13 35 35 H 1.09000 * 109.46799 * 29.99571 * 16 15 13 36 36 H 1.08993 * 109.47229 * 149.99810 * 16 15 13 37 37 H 1.09001 * 109.47338 * 59.99883 * 19 17 15 38 38 H 1.08998 * 109.46954 * 299.99856 * 19 17 15 39 39 H 1.09001 * 109.47049 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47394 * 59.99825 * 20 19 17 41 41 H 1.08996 * 109.47159 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47071 * 300.00376 * 21 20 19 43 43 H 1.08992 * 109.47331 * 60.00363 * 22 21 20 44 44 H 1.09006 * 109.46890 * 180.02562 * 22 21 20 45 45 H 1.08992 * 109.47431 * 59.99884 * 25 23 17 46 46 H 1.08998 * 109.46778 * 179.97438 * 25 23 17 47 47 H 1.08996 * 109.47120 * 299.99581 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1551 2.0591 -1.1819 5 1 2.2559 1.5138 -2.1087 6 6 2.1641 3.4472 -1.1888 7 7 2.2044 4.1106 -0.0528 8 14 2.1187 4.3735 -2.8104 9 1 0.7073 4.6281 -3.1957 10 1 2.8324 5.6671 -2.6615 11 1 2.7803 3.5613 -3.8630 12 6 2.3607 2.0371 1.2645 13 6 1.1429 2.7341 1.8145 14 8 0.0926 2.6870 1.2100 15 7 1.2210 3.4087 2.9787 16 6 2.4896 3.4650 3.7091 17 6 0.0373 4.0867 3.5130 18 1 -0.8044 3.9351 2.8373 19 6 -0.3032 3.5098 4.8887 20 6 -1.5398 4.2174 5.4465 21 6 -1.2546 5.7149 5.5779 22 6 -0.9141 6.2917 4.2023 23 6 0.3231 5.5840 3.6445 24 1 1.1647 5.7353 4.3205 25 6 0.6636 6.1609 2.2690 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2104 5.0807 -0.0577 32 1 3.1509 2.7678 1.0925 33 1 2.7058 1.2902 1.9795 34 1 2.5475 2.6256 4.4020 35 1 3.3181 3.4109 3.0029 36 1 2.5471 4.4003 4.2658 37 1 0.5384 3.6611 5.5646 38 1 -0.5068 2.4431 4.7950 39 1 -1.7821 3.8067 6.4267 40 1 -2.3812 4.0657 4.7704 41 1 -2.1354 6.2189 5.9757 42 1 -0.4132 5.8666 6.2540 43 1 -1.7554 6.1400 3.5263 44 1 -0.7105 7.3585 4.2959 45 1 -0.1779 6.0096 1.5930 46 1 0.8667 7.2277 2.3626 47 1 1.5442 5.6565 1.8713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121040353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:45 Heat of formation + Delta-G solvation = -23.638894 kcal Electronic energy + Delta-G solvation = -24916.587330 eV Core-core repulsion = 21713.728155 eV Total energy + Delta-G solvation = -3202.859174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46326 -37.48565 -35.26511 -33.87775 -32.13025 -31.72113 -30.00435 -28.78234 -26.70254 -26.15548 -25.27983 -23.53644 -22.08556 -21.01500 -20.31043 -19.26432 -18.29088 -16.66406 -15.72276 -15.46530 -15.01477 -14.43581 -14.24376 -14.16911 -13.79232 -13.60495 -13.42902 -12.72245 -12.53217 -12.40532 -12.13066 -11.94251 -11.83227 -11.63189 -11.51913 -11.39535 -11.12227 -11.06336 -10.85487 -10.82307 -10.68502 -10.63566 -10.34139 -10.09675 -10.03018 -9.89308 -9.86174 -9.77172 -9.60305 -8.67894 -8.08132 -7.49842 -6.70415 -5.72573 -3.10697 3.43435 3.49503 3.51813 4.05091 4.36109 4.61545 4.88420 5.01443 5.09388 5.35269 5.43658 5.47652 5.61900 5.66309 5.68854 5.75047 5.79260 5.85428 5.91630 6.07965 6.13839 6.16565 6.19518 6.20601 6.27583 6.33357 6.34088 6.41003 6.48064 6.51347 6.56533 6.61287 6.67896 6.73218 6.80596 6.96196 7.10856 7.13957 7.41061 7.49694 7.70214 7.82794 8.43326 8.71259 9.28489 9.82827 9.98223 10.37626 11.33761 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.006587 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.871634 B = 4249.892405 C = 5060.060352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 N -0.580 5.580 4 C -0.238 4.238 5 H 0.072 0.928 6 C 0.009 3.991 7 N -0.905 5.905 8 Si 0.906 3.094 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.167 3.833 13 C 0.536 3.464 14 O -0.538 6.538 15 N -0.625 5.625 16 C 0.092 3.908 17 C 0.152 3.848 18 H 0.091 0.909 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.095 4.095 24 H 0.063 0.937 25 C -0.144 4.144 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.252 0.748 32 H 0.119 0.881 33 H 0.021 0.979 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.035 0.965 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 1.252 12.198 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 N -0.301 5.301 4 C -0.367 4.367 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.553 5.553 8 Si 0.737 3.263 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.037 3.963 13 C 0.325 3.675 14 O -0.412 6.412 15 N -0.361 5.361 16 C -0.052 4.052 17 C 0.047 3.953 18 H 0.109 0.891 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.114 4.114 24 H 0.081 0.919 25 C -0.201 4.201 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.007 1.338 11.784 12.028 hybrid contribution -0.266 0.894 -0.751 1.198 sum -2.273 2.232 11.033 11.484 Atomic orbital electron populations 1.22328 0.99183 0.97683 1.02929 1.20832 0.92504 0.86666 0.98053 1.43808 1.73942 1.09813 1.02486 1.19203 1.42580 0.88866 0.86055 0.91069 1.24871 1.00665 0.96470 0.96759 1.69685 1.55610 1.06495 1.23508 0.86234 0.77534 0.79088 0.83491 1.21741 1.22015 1.20844 1.20796 0.95004 0.94789 0.85690 1.22034 0.91440 0.77141 0.76849 1.90467 1.31964 1.61956 1.56843 1.48028 1.09032 1.55058 1.24031 1.21472 0.87429 0.99729 0.96592 1.20771 0.90545 0.90190 0.93813 0.89086 1.21883 0.97489 0.99726 0.97271 1.21490 0.98228 0.95251 1.00404 1.21536 1.00761 0.95785 0.97417 1.21599 0.98317 0.98998 0.96154 1.21417 0.96997 0.95349 0.97641 0.91900 1.21800 1.03867 0.98719 0.95725 0.92417 0.93120 0.95819 0.94186 0.94779 0.93605 0.86317 0.96107 0.94700 0.90968 0.92824 0.92286 0.92174 0.92410 0.92038 0.92528 0.92295 0.92085 0.92394 0.93313 0.94606 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.66 37.16 0.36 -3.15 16 2 C 0.15 3.18 6.44 -4.04 -0.03 3.16 16 3 N -0.58 -14.58 2.07 -174.60 -0.36 -14.94 16 4 C -0.24 -6.50 9.69 -15.06 -0.15 -6.65 16 5 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 6 C 0.01 0.24 5.41 -17.43 -0.09 0.15 16 7 N -0.91 -24.26 7.73 55.49 0.43 -23.83 16 8 Si 0.91 22.28 29.56 -169.99 -5.03 17.26 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.17 3.88 4.02 -5.19 -0.02 3.86 16 13 C 0.54 12.44 5.65 -10.99 -0.06 12.38 16 14 O -0.54 -14.59 13.25 5.56 0.07 -14.51 16 15 N -0.62 -11.81 2.00 -173.93 -0.35 -12.16 16 16 C 0.09 1.42 9.30 59.85 0.56 1.98 16 17 C 0.15 2.61 1.97 -67.92 -0.13 2.48 16 18 H 0.09 1.90 6.90 -51.93 -0.36 1.54 16 19 C -0.13 -1.76 5.21 -26.73 -0.14 -1.90 16 20 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 21 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 22 C -0.11 -1.49 5.20 -26.70 -0.14 -1.63 16 23 C -0.09 -1.46 2.09 -90.59 -0.19 -1.65 16 24 H 0.06 0.92 6.66 -51.93 -0.35 0.58 16 25 C -0.14 -2.61 9.04 37.16 0.34 -2.28 16 26 H 0.06 1.36 6.38 -51.93 -0.33 1.03 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.03 0.67 7.84 -51.93 -0.41 0.26 16 31 H 0.25 6.76 7.45 -40.82 -0.30 6.46 16 32 H 0.12 2.94 5.48 -51.93 -0.28 2.66 16 33 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 36 H 0.05 0.73 6.42 -51.93 -0.33 0.40 16 37 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.81 6.19 -51.93 -0.32 1.49 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -29.73 350.32 -8.49 -38.22 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.53 Total: 0.99 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.02 Total: 3.70 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.28 Total: -50.93 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.51 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.73 -8.49 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121040353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.580 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds