Wall clock time and date at job start Tue Mar 31 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47119 * 2 1 4 4 C 1.36938 * 119.99841 * 274.32314 * 3 2 1 5 5 H 1.08002 * 120.00241 * 337.81527 * 4 3 2 6 6 C 1.38816 * 120.00100 * 157.80878 * 4 3 2 7 7 N 1.31617 * 119.99567 * 7.73280 * 6 4 3 8 8 Si 1.86793 * 120.00116 * 187.72938 * 6 4 3 9 9 H 1.48497 * 109.47038 * 60.00690 * 8 6 4 10 10 H 1.48507 * 109.47006 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47465 * 300.00308 * 8 6 4 12 12 C 1.46502 * 120.00044 * 94.32710 * 3 2 1 13 13 C 1.50701 * 109.46736 * 270.00034 * 12 3 2 14 14 O 1.21283 * 120.00149 * 0.02562 * 13 12 3 15 15 N 1.34777 * 119.99797 * 180.02562 * 13 12 3 16 16 C 1.46501 * 119.99778 * 359.97438 * 15 13 12 17 17 C 1.46498 * 119.99720 * 180.02562 * 15 13 12 18 18 C 1.53003 * 109.47208 * 269.99178 * 17 15 13 19 19 C 1.53001 * 109.47358 * 295.00777 * 18 17 15 20 20 C 1.52991 * 109.47058 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47721 * 59.99687 * 20 19 18 22 22 C 1.53001 * 109.47110 * 300.00281 * 21 20 19 23 23 C 1.52993 * 109.47195 * 175.00023 * 18 17 15 24 24 H 1.09005 * 109.47424 * 299.99569 * 1 2 3 25 25 H 1.08995 * 109.47410 * 60.00205 * 1 2 3 26 26 H 1.09009 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47524 * 240.00118 * 2 1 3 28 28 H 1.09008 * 109.47323 * 120.00009 * 2 1 3 29 29 H 0.96997 * 119.99919 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46662 * 150.00158 * 12 3 2 31 31 H 1.08994 * 109.47049 * 29.99746 * 12 3 2 32 32 H 1.09006 * 109.47148 * 270.00062 * 16 15 13 33 33 H 1.08993 * 109.47541 * 30.00317 * 16 15 13 34 34 H 1.09000 * 109.46646 * 150.00814 * 16 15 13 35 35 H 1.08993 * 109.47632 * 29.99616 * 17 15 13 36 36 H 1.09006 * 109.46744 * 149.99960 * 17 15 13 37 37 H 1.09005 * 109.46668 * 55.00235 * 18 17 15 38 38 H 1.09005 * 109.46789 * 299.99384 * 19 18 17 39 39 H 1.09001 * 109.47244 * 59.99467 * 19 18 17 40 40 H 1.09004 * 109.47371 * 299.99592 * 20 19 18 41 41 H 1.09005 * 109.47067 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.47616 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47177 * 59.99899 * 21 20 19 44 44 H 1.09005 * 109.46789 * 299.99856 * 22 21 20 45 45 H 1.09001 * 109.47244 * 179.97438 * 22 21 20 46 46 H 1.08994 * 109.47758 * 300.00207 * 23 18 17 47 47 H 1.09005 * 109.47140 * 60.00501 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1622 2.0565 -1.1826 5 1 2.2702 1.5092 -2.1073 6 6 2.1692 3.4446 -1.1928 7 7 2.1909 4.1109 -0.0579 8 14 2.1477 4.3668 -2.8171 9 1 0.9210 4.0088 -3.5734 10 1 2.1601 5.8288 -2.5565 11 1 3.3456 3.9962 -3.6126 12 6 2.3527 2.0400 1.2651 13 6 1.1315 2.7380 1.8060 14 8 0.0849 2.6897 1.1952 15 7 1.2026 3.4161 2.9686 16 6 2.4667 3.4741 3.7067 17 6 0.0154 4.0943 3.4947 18 6 -0.0337 5.5263 2.9583 19 6 1.1582 6.3161 3.5027 20 6 1.1094 7.7478 2.9658 21 6 -0.1922 8.4162 3.4128 22 6 -1.3841 7.6265 2.8683 23 6 -1.3354 6.1942 3.4058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.1962 5.0809 -0.0650 30 1 3.1439 2.7704 1.0963 31 1 2.6934 1.2947 1.9838 32 1 2.5200 2.6366 4.4025 33 1 3.2996 3.4177 3.0059 34 1 2.5211 4.4110 4.2611 35 1 -0.8793 3.5574 3.1797 36 1 0.0618 4.1156 4.5836 37 1 0.0095 5.5080 1.8693 38 1 1.1150 6.3344 4.5918 39 1 2.0856 5.8402 3.1839 40 1 1.1529 7.7292 1.8767 41 1 1.9584 8.3106 3.3540 42 1 -0.2267 9.4364 3.0306 43 1 -0.2357 8.4350 4.5018 44 1 -1.3406 7.6077 1.7793 45 1 -2.3115 8.1024 3.1872 46 1 -2.1846 5.6317 3.0179 47 1 -1.3787 6.2126 4.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121041737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:22 Heat of formation + Delta-G solvation = -27.447818 kcal Electronic energy + Delta-G solvation = -24599.723134 eV Core-core repulsion = 21396.698792 eV Total energy + Delta-G solvation = -3203.024342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.08067 -37.72713 -35.48447 -34.11627 -31.73245 -31.35325 -30.42377 -28.99772 -27.09672 -26.32215 -24.35932 -23.25737 -22.29682 -21.13948 -20.22508 -19.39746 -18.14308 -16.64902 -15.67429 -15.50197 -15.10885 -14.79713 -14.13349 -13.99117 -13.80508 -13.58410 -13.47554 -13.27804 -12.49447 -12.27211 -12.15801 -11.97531 -11.89221 -11.61945 -11.52298 -11.39546 -11.17173 -11.04000 -10.84960 -10.83324 -10.68727 -10.58061 -10.35591 -10.11942 -10.03158 -9.84020 -9.76651 -9.65589 -9.61416 -8.67142 -8.09514 -7.50245 -6.70179 -5.71816 -3.10553 3.43124 3.48648 3.51675 4.09946 4.38512 4.63305 4.95363 5.03002 5.04746 5.41721 5.48449 5.52183 5.62036 5.68299 5.75362 5.77879 5.79044 5.82629 5.87768 5.90104 6.02827 6.19639 6.20702 6.21974 6.25667 6.31084 6.37187 6.43244 6.49930 6.51668 6.54687 6.58135 6.61778 6.73396 6.76931 6.87746 7.01342 7.11296 7.40545 7.49411 7.68511 7.81234 8.43168 8.70140 9.28211 9.82989 9.98637 10.37954 11.34552 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.006617 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.871006 B = 4230.469933 C = 5088.709896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 N -0.580 5.580 4 C -0.240 4.240 5 H 0.071 0.929 6 C 0.008 3.992 7 N -0.905 5.905 8 Si 0.906 3.094 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.287 1.287 12 C 0.168 3.832 13 C 0.535 3.465 14 O -0.537 6.537 15 N -0.631 5.631 16 C 0.089 3.911 17 C 0.130 3.870 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.253 0.747 30 H 0.118 0.882 31 H 0.021 0.979 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 3.623 10.747 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 N -0.301 5.301 4 C -0.369 4.369 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.552 5.552 8 Si 0.737 3.263 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.214 1.214 12 C 0.038 3.962 13 C 0.324 3.676 14 O -0.411 6.411 15 N -0.368 5.368 16 C -0.055 4.055 17 C 0.006 3.994 18 C -0.119 4.119 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.476 3.716 10.361 11.106 hybrid contribution -0.244 0.926 -0.816 1.259 sum -1.720 4.642 9.544 10.752 Atomic orbital electron populations 1.22328 0.99183 0.97679 1.02922 1.20833 0.92506 0.86654 0.98066 1.43804 1.74032 1.09829 1.02404 1.19155 1.42671 0.88877 0.86148 0.91117 1.24886 1.00659 0.96504 0.96762 1.69648 1.55529 1.06456 1.23562 0.86304 0.77748 0.78670 0.83561 1.21329 1.21845 1.21354 1.20776 0.95009 0.94736 0.85712 1.22020 0.91439 0.77224 0.76944 1.90474 1.32257 1.62211 1.56165 1.48024 1.09434 1.54920 1.24458 1.21622 0.87587 0.99879 0.96413 1.21147 0.90098 0.92019 0.96104 1.21523 0.93587 0.94510 1.02296 1.21601 0.99452 0.94732 0.98778 1.21516 0.96531 0.96295 1.01279 1.21512 0.95329 0.98317 1.00176 1.21513 0.97414 0.95735 1.00865 1.21518 0.98011 0.95455 0.99871 0.92454 0.93109 0.95809 0.94155 0.94776 0.93650 0.86451 0.96093 0.94721 0.90960 0.92443 0.91229 0.92834 0.89865 0.93270 0.90930 0.91918 0.92763 0.92790 0.92528 0.92053 0.92722 0.92301 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.65 37.15 0.36 -3.16 16 2 C 0.15 3.20 6.44 -4.04 -0.03 3.17 16 3 N -0.58 -14.70 2.07 -174.61 -0.36 -15.06 16 4 C -0.24 -6.59 9.70 -15.06 -0.15 -6.73 16 5 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 6 C 0.01 0.23 5.41 -17.43 -0.09 0.14 16 7 N -0.90 -24.64 8.21 55.49 0.46 -24.18 16 8 Si 0.91 22.40 29.56 -169.99 -5.02 17.38 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 C 0.17 3.93 4.02 -5.19 -0.02 3.91 16 13 C 0.53 12.54 5.63 -10.98 -0.06 12.48 16 14 O -0.54 -14.66 13.46 5.55 0.07 -14.58 16 15 N -0.63 -12.04 2.70 -181.57 -0.49 -12.53 16 16 C 0.09 1.37 9.31 59.85 0.56 1.92 16 17 C 0.13 2.25 4.90 -4.04 -0.02 2.23 16 18 C -0.10 -1.66 2.39 -90.62 -0.22 -1.88 16 19 C -0.11 -1.60 4.19 -26.73 -0.11 -1.71 16 20 C -0.12 -1.65 5.92 -26.74 -0.16 -1.81 16 21 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 22 C -0.12 -1.56 5.92 -26.70 -0.16 -1.71 16 23 C -0.11 -1.56 5.21 -26.71 -0.14 -1.70 16 24 H 0.06 1.36 6.38 -51.93 -0.33 1.02 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 28 H 0.03 0.67 7.84 -51.92 -0.41 0.26 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.12 2.94 5.50 -51.93 -0.29 2.65 16 31 H 0.02 0.44 7.83 -51.93 -0.41 0.04 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 34 H 0.06 0.77 5.98 -51.93 -0.31 0.46 16 35 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 36 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.19 5.90 -51.93 -0.31 0.88 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -30.25 353.38 -9.06 -39.31 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.65 Total: 0.79 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.40 Total: 3.55 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.40 Total: -51.77 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.07 Total: -14.58 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.25 -9.06 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121041737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.865 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds