Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47104 * 2 1 4 4 C 1.36932 * 120.00039 * 264.04747 * 3 2 1 5 5 H 1.08004 * 119.99875 * 188.10710 * 4 3 2 6 6 C 1.38810 * 120.00269 * 8.11249 * 4 3 2 7 7 N 1.31620 * 120.00219 * 25.05247 * 6 4 3 8 8 Si 1.86799 * 120.00046 * 205.05807 * 6 4 3 9 9 H 1.48499 * 109.47312 * 84.98898 * 8 6 4 10 10 H 1.48498 * 109.47139 * 204.98900 * 8 6 4 11 11 H 1.48505 * 109.47292 * 324.98908 * 8 6 4 12 12 C 1.46503 * 119.99649 * 84.04794 * 3 2 1 13 13 C 1.50700 * 109.46967 * 270.00029 * 12 3 2 14 14 O 1.21279 * 120.00040 * 359.97438 * 13 12 3 15 15 N 1.34778 * 119.99920 * 180.02562 * 13 12 3 16 16 C 1.46501 * 119.99727 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47306 * 120.00471 * 16 15 13 18 18 C 1.53008 * 109.47034 * 239.99978 * 16 15 13 19 19 C 1.46501 * 120.00022 * 179.97438 * 15 13 12 20 20 C 1.54959 * 110.92295 * 306.53815 * 19 15 13 21 21 C 1.54268 * 104.15809 * 156.29598 * 20 19 15 22 22 C 1.53869 * 106.63993 * 336.44581 * 21 20 19 23 23 C 1.54260 * 106.60088 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47381 * 299.99700 * 1 2 3 25 25 H 1.09001 * 109.47301 * 60.00034 * 1 2 3 26 26 H 1.09001 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47148 * 240.00551 * 2 1 3 28 28 H 1.09003 * 109.47380 * 120.00502 * 2 1 3 29 29 H 0.96994 * 120.00232 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46699 * 150.00145 * 12 3 2 31 31 H 1.08994 * 109.47249 * 29.99997 * 12 3 2 32 32 H 1.09000 * 109.47532 * 359.97438 * 16 15 13 33 33 H 1.09000 * 109.47342 * 59.99250 * 17 16 15 34 34 H 1.08993 * 109.47549 * 179.97438 * 17 16 15 35 35 H 1.09008 * 109.47006 * 299.99846 * 17 16 15 36 36 H 1.09000 * 109.46965 * 59.99924 * 18 16 15 37 37 H 1.08992 * 109.47175 * 179.97438 * 18 16 15 38 38 H 1.09000 * 109.46846 * 300.00279 * 18 16 15 39 39 H 1.09002 * 110.66908 * 183.23513 * 19 15 13 40 40 H 1.08998 * 110.47901 * 37.64652 * 20 19 15 41 41 H 1.08995 * 110.52952 * 274.97574 * 20 19 15 42 42 H 1.09004 * 110.03051 * 217.13767 * 21 20 19 43 43 H 1.08996 * 110.03285 * 95.75611 * 21 20 19 44 44 H 1.09001 * 110.03320 * 119.26444 * 22 21 20 45 45 H 1.09006 * 110.03545 * 240.64235 * 22 21 20 46 46 H 1.08997 * 110.48893 * 142.28985 * 23 22 21 47 47 H 1.09001 * 110.48761 * 264.93140 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3625 1.9858 -1.1795 5 1 2.8439 2.9525 -1.1704 6 6 2.0925 1.3562 -2.3868 7 7 1.1171 0.4761 -2.4664 8 14 3.1136 1.7579 -3.8985 9 1 4.3427 0.9245 -3.9015 10 1 2.3203 1.4744 -5.1213 11 1 3.4898 3.1943 -3.8744 12 6 2.1384 2.1157 1.2620 13 6 0.8473 2.8385 1.5473 14 8 -0.0816 2.7494 0.7726 15 7 0.7251 3.5848 2.6629 16 6 1.8474 3.6929 3.5984 17 6 2.2655 5.1590 3.7261 18 6 1.4216 3.1628 4.9691 19 6 -0.5299 4.2880 2.9400 20 6 -0.9471 5.1706 1.7366 21 6 -2.4732 5.3299 1.8967 22 6 -2.9557 4.1331 2.7348 23 6 -1.7062 3.2869 3.0548 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.9287 0.0359 -3.3099 30 1 2.9504 2.8387 1.1856 31 1 2.3496 1.4162 2.0707 32 1 2.6876 3.1060 3.2273 33 1 1.4252 5.7455 4.0974 34 1 3.1002 5.2395 4.4225 35 1 2.5689 5.5367 2.7496 36 1 1.1236 2.1182 4.8782 37 1 2.2566 3.2427 5.6650 38 1 0.5812 3.7493 5.3404 39 1 -0.4430 4.8875 3.8462 40 1 -0.7124 4.6701 0.7972 41 1 -0.4549 6.1418 1.7860 42 1 -2.9543 5.3191 0.9187 43 1 -2.6990 6.2627 2.4133 44 1 -3.4150 4.4851 3.6585 45 1 -3.6717 3.5418 2.1639 46 1 -1.7670 2.8840 4.0658 47 1 -1.5944 2.4819 2.3285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121048292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -10.025894 kcal Electronic energy + Delta-G solvation = -24654.759779 eV Core-core repulsion = 21452.490908 eV Total energy + Delta-G solvation = -3202.268870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88823 -36.98726 -35.90256 -35.21262 -31.25416 -31.05362 -29.56744 -28.42379 -27.86403 -27.11081 -25.82266 -23.24639 -21.54774 -21.24131 -20.13574 -20.01534 -17.91954 -16.75619 -16.62001 -15.74017 -15.02209 -14.79416 -14.54724 -14.02791 -13.70399 -13.51163 -13.35966 -13.20745 -13.01332 -12.59618 -12.44265 -12.18112 -11.75014 -11.62944 -11.52254 -11.35452 -11.17053 -10.98427 -10.89620 -10.82131 -10.78563 -10.69739 -10.66461 -10.49355 -10.33268 -10.06523 -9.86873 -9.59957 -9.23711 -8.63261 -8.18388 -8.00509 -6.80550 -5.65973 -2.97646 3.42562 3.49324 3.52728 3.54786 3.60715 4.56792 4.84460 4.88297 4.92991 5.12637 5.20578 5.23970 5.34586 5.46606 5.56581 5.57988 5.66593 5.72117 5.73049 5.82097 5.85912 5.89555 5.92834 5.98499 6.16511 6.17022 6.18838 6.20633 6.27939 6.29148 6.31167 6.54144 6.59842 6.71253 6.77137 7.09550 7.25171 7.28532 7.34902 7.73586 7.91647 8.12694 8.37106 8.43683 9.20055 9.32416 9.92690 10.36566 11.37114 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.005805 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.259062 B = 4822.251451 C = 5212.697990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.569 5.569 4 C -0.246 4.246 5 H 0.072 0.928 6 C 0.000 4.000 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.132 3.868 13 C 0.473 3.527 14 O -0.494 6.494 15 N -0.618 5.618 16 C 0.131 3.869 17 C -0.161 4.161 18 C -0.161 4.161 19 C 0.149 3.851 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.135 4.135 24 H 0.017 0.983 25 H 0.091 0.909 26 H 0.008 0.992 27 H 0.089 0.911 28 H -0.001 1.001 29 H 0.250 0.750 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 7.076 15.141 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 N -0.288 5.288 4 C -0.375 4.375 5 H 0.090 0.910 6 C -0.197 4.197 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.209 1.209 12 C -0.001 4.001 13 C 0.259 3.741 14 O -0.366 6.366 15 N -0.356 5.356 16 C 0.027 3.973 17 C -0.220 4.220 18 C -0.219 4.219 19 C 0.044 3.956 20 C -0.180 4.180 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.174 4.174 24 H 0.036 0.964 25 H 0.110 0.890 26 H 0.027 0.973 27 H 0.107 0.893 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.530 6.873 14.485 16.105 hybrid contribution 0.209 0.422 -0.617 0.776 sum -1.322 7.294 13.868 15.725 Atomic orbital electron populations 1.22247 0.98543 0.96961 1.02130 1.20914 0.93054 0.83878 0.97965 1.44249 1.73889 1.09632 1.00986 1.19201 1.31244 1.03490 0.83545 0.91012 1.24722 0.97718 1.00118 0.97174 1.70220 1.27077 1.31325 1.24664 0.86358 0.80280 0.77755 0.82778 1.21615 1.22013 1.20853 1.20965 0.93175 0.95067 0.90855 1.23422 0.92926 0.78503 0.79260 1.90625 1.40568 1.59795 1.45604 1.48599 1.12890 1.50619 1.23461 1.21057 0.89818 0.96608 0.89850 1.22176 1.01178 0.96356 1.02241 1.22177 1.01478 1.01666 0.96570 1.21796 0.83957 0.92705 0.97123 1.22808 0.94779 0.98822 1.01565 1.21986 0.96242 0.97382 0.99878 1.21989 0.97709 0.96768 0.99045 1.22709 0.93999 0.99452 1.01207 0.96371 0.89029 0.97319 0.89261 0.98263 0.93946 0.91182 0.91865 0.88864 0.92673 0.91952 0.92129 0.92251 0.91958 0.92652 0.90344 0.88322 0.92854 0.92021 0.92734 0.92667 0.92053 0.92778 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.71 37.16 0.32 -3.21 16 2 C 0.17 4.17 5.64 -4.04 -0.02 4.15 16 3 N -0.57 -14.26 2.12 -174.61 -0.37 -14.63 16 4 C -0.25 -6.77 9.70 -15.06 -0.15 -6.92 16 5 H 0.07 1.95 7.93 -52.48 -0.42 1.54 16 6 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16 7 N -0.89 -25.73 8.59 55.49 0.48 -25.25 16 8 Si 0.90 22.03 29.62 -169.99 -5.04 17.00 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.13 2.66 4.50 -5.19 -0.02 2.63 16 13 C 0.47 9.44 6.69 -10.99 -0.07 9.36 16 14 O -0.49 -11.87 10.10 5.56 0.06 -11.81 16 15 N -0.62 -9.53 2.43 -156.30 -0.38 -9.91 16 16 C 0.13 1.56 3.12 -67.93 -0.21 1.35 16 17 C -0.16 -1.66 9.18 37.16 0.34 -1.32 16 18 C -0.16 -1.61 9.19 37.16 0.34 -1.27 16 19 C 0.15 2.15 2.43 -65.90 -0.16 1.99 16 20 C -0.14 -2.23 6.18 -25.03 -0.15 -2.38 16 21 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16 22 C -0.12 -1.57 6.80 -25.62 -0.17 -1.75 16 23 C -0.14 -2.04 6.22 -25.07 -0.16 -2.19 16 24 H 0.02 0.44 6.42 -51.93 -0.33 0.10 16 25 H 0.09 2.67 6.35 -51.93 -0.33 2.34 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 2.46 5.83 -51.92 -0.30 2.15 16 28 H 0.00 -0.02 7.98 -51.93 -0.41 -0.43 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.32 7.67 -51.93 -0.40 0.92 16 31 H 0.06 1.13 7.60 -51.93 -0.39 0.74 16 32 H 0.09 1.11 5.77 -51.93 -0.30 0.81 16 33 H 0.05 0.55 7.01 -51.93 -0.36 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 39 H 0.08 0.98 6.21 -51.93 -0.32 0.65 16 40 H 0.10 1.99 5.64 -51.93 -0.29 1.70 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.66 6.18 -51.93 -0.32 1.34 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -30.68 349.84 -8.70 -39.39 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.35 Total: 1.35 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.38 Total: -1.40 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.27 Total: -49.79 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.04 Total: 17.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.68 -8.70 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121048292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.360 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds