Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47150 * 2 1 4 4 C 1.46501 * 119.99916 * 269.99674 * 3 2 1 5 5 C 1.50696 * 109.47641 * 270.00168 * 4 3 2 6 6 H 1.08004 * 119.99448 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00066 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46835 * 60.00179 * 9 7 5 11 11 H 1.48501 * 109.47194 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47240 * 300.00588 * 9 7 5 13 13 C 1.34774 * 119.99979 * 90.00298 * 3 2 1 14 14 O 1.21283 * 120.00054 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00075 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47223 * 180.02562 * 15 13 3 17 17 C 1.46850 * 110.99956 * 65.78880 * 16 15 13 18 18 C 1.53040 * 109.52419 * 185.84140 * 17 16 15 19 19 C 1.53120 * 109.27503 * 300.82105 * 18 17 16 20 20 H 1.09002 * 109.52503 * 297.75113 * 19 18 17 21 21 C 1.53005 * 109.57370 * 177.59141 * 19 18 17 22 22 C 1.53117 * 109.16267 * 57.65831 * 19 18 17 23 23 H 1.08994 * 109.50675 * 182.40217 * 22 19 18 24 24 C 1.52995 * 109.50330 * 62.28035 * 22 19 18 25 25 C 1.46841 * 111.00281 * 190.00192 * 16 15 13 26 26 H 1.08996 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46748 * 300.00078 * 1 2 3 28 28 H 1.08997 * 109.47028 * 59.99593 * 1 2 3 29 29 H 1.09003 * 109.47198 * 240.00127 * 2 1 3 30 30 H 1.09005 * 109.47516 * 120.00010 * 2 1 3 31 31 H 1.09002 * 109.47046 * 30.00763 * 4 3 2 32 32 H 1.09007 * 109.46776 * 149.99866 * 4 3 2 33 33 H 0.97001 * 120.00340 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46951 * 60.00740 * 15 13 3 35 35 H 1.08997 * 109.47016 * 300.00211 * 15 13 3 36 36 H 1.09002 * 109.46123 * 305.85896 * 17 16 15 37 37 H 1.08999 * 109.45959 * 65.82235 * 17 16 15 38 38 H 1.09002 * 109.49908 * 180.88476 * 18 17 16 39 39 H 1.08999 * 109.50429 * 60.75978 * 18 17 16 40 40 H 1.09001 * 109.46902 * 300.16140 * 21 19 18 41 41 H 1.09001 * 109.46838 * 60.15699 * 21 19 18 42 42 H 1.09000 * 109.47234 * 180.16331 * 21 19 18 43 43 H 1.09000 * 109.47139 * 60.00297 * 24 22 19 44 44 H 1.09006 * 109.47320 * 179.97438 * 24 22 19 45 45 H 1.09004 * 109.47493 * 300.00285 * 24 22 19 46 46 H 1.08998 * 109.46320 * 54.14149 * 25 16 15 47 47 H 1.08998 * 109.45897 * 294.17759 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6181 9 14 5.9135 2.0967 -3.4170 10 1 6.1417 0.6400 -3.5937 11 1 6.1610 2.7966 -4.7031 12 1 6.8407 2.6209 -2.3823 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2064 3.5889 17 6 1.3867 3.3485 3.6230 18 6 1.8346 4.3356 4.7034 19 6 1.8497 3.6270 6.0606 20 1 0.8412 3.2973 6.3106 21 6 2.3540 4.5908 7.1366 22 6 2.7804 2.4136 5.9838 23 1 2.7624 1.8803 6.9342 24 6 4.2064 2.8816 5.6867 25 6 2.3051 1.4822 4.8663 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1411 -1.1384 33 1 3.6749 3.5155 -4.4444 34 1 2.6213 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 1.3887 3.8460 2.6531 37 1 0.3802 2.9958 3.8480 38 1 1.1408 5.1755 4.7390 39 1 2.8357 4.6993 4.4716 40 1 3.3624 4.9199 6.8857 41 1 1.6922 5.4553 7.1890 42 1 2.3668 4.0839 8.1014 43 1 4.5431 3.5477 6.4811 44 1 4.8686 2.0175 5.6325 45 1 4.2236 3.4132 4.7352 46 1 2.9740 0.6242 4.7994 47 1 1.2943 1.1383 5.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122812262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -43.852375 kcal Electronic energy + Delta-G solvation = -23658.197505 eV Core-core repulsion = 20454.461809 eV Total energy + Delta-G solvation = -3203.735697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87794 -38.54963 -35.36012 -34.57345 -32.74348 -31.65422 -30.07279 -29.38319 -27.61659 -26.61670 -25.10120 -22.99467 -22.68337 -22.47546 -21.47990 -18.48122 -18.21056 -16.54671 -16.28608 -16.05084 -15.24504 -15.14088 -14.67109 -14.38266 -14.22203 -14.07456 -13.80458 -13.32955 -12.98448 -12.88484 -12.75425 -12.35766 -12.22879 -11.95895 -11.88729 -11.77103 -11.51825 -11.33229 -11.20525 -11.14360 -10.89831 -10.84478 -10.68481 -10.51510 -10.43492 -10.15260 -10.09600 -10.03672 -9.57945 -8.76855 -8.39129 -8.02034 -7.57692 -6.00117 -4.04473 3.34874 3.39225 3.41791 3.52121 3.73900 4.27487 4.49623 4.69196 4.77175 4.81522 5.08723 5.25723 5.28602 5.33257 5.35321 5.39957 5.47076 5.49851 5.58934 5.59913 5.63607 5.70025 5.73596 5.80666 5.82575 5.84030 5.96287 5.99443 6.03576 6.05294 6.23064 6.24990 6.26980 6.38450 6.42860 6.49035 6.68146 7.04206 7.24749 7.31679 7.49721 7.62067 7.96978 8.28746 8.50371 8.95868 9.20374 9.60688 11.07879 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.004319 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.655449 B = 6481.213813 C = 7125.853923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.515 5.515 17 C 0.052 3.948 18 C -0.109 4.109 19 C -0.090 4.090 20 H 0.062 0.938 21 C -0.147 4.147 22 C -0.080 4.080 23 H 0.067 0.933 24 C -0.143 4.143 25 C 0.060 3.940 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 -4.609 18.245 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.130 3.870 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.239 5.239 17 C -0.076 4.076 18 C -0.147 4.147 19 C -0.109 4.109 20 H 0.080 0.920 21 C -0.204 4.204 22 C -0.099 4.099 23 H 0.086 0.914 24 C -0.200 4.200 25 C -0.068 4.068 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.088 -3.694 17.970 19.039 hybrid contribution 0.083 -0.694 -0.300 0.760 sum -5.006 -4.388 17.671 18.883 Atomic orbital electron populations 1.22219 0.96974 1.01295 1.02192 1.21386 0.93346 0.84442 1.02546 1.48266 1.64151 1.13193 1.07731 1.19221 0.96137 0.93562 0.78123 1.21412 0.96982 1.31796 1.06142 0.92544 1.24923 0.97770 0.94955 0.96416 1.69921 1.35718 1.33544 1.14357 0.86575 0.84955 0.78197 0.77786 1.20301 1.21228 1.20166 1.20142 0.78761 0.87141 0.84707 1.90632 1.44633 1.17880 1.86759 1.22047 1.00116 0.96179 0.90997 1.61502 1.52415 1.08562 1.01463 1.22259 0.91769 0.92067 1.01487 1.21641 1.02665 0.97273 0.93124 1.21214 0.98528 0.95555 0.95554 0.91993 1.21868 1.01593 0.98949 0.97996 1.21148 0.96241 0.95527 0.97000 0.91445 1.21832 0.94623 1.01027 1.02552 1.22130 0.99071 0.96170 0.89389 0.92258 0.93299 0.92034 0.89994 0.91942 0.95202 0.94003 0.92734 0.88704 0.92909 0.88363 0.96159 0.92017 0.90482 0.92102 0.93005 0.93110 0.93362 0.93359 0.90544 0.90919 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.69 2.46 -175.05 -0.43 -13.12 16 4 C 0.25 6.53 5.16 -5.20 -0.03 6.51 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.58 7.35 -10.99 -0.08 10.49 16 14 O -0.52 -13.13 13.91 5.55 0.08 -13.05 16 15 C 0.04 0.58 4.00 -4.98 -0.02 0.57 16 16 N -0.51 -7.77 3.68 -236.11 -0.87 -8.64 16 17 C 0.05 0.77 5.11 -3.83 -0.02 0.75 16 18 C -0.11 -1.40 5.03 -26.65 -0.13 -1.53 16 19 C -0.09 -0.96 2.56 -90.49 -0.23 -1.19 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.35 8.80 37.16 0.33 -1.02 16 22 C -0.08 -0.87 2.77 -90.54 -0.25 -1.12 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 C -0.14 -1.68 8.34 37.16 0.31 -1.37 16 25 C 0.06 0.72 4.90 -3.83 -0.02 0.70 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.33 7.25 -51.93 -0.38 0.95 16 35 H 0.05 0.72 7.17 -51.93 -0.37 0.35 16 36 H 0.10 1.81 5.78 -51.93 -0.30 1.51 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.10 6.58 -51.93 -0.34 0.76 16 40 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.50 6.39 -51.93 -0.33 0.17 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.10 6.01 -51.93 -0.31 0.79 16 46 H 0.07 0.81 8.02 -51.93 -0.42 0.40 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -32.16 357.55 -8.82 -40.97 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.49 Total: -1.47 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.21 Total: -1.07 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.56 Total: -47.88 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.16 -8.82 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122812262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.882 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds