Wall clock time and date at job start Tue Mar 31 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47156 * 2 1 4 4 C 1.46506 * 119.99811 * 90.00429 * 3 2 1 5 5 C 1.50703 * 109.47289 * 89.99713 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 3 2 1 14 14 O 1.21279 * 119.99362 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46979 * 179.97438 * 15 13 3 17 17 C 1.46845 * 110.99937 * 66.04483 * 16 15 13 18 18 C 1.53042 * 109.52073 * 174.15988 * 17 16 15 19 19 C 1.53123 * 109.27790 * 59.18383 * 18 17 16 20 20 H 1.08998 * 109.52081 * 62.24909 * 19 18 17 21 21 C 1.52996 * 109.52097 * 182.37711 * 19 18 17 22 22 C 1.53119 * 109.15807 * 302.34245 * 19 18 17 23 23 H 1.09003 * 109.50456 * 297.67534 * 22 19 18 24 24 C 1.52999 * 109.50234 * 177.59790 * 22 19 18 25 25 C 1.46853 * 111.00029 * 301.83640 * 16 15 13 26 26 H 1.08997 * 109.47280 * 59.99767 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47195 * 299.99586 * 1 2 3 29 29 H 1.09006 * 109.46591 * 239.99755 * 2 1 3 30 30 H 1.09005 * 109.46719 * 120.00515 * 2 1 3 31 31 H 1.09001 * 109.47060 * 210.00163 * 4 3 2 32 32 H 1.09004 * 109.47073 * 329.99652 * 4 3 2 33 33 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47440 * 299.99997 * 15 13 3 35 35 H 1.09001 * 109.47288 * 59.99909 * 15 13 3 36 36 H 1.09000 * 109.46687 * 294.17282 * 17 16 15 37 37 H 1.09003 * 109.46135 * 54.16066 * 17 16 15 38 38 H 1.09002 * 109.50087 * 179.11728 * 18 17 16 39 39 H 1.08994 * 109.50591 * 299.23927 * 18 17 16 40 40 H 1.08996 * 109.47705 * 59.99477 * 21 19 18 41 41 H 1.09004 * 109.47200 * 179.97438 * 21 19 18 42 42 H 1.09008 * 109.47311 * 299.99224 * 21 19 18 43 43 H 1.09000 * 109.47028 * 59.99870 * 24 22 19 44 44 H 1.08994 * 109.47275 * 179.97438 * 24 22 19 45 45 H 1.08999 * 109.47169 * 300.00160 * 24 22 19 46 46 H 1.09003 * 109.45941 * 305.85952 * 25 16 15 47 47 H 1.08997 * 109.45986 * 65.82370 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3428 1.2307 1.0957 7 6 4.1495 2.3902 2.8775 8 7 3.3495 3.1263 3.6177 9 14 5.9135 2.0960 3.4171 10 1 6.8413 2.6184 2.3820 11 1 6.1610 2.7962 4.7031 12 1 6.1402 0.6394 3.5954 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1670 15 6 1.9912 1.3063 -2.4723 16 7 2.3090 2.2065 -3.5888 17 6 3.7452 2.5102 -3.6276 18 6 4.0612 3.3280 -4.8820 19 6 3.2469 4.6245 -4.8587 20 1 3.5358 5.2206 -3.9931 21 6 3.5137 5.4189 -6.1388 22 6 1.7574 4.2808 -4.7694 23 1 1.4599 3.7185 -5.6545 24 6 0.9397 5.5712 -4.6852 25 6 1.5081 3.4354 -3.5183 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0956 3.1409 1.1385 32 1 1.5817 1.6876 2.0285 33 1 3.6756 3.5168 4.4435 34 1 2.6210 0.4186 -2.5303 35 1 0.9432 1.0126 -2.5298 36 1 4.0193 3.0833 -2.7419 37 1 4.3127 1.5798 -3.6483 38 1 5.1246 3.5666 -4.9024 39 1 3.8002 2.7501 -5.7685 40 1 3.2226 4.8229 -7.0037 41 1 2.9333 6.3414 -6.1216 42 1 4.5752 5.6583 -6.2032 43 1 1.1203 6.1745 -5.5749 44 1 -0.1205 5.3260 -4.6221 45 1 1.2366 6.1324 -3.7993 46 1 0.4508 3.1770 -3.4593 47 1 1.7928 4.0041 -2.6331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122812505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:13 Heat of formation + Delta-G solvation = -47.389357 kcal Electronic energy + Delta-G solvation = -23883.139369 eV Core-core repulsion = 20679.250297 eV Total energy + Delta-G solvation = -3203.889072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02518 -38.25310 -35.50266 -34.40788 -32.79377 -31.98449 -30.10618 -29.31713 -27.47680 -26.49575 -25.02148 -23.04809 -22.53376 -22.01931 -21.09529 -19.45715 -18.33482 -16.60008 -16.31285 -15.86528 -15.24592 -14.81850 -14.62102 -14.30471 -14.25569 -14.06106 -13.78520 -13.38329 -13.08215 -12.84214 -12.48181 -12.20149 -12.03658 -11.96411 -11.85702 -11.71992 -11.52195 -11.49681 -11.24700 -11.11441 -10.92993 -10.70988 -10.57313 -10.52820 -10.37653 -10.14143 -9.97922 -9.94556 -9.64668 -9.53203 -8.44565 -7.71199 -7.58814 -6.05506 -4.10361 3.30188 3.34104 3.34992 3.40635 3.96642 4.17106 4.43615 4.83282 4.91172 4.96123 5.13186 5.21862 5.29113 5.33903 5.47804 5.53071 5.59023 5.63062 5.67200 5.69619 5.73599 5.76460 5.81100 5.82222 5.91547 5.97522 6.04120 6.09945 6.15150 6.21913 6.24948 6.32568 6.35709 6.42803 6.48090 6.50849 6.73315 7.03066 7.25862 7.33984 7.43783 7.55270 7.90779 8.22736 8.42393 8.88672 9.08121 9.54810 11.02480 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.004897 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.661826 B = 5716.147452 C = 6501.399452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.474 3.526 14 O -0.539 6.539 15 C 0.033 3.967 16 N -0.515 5.515 17 C 0.040 3.960 18 C -0.105 4.105 19 C -0.089 4.089 20 H 0.070 0.930 21 C -0.145 4.145 22 C -0.078 4.078 23 H 0.069 0.931 24 C -0.147 4.147 25 C 0.037 3.963 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -2.529 -16.117 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.260 3.740 14 O -0.418 6.418 15 C -0.099 4.099 16 N -0.238 5.238 17 C -0.088 4.088 18 C -0.143 4.143 19 C -0.108 4.108 20 H 0.088 0.912 21 C -0.202 4.202 22 C -0.097 4.097 23 H 0.087 0.913 24 C -0.205 4.205 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.482 -2.062 -16.363 17.091 hybrid contribution 1.133 0.078 1.284 1.714 sum -3.349 -1.984 -15.079 15.574 Atomic orbital electron populations 1.22211 0.96772 1.01437 1.02255 1.21416 0.93523 0.84254 1.02665 1.48422 1.63101 1.13182 1.08017 1.19238 0.96165 0.93567 0.78385 1.21377 0.96899 1.31894 1.06248 0.92656 1.24927 0.97793 0.94920 0.96395 1.69923 1.35710 1.33411 1.14354 0.86575 0.84849 0.78261 0.77832 1.20236 1.21159 1.20245 1.21657 0.78611 0.87485 0.86225 1.90553 1.46255 1.18194 1.86821 1.22321 1.03091 0.96883 0.87607 1.62434 1.06209 1.15699 1.39457 1.22253 0.88232 0.99626 0.98711 1.21579 0.98979 0.95693 0.98078 1.21199 0.95085 0.96327 0.98188 0.91152 1.21858 1.01034 0.99893 0.97460 1.21113 0.94603 0.95596 0.98363 0.91253 1.21835 0.99548 0.97355 1.01733 1.22484 0.96601 0.91050 0.98958 0.93072 0.92129 0.92132 0.91670 0.90027 0.94083 0.95223 0.92687 0.88623 0.88617 0.91560 0.91751 0.91982 0.91817 0.92970 0.92670 0.93069 0.92593 0.92954 0.92577 0.92108 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.35 2.46 -175.05 -0.43 -12.78 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.47 9.56 7.09 -10.99 -0.08 9.48 16 14 O -0.54 -12.89 11.20 5.56 0.06 -12.83 16 15 C 0.03 0.50 4.41 -4.98 -0.02 0.48 16 16 N -0.52 -7.87 4.86 -236.11 -1.15 -9.01 16 17 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 18 C -0.11 -1.37 5.38 -26.65 -0.14 -1.52 16 19 C -0.09 -1.15 2.29 -90.50 -0.21 -1.35 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.15 -1.51 8.90 37.16 0.33 -1.18 16 22 C -0.08 -1.00 2.39 -90.54 -0.22 -1.22 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 C -0.15 -1.69 8.90 37.16 0.33 -1.36 16 25 C 0.04 0.56 4.26 -3.83 -0.02 0.55 16 26 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.10 1.32 7.32 -51.93 -0.38 0.94 16 35 H 0.10 1.28 7.18 -51.93 -0.37 0.90 16 36 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 37 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.54 6.52 -51.93 -0.34 0.20 16 42 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 47 H 0.08 1.54 5.36 -51.93 -0.28 1.27 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -31.36 357.39 -9.11 -40.47 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.57 Total: 0.67 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.13 Total: -2.87 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.84 Total: -47.71 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.06 Total: -12.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.36 -9.11 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122812505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.923 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds