Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47292 * 2 1 4 4 C 1.46849 * 111.00375 * 294.21124 * 3 2 1 5 5 C 1.53035 * 109.52619 * 174.16079 * 4 3 2 6 6 C 1.53116 * 109.27884 * 59.17925 * 5 4 3 7 7 N 1.46899 * 109.52300 * 182.44376 * 6 5 4 8 8 C 1.46898 * 111.00522 * 58.63695 * 7 6 5 9 9 C 1.46903 * 110.99776 * 294.68135 * 7 6 5 10 10 C 1.53005 * 109.46847 * 209.44702 * 9 7 6 11 11 C 1.52993 * 109.47560 * 300.49717 * 10 9 7 12 12 C 1.53001 * 109.46963 * 60.50163 * 10 9 7 13 13 C 1.53003 * 109.46707 * 180.49696 * 10 9 7 14 14 C 1.50702 * 109.46981 * 180.02562 * 13 10 9 15 15 H 1.07998 * 119.99691 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00035 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99765 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47059 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46649 * 120.00217 * 18 16 14 21 21 H 1.48502 * 109.47023 * 240.00242 * 18 16 14 22 22 C 1.53127 * 109.16071 * 302.34537 * 6 5 4 23 23 C 1.46853 * 111.00192 * 170.00042 * 3 2 1 24 24 H 1.09006 * 109.46859 * 300.00043 * 1 2 3 25 25 H 1.09000 * 109.46840 * 59.99329 * 1 2 3 26 26 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47057 * 240.00308 * 2 1 3 28 28 H 1.08999 * 109.46932 * 120.00126 * 2 1 3 29 29 H 1.08998 * 109.46009 * 294.17390 * 4 3 2 30 30 H 1.08998 * 109.46189 * 54.14338 * 4 3 2 31 31 H 1.09004 * 109.49933 * 299.24079 * 5 4 3 32 32 H 1.08998 * 109.50568 * 179.12568 * 5 4 3 33 33 H 1.08997 * 109.52472 * 62.25330 * 6 5 4 34 34 H 1.09000 * 109.46930 * 66.43042 * 8 7 6 35 35 H 1.08997 * 109.47506 * 186.43641 * 8 7 6 36 36 H 1.09005 * 109.46815 * 306.43667 * 8 7 6 37 37 H 1.08994 * 109.46927 * 329.44683 * 9 7 6 38 38 H 1.08998 * 109.47244 * 89.45360 * 9 7 6 39 39 H 1.08999 * 109.47391 * 68.60604 * 11 10 9 40 40 H 1.08999 * 109.47459 * 188.61112 * 11 10 9 41 41 H 1.09008 * 109.46999 * 308.61010 * 11 10 9 42 42 H 1.08992 * 109.47532 * 59.99333 * 12 10 9 43 43 H 1.09004 * 109.46796 * 179.97438 * 12 10 9 44 44 H 1.09002 * 109.46985 * 299.99514 * 12 10 9 45 45 H 1.09008 * 109.47051 * 299.99781 * 13 10 9 46 46 H 1.08999 * 109.47224 * 60.00287 * 13 10 9 47 47 H 0.97002 * 120.00100 * 179.97438 * 17 16 14 48 48 H 1.09000 * 109.50495 * 297.71126 * 22 6 5 49 49 H 1.08995 * 109.53517 * 177.61386 * 22 6 5 50 50 H 1.09003 * 109.45795 * 305.86109 * 23 3 2 51 51 H 1.09004 * 109.45833 * 65.83498 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6651 2.0686 -1.2503 5 6 2.0608 3.5439 -1.1566 6 6 3.5677 3.6482 -0.9057 7 7 3.9439 5.0603 -0.7565 8 6 3.2112 5.6862 0.3522 9 6 3.7319 5.7968 -2.0098 10 6 4.7342 6.9493 -2.0999 11 6 4.5417 7.8872 -0.9065 12 6 6.1580 6.3894 -2.0840 13 6 4.5053 7.7238 -3.3994 14 6 5.4929 8.8587 -3.4884 15 1 6.2121 9.0118 -2.6975 16 6 5.4789 9.7007 -4.5801 17 7 4.6033 9.5138 -5.5434 18 14 6.7026 11.1078 -4.6901 19 1 7.5732 11.1018 -3.4870 20 1 7.5385 10.9428 -5.9063 21 1 5.9692 12.3969 -4.7645 22 6 3.9175 2.8873 0.3763 23 6 3.4681 1.4311 0.2381 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1943 1.6028 -2.0816 30 1 0.5904 1.9906 -1.4147 31 1 1.5215 4.0137 -0.3340 32 1 1.8116 4.0476 -2.0906 33 1 4.1079 3.2132 -1.7465 34 1 3.5270 5.2389 1.2947 35 1 3.4215 6.7556 0.3690 36 1 2.1414 5.5284 0.2156 37 1 3.8751 5.1239 -2.8553 38 1 2.7176 6.1951 -2.0301 39 1 4.8517 7.3806 0.0075 40 1 5.1454 8.7837 -1.0478 41 1 3.4906 8.1654 -0.8290 42 1 6.2952 5.7212 -2.9341 43 1 6.8720 7.2105 -2.1486 44 1 6.3211 5.8376 -1.1582 45 1 4.6426 7.0556 -4.2496 46 1 3.4910 8.1227 -3.4107 47 1 4.5932 10.1064 -6.3113 48 1 3.4075 3.3469 1.2229 49 1 4.9949 2.9218 0.5381 50 1 3.7028 0.8899 1.1547 51 1 3.9888 0.9684 -0.6004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125294158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -2.722002 kcal Electronic energy + Delta-G solvation = -23861.788500 eV Core-core repulsion = 20795.669444 eV Total energy + Delta-G solvation = -3066.119055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83418 -37.83259 -35.47651 -32.85265 -31.90949 -30.94230 -29.25104 -27.63135 -26.88449 -25.96056 -24.76551 -23.52785 -23.17378 -21.90021 -20.96456 -19.25417 -17.80319 -16.43133 -16.15199 -15.59269 -15.43842 -14.70310 -14.60508 -14.39266 -14.12106 -13.85280 -13.47804 -13.30792 -13.00565 -12.76026 -12.56934 -12.35838 -12.03899 -11.97362 -11.85428 -11.83199 -11.39420 -11.24125 -11.07713 -10.99815 -10.81005 -10.67837 -10.57277 -10.51465 -10.40945 -10.26419 -10.21829 -9.90406 -9.54070 -8.89527 -8.78335 -8.49773 -8.28546 -7.79315 -5.93072 -3.92560 3.34449 3.42246 3.46073 3.69969 4.23156 4.52488 4.65954 4.75529 4.91943 4.95569 5.07437 5.18131 5.22920 5.31494 5.42569 5.44062 5.47700 5.51307 5.63498 5.64514 5.68040 5.69504 5.77134 5.83068 5.92200 5.94153 5.98253 6.06045 6.10973 6.17370 6.25607 6.37167 6.39465 6.43253 6.64227 6.76887 6.87218 6.91793 6.92019 6.94338 7.29204 7.30794 7.34891 7.50662 7.58176 7.75869 7.91274 8.08090 8.53359 9.13257 9.69991 11.18708 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.003247 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.445012 B = 8620.244920 C = 8901.131597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.152 4.152 6 C 0.085 3.915 7 N -0.526 5.526 8 C -0.001 4.001 9 C 0.067 3.933 10 C -0.051 4.051 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.503 4.503 15 H 0.060 0.940 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.107 4.107 23 C 0.058 3.942 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.257 0.743 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -17.420 12.141 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.191 4.191 6 C -0.024 4.024 7 N -0.248 5.248 8 C -0.149 4.149 9 C -0.061 4.061 10 C -0.052 4.052 11 C -0.188 4.188 12 C -0.172 4.172 13 C -0.005 4.005 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.145 4.145 23 C -0.071 4.071 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.572 -17.071 12.472 21.863 hybrid contribution 0.038 0.317 -1.203 1.245 sum -5.534 -16.754 11.268 20.935 Atomic orbital electron populations 1.21810 0.94965 1.01365 1.02563 1.22044 0.96092 0.89067 1.00531 1.61980 1.14060 1.15110 1.35315 1.22059 1.00611 0.94563 0.89711 1.22317 0.98646 0.95656 1.02467 1.21805 0.92993 0.89822 0.97815 1.62192 1.56172 1.00691 1.05740 1.22969 0.95620 1.01987 0.94275 1.22295 0.97943 0.95935 0.89883 1.20548 0.94041 0.92951 0.97623 1.21980 1.00031 0.99847 0.96947 1.21585 0.96544 0.99663 0.99428 1.19134 0.96724 0.94284 0.90344 1.21290 1.16421 1.11865 1.04607 0.92206 1.25019 0.95808 0.97827 0.96019 1.69978 1.35855 1.38546 1.09477 0.86622 0.81447 0.82544 0.77914 1.19759 1.21208 1.21218 1.21631 1.01264 0.93495 0.98120 1.22084 0.87068 0.97569 1.00351 0.91861 0.92631 0.92460 0.95147 0.90949 0.95068 0.90768 0.90665 0.91406 0.90715 0.92207 0.89209 0.95794 0.92150 0.94942 0.93545 0.91960 0.94465 0.94627 0.92821 0.93755 0.96900 0.97026 0.93285 0.90997 0.90815 0.90870 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.84 37.16 0.37 -0.77 16 2 C 0.05 0.43 5.68 -3.83 -0.02 0.41 16 3 N -0.54 -5.50 4.66 -234.67 -1.09 -6.59 16 4 C 0.06 0.63 5.29 -3.83 -0.02 0.61 16 5 C -0.15 -1.83 4.80 -26.65 -0.13 -1.96 16 6 C 0.08 1.08 2.20 -67.59 -0.15 0.93 16 7 N -0.53 -7.74 3.77 -234.74 -0.88 -8.62 16 8 C 0.00 -0.01 8.06 60.06 0.48 0.47 16 9 C 0.07 1.16 3.18 -3.82 -0.01 1.15 16 10 C -0.05 -1.03 0.60 -154.51 -0.09 -1.12 16 11 C -0.13 -2.50 6.67 37.15 0.25 -2.25 16 12 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 13 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 14 C -0.50 -13.88 7.53 -34.44 -0.26 -14.14 16 15 H 0.06 1.61 5.72 -52.49 -0.30 1.31 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.11 -1.18 5.23 -26.65 -0.14 -1.32 16 23 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 28 H 0.07 0.56 7.99 -51.93 -0.41 0.14 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.75 6.21 -51.93 -0.32 0.42 16 31 H 0.07 0.95 6.13 -51.93 -0.32 0.64 16 32 H 0.07 0.88 7.39 -51.93 -0.38 0.50 16 33 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.06 0.74 6.63 -51.93 -0.34 0.39 16 35 H 0.09 1.30 3.89 -51.93 -0.20 1.10 16 36 H 0.02 0.32 5.90 -51.93 -0.31 0.01 16 37 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 38 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 39 H 0.05 0.79 6.20 -51.93 -0.32 0.46 16 40 H 0.06 1.30 6.38 -51.93 -0.33 0.97 16 41 H 0.04 0.68 7.49 -51.92 -0.39 0.30 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 44 H 0.04 0.79 7.62 -51.93 -0.40 0.40 16 45 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.07 0.83 6.46 -51.93 -0.34 0.49 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 51 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -28.94 364.67 -10.03 -38.97 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -9.61 Total: -2.41 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 0.34 Total: -17.26 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -1.24 Total: -41.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.94 -10.03 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125294158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.246 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds