Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47537 * 2 1 4 4 C 1.46900 * 111.00179 * 88.34317 * 3 2 1 5 5 C 1.52995 * 109.47696 * 287.00501 * 4 3 2 6 6 C 1.46898 * 111.00167 * 212.30336 * 3 2 1 7 7 H 1.08998 * 110.90240 * 44.94054 * 6 3 2 8 8 C 1.55137 * 110.98916 * 281.07091 * 6 3 2 9 9 C 1.54319 * 103.01957 * 206.25472 * 8 6 3 10 10 N 1.47443 * 107.23332 * 22.28349 * 9 8 6 11 11 C 1.46897 * 110.99654 * 123.25761 * 10 9 8 12 12 C 1.52997 * 109.47327 * 75.79087 * 11 10 9 13 13 C 1.52996 * 109.47291 * 174.07548 * 12 11 10 14 14 C 1.53002 * 109.47199 * 294.07767 * 12 11 10 15 15 C 1.53000 * 109.46955 * 54.07749 * 12 11 10 16 16 C 1.50700 * 109.47389 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99909 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00131 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47104 * 120.00352 * 20 18 16 23 23 H 1.48495 * 109.47367 * 240.00272 * 20 18 16 24 24 C 1.47845 * 108.56350 * 0.99490 * 10 9 8 25 25 H 1.08997 * 109.47840 * 185.31540 * 1 2 3 26 26 H 1.09005 * 109.47439 * 305.31043 * 1 2 3 27 27 H 1.08996 * 109.47276 * 65.30915 * 1 2 3 28 28 H 1.08992 * 109.46942 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46520 * 120.00022 * 2 1 3 30 30 H 1.09001 * 109.47001 * 47.00812 * 4 3 2 31 31 H 1.09002 * 109.47279 * 167.00199 * 4 3 2 32 32 H 1.09001 * 109.47543 * 193.53588 * 5 4 3 33 33 H 1.09001 * 109.46854 * 313.53559 * 5 4 3 34 34 H 1.09005 * 109.47459 * 73.53282 * 5 4 3 35 35 H 1.09005 * 110.70376 * 87.87216 * 8 6 3 36 36 H 1.09001 * 110.70818 * 324.64231 * 8 6 3 37 37 H 1.09008 * 109.88633 * 262.88110 * 9 8 6 38 38 H 1.09000 * 110.02165 * 141.77281 * 9 8 6 39 39 H 1.09002 * 109.47335 * 195.79580 * 11 10 9 40 40 H 1.09000 * 109.47092 * 315.79043 * 11 10 9 41 41 H 1.08995 * 109.47228 * 63.85765 * 13 12 11 42 42 H 1.09000 * 109.47274 * 183.85589 * 13 12 11 43 43 H 1.08999 * 109.47153 * 303.85491 * 13 12 11 44 44 H 1.08999 * 109.46754 * 66.82856 * 14 12 11 45 45 H 1.08997 * 109.46784 * 186.82553 * 14 12 11 46 46 H 1.08994 * 109.46811 * 306.82742 * 14 12 11 47 47 H 1.09008 * 109.47094 * 300.00075 * 15 12 11 48 48 H 1.09007 * 109.47184 * 59.99754 * 15 12 11 49 49 H 0.96999 * 120.00465 * 180.02562 * 19 18 16 50 50 H 1.08998 * 110.37872 * 94.73454 * 24 10 9 51 51 H 1.09008 * 110.36796 * 217.07213 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.1579 1.8945 1.3708 5 6 0.7705 2.1613 1.9581 6 6 3.2881 1.4948 -0.7329 7 1 3.2430 0.9448 -1.6729 8 6 4.4769 1.0102 0.1381 9 6 5.6750 1.7889 -0.4447 10 7 5.1325 2.9766 -1.1295 11 6 5.7199 4.2099 -0.5892 12 6 7.1456 4.3711 -1.1205 13 6 7.7045 5.7251 -0.6786 14 6 8.0266 3.2500 -0.5657 15 6 7.1313 4.2996 -2.6488 16 6 8.5356 4.4578 -3.1723 17 1 9.3563 4.5952 -2.4838 18 6 8.7729 4.4261 -4.5300 19 7 7.7737 4.2584 -5.3685 20 14 10.5135 4.6230 -5.1789 21 1 11.4498 4.7969 -4.0395 22 1 10.8937 3.4129 -5.9513 23 1 10.5808 5.8151 -6.0618 24 6 3.6621 2.9783 -0.9752 25 1 -0.3635 -1.0232 0.0952 26 1 -0.3634 0.5940 0.8386 27 1 -0.3633 0.4293 -0.9337 28 1 1.8932 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.6755 1.1556 1.9827 31 1 2.7313 2.8214 1.3579 32 1 0.8686 2.7557 2.8665 33 1 0.1669 2.7051 1.2315 34 1 0.2876 1.2131 2.1948 35 1 4.6241 -0.0640 0.0259 36 1 4.3197 1.2715 1.1846 37 1 6.2126 1.1632 -1.1574 38 1 6.3455 2.0971 0.3574 39 1 5.1182 5.0646 -0.8980 40 1 5.7419 4.1553 0.4992 41 1 7.7787 5.7501 0.4085 42 1 8.6934 5.8694 -1.1137 43 1 7.0396 6.5202 -1.0158 44 1 7.7017 2.2948 -0.9782 45 1 9.0645 3.4319 -0.8443 46 1 7.9410 3.2247 0.5206 47 1 6.7331 3.3350 -2.9637 48 1 6.5036 5.0983 -3.0441 49 1 7.9406 4.2357 -6.3238 50 1 3.3710 3.5878 -0.1198 51 1 3.1857 3.3462 -1.8841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127415949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = 7.131279 kcal Electronic energy + Delta-G solvation = -24029.716767 eV Core-core repulsion = 20964.024982 eV Total energy + Delta-G solvation = -3065.691785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88504 -37.70911 -35.42467 -32.34707 -31.37835 -31.13611 -29.56989 -27.63409 -26.87828 -26.24942 -24.67892 -23.27700 -22.68111 -22.05022 -20.46590 -19.60553 -17.86789 -16.38221 -16.19590 -15.89617 -15.28397 -15.00430 -14.43882 -14.24663 -13.56901 -13.43228 -13.39079 -13.02353 -12.83149 -12.76047 -12.51924 -12.46146 -12.23504 -12.02755 -11.86680 -11.63366 -11.51070 -11.30934 -11.16834 -10.96246 -10.89470 -10.67635 -10.63292 -10.55890 -10.40047 -10.28472 -10.14122 -9.94422 -9.52989 -8.89517 -8.65404 -8.36765 -8.18592 -7.69673 -5.82677 -3.82146 3.38322 3.46166 3.49110 3.66343 4.45446 4.58149 4.73629 4.79975 4.81991 4.96020 5.12276 5.13698 5.28446 5.35200 5.35985 5.45981 5.52204 5.52777 5.59131 5.64068 5.68600 5.75605 5.80557 5.84303 5.86262 5.94250 6.03734 6.05303 6.14421 6.17350 6.20063 6.28451 6.33700 6.41094 6.46260 6.54913 6.79193 6.81201 6.99352 7.03745 7.14226 7.26282 7.40157 7.49333 7.67704 7.93251 8.14149 8.30761 8.64576 9.25893 9.79262 11.28374 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003695 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.982935 B = 7576.366918 C = 7996.983475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.047 3.953 5 C -0.151 4.151 6 C 0.077 3.923 7 H 0.097 0.903 8 C -0.180 4.180 9 C 0.045 3.955 10 N -0.510 5.510 11 C 0.067 3.933 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.132 4.132 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.053 3.947 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.034 0.966 48 H 0.008 0.992 49 H 0.256 0.744 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 -6.933 14.583 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.076 4.076 3 N -0.251 5.251 4 C -0.081 4.081 5 C -0.208 4.208 6 C -0.033 4.033 7 H 0.115 0.885 8 C -0.220 4.220 9 C -0.083 4.083 10 N -0.234 5.234 11 C -0.061 4.061 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.188 4.188 15 C 0.010 3.990 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.710 3.290 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.053 0.947 48 H 0.026 0.974 49 H 0.066 0.934 50 H 0.062 0.938 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.764 -6.665 13.630 19.827 hybrid contribution 1.443 -0.335 0.763 1.667 sum -11.321 -7.000 14.393 19.604 Atomic orbital electron populations 1.22037 0.95123 1.01029 1.03123 1.22104 0.96212 0.88541 1.00737 1.62060 1.27829 1.20472 1.14704 1.22211 0.97475 0.99918 0.88495 1.21981 0.97020 1.01455 1.00338 1.22994 0.86215 0.97286 0.96767 0.88505 1.23567 0.97608 1.00780 1.00047 1.23057 0.95716 0.92342 0.97211 1.63522 1.03032 1.02097 1.54759 1.22405 0.97417 0.91474 0.94762 1.20603 0.90880 0.93858 1.00533 1.21761 1.02208 0.96939 0.97727 1.22024 1.00761 0.99503 0.96554 1.18989 0.95798 0.98041 0.86199 1.21406 0.93931 1.48074 0.91257 0.92778 1.24982 0.96135 0.96028 0.97339 1.69993 1.30211 1.51079 1.02139 0.86715 0.85886 0.77492 0.78935 1.19985 1.21295 1.21312 1.23031 0.88857 0.94725 1.00889 0.93016 0.91535 0.92185 0.91354 0.94517 0.94647 0.90746 0.92728 0.91504 0.92492 0.91396 0.91413 0.90375 0.91992 0.91744 0.96370 0.95463 0.91459 0.93821 0.92209 0.92543 0.95883 0.94720 0.97398 0.93442 0.93845 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.96 37.16 0.37 -0.94 16 2 C 0.05 0.50 5.56 -3.83 -0.02 0.48 16 3 N -0.53 -5.81 4.38 -224.11 -0.98 -6.80 16 4 C 0.05 0.47 4.16 -3.83 -0.02 0.46 16 5 C -0.15 -1.28 8.61 37.16 0.32 -0.96 16 6 C 0.08 0.97 3.02 -65.58 -0.20 0.77 16 7 H 0.10 1.30 7.71 -51.93 -0.40 0.90 16 8 C -0.18 -2.21 6.06 -24.91 -0.15 -2.36 16 9 C 0.04 0.68 4.85 -2.83 -0.01 0.66 16 10 N -0.51 -8.73 4.10 -231.25 -0.95 -9.68 16 11 C 0.07 1.19 3.89 -3.83 -0.01 1.17 16 12 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 13 C -0.13 -2.47 8.29 37.16 0.31 -2.16 16 14 C -0.13 -2.50 6.57 37.16 0.24 -2.26 16 15 C 0.05 1.20 3.82 -27.88 -0.11 1.09 16 16 C -0.51 -14.14 7.67 -34.44 -0.26 -14.40 16 17 H 0.05 1.47 5.71 -52.49 -0.30 1.17 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 20 Si 0.88 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.05 0.78 6.15 -2.30 -0.01 0.77 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.54 4.60 -51.93 -0.24 0.30 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 29 H 0.04 0.34 7.53 -51.93 -0.39 -0.05 16 30 H 0.04 0.35 6.53 -51.93 -0.34 0.01 16 31 H 0.07 0.82 6.00 -51.93 -0.31 0.51 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.06 0.44 6.13 -51.93 -0.32 0.13 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.79 5.69 -51.93 -0.30 0.50 16 37 H 0.08 1.29 7.38 -51.92 -0.38 0.90 16 38 H 0.06 0.93 5.25 -51.93 -0.27 0.66 16 39 H 0.06 1.15 7.99 -51.93 -0.41 0.74 16 40 H 0.02 0.30 7.76 -51.93 -0.40 -0.11 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.40 6.50 -51.93 -0.34 1.06 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.15 5.30 -51.93 -0.28 0.87 16 45 H 0.06 1.15 6.85 -51.93 -0.36 0.80 16 46 H 0.02 0.37 7.49 -51.93 -0.39 -0.01 16 47 H 0.03 0.97 7.45 -51.92 -0.39 0.58 16 48 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.04 0.61 5.84 -51.93 -0.30 0.31 16 51 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -29.53 364.05 -9.92 -39.45 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -9.44 Total: -1.41 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 0.25 Total: -17.45 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -1.19 Total: -43.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.53 -9.92 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.580 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds