Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47537 * 2 1 4 4 C 1.46900 * 111.00179 * 88.34317 * 3 2 1 5 5 C 1.52995 * 109.47696 * 287.00501 * 4 3 2 6 6 C 1.46898 * 111.00167 * 212.30336 * 3 2 1 7 7 H 1.08998 * 110.90240 * 44.94054 * 6 3 2 8 8 C 1.55137 * 110.98916 * 281.07091 * 6 3 2 9 9 C 1.54319 * 103.01957 * 206.25472 * 8 6 3 10 10 N 1.47443 * 107.23332 * 22.28349 * 9 8 6 11 11 C 1.46897 * 110.99654 * 123.25761 * 10 9 8 12 12 C 1.52997 * 109.47327 * 75.79087 * 11 10 9 13 13 C 1.52996 * 109.47291 * 174.07548 * 12 11 10 14 14 C 1.53002 * 109.47199 * 294.07767 * 12 11 10 15 15 C 1.53000 * 109.46955 * 54.07749 * 12 11 10 16 16 C 1.50700 * 109.47389 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99909 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00131 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47104 * 120.00352 * 20 18 16 23 23 H 1.48495 * 109.47367 * 240.00272 * 20 18 16 24 24 C 1.47845 * 108.56350 * 0.99490 * 10 9 8 25 25 H 1.08997 * 109.47840 * 185.31540 * 1 2 3 26 26 H 1.09005 * 109.47439 * 305.31043 * 1 2 3 27 27 H 1.08996 * 109.47276 * 65.30915 * 1 2 3 28 28 H 1.08992 * 109.46942 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46520 * 120.00022 * 2 1 3 30 30 H 1.09001 * 109.47001 * 47.00812 * 4 3 2 31 31 H 1.09002 * 109.47279 * 167.00199 * 4 3 2 32 32 H 1.09001 * 109.47543 * 193.53588 * 5 4 3 33 33 H 1.09001 * 109.46854 * 313.53559 * 5 4 3 34 34 H 1.09005 * 109.47459 * 73.53282 * 5 4 3 35 35 H 1.09005 * 110.70376 * 87.87216 * 8 6 3 36 36 H 1.09001 * 110.70818 * 324.64231 * 8 6 3 37 37 H 1.09008 * 109.88633 * 262.88110 * 9 8 6 38 38 H 1.09000 * 110.02165 * 141.77281 * 9 8 6 39 39 H 1.09002 * 109.47335 * 195.79580 * 11 10 9 40 40 H 1.09000 * 109.47092 * 315.79043 * 11 10 9 41 41 H 1.08995 * 109.47228 * 63.85765 * 13 12 11 42 42 H 1.09000 * 109.47274 * 183.85589 * 13 12 11 43 43 H 1.08999 * 109.47153 * 303.85491 * 13 12 11 44 44 H 1.08999 * 109.46754 * 66.82856 * 14 12 11 45 45 H 1.08997 * 109.46784 * 186.82553 * 14 12 11 46 46 H 1.08994 * 109.46811 * 306.82742 * 14 12 11 47 47 H 1.09008 * 109.47094 * 300.00075 * 15 12 11 48 48 H 1.09007 * 109.47184 * 59.99754 * 15 12 11 49 49 H 0.96999 * 120.00465 * 180.02562 * 19 18 16 50 50 H 1.08998 * 110.37872 * 94.73454 * 24 10 9 51 51 H 1.09008 * 110.36796 * 217.07213 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.1579 1.8945 1.3708 5 6 0.7705 2.1613 1.9581 6 6 3.2881 1.4948 -0.7329 7 1 3.2430 0.9448 -1.6729 8 6 4.4769 1.0102 0.1381 9 6 5.6750 1.7889 -0.4447 10 7 5.1325 2.9766 -1.1295 11 6 5.7199 4.2099 -0.5892 12 6 7.1456 4.3711 -1.1205 13 6 7.7045 5.7251 -0.6786 14 6 8.0266 3.2500 -0.5657 15 6 7.1313 4.2996 -2.6488 16 6 8.5356 4.4578 -3.1723 17 1 9.3563 4.5952 -2.4838 18 6 8.7729 4.4261 -4.5300 19 7 7.7737 4.2584 -5.3685 20 14 10.5135 4.6230 -5.1789 21 1 11.4498 4.7969 -4.0395 22 1 10.8937 3.4129 -5.9513 23 1 10.5808 5.8151 -6.0618 24 6 3.6621 2.9783 -0.9752 25 1 -0.3635 -1.0232 0.0952 26 1 -0.3634 0.5940 0.8386 27 1 -0.3633 0.4293 -0.9337 28 1 1.8932 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.6755 1.1556 1.9827 31 1 2.7313 2.8214 1.3579 32 1 0.8686 2.7557 2.8665 33 1 0.1669 2.7051 1.2315 34 1 0.2876 1.2131 2.1948 35 1 4.6241 -0.0640 0.0259 36 1 4.3197 1.2715 1.1846 37 1 6.2126 1.1632 -1.1574 38 1 6.3455 2.0971 0.3574 39 1 5.1182 5.0646 -0.8980 40 1 5.7419 4.1553 0.4992 41 1 7.7787 5.7501 0.4085 42 1 8.6934 5.8694 -1.1137 43 1 7.0396 6.5202 -1.0158 44 1 7.7017 2.2948 -0.9782 45 1 9.0645 3.4319 -0.8443 46 1 7.9410 3.2247 0.5206 47 1 6.7331 3.3350 -2.9637 48 1 6.5036 5.0983 -3.0441 49 1 7.9406 4.2357 -6.3238 50 1 3.3710 3.5878 -0.1198 51 1 3.1857 3.3462 -1.8841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127415949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -10.443672 kcal Electronic energy + Delta-G solvation = -24030.478874 eV Core-core repulsion = 20964.024982 eV Total energy + Delta-G solvation = -3066.453892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01466 -38.96097 -36.79399 -34.41831 -32.29654 -32.08832 -30.67659 -29.22594 -28.49230 -27.69415 -26.07848 -24.69527 -24.03428 -22.92321 -21.70098 -20.58305 -19.49413 -18.26417 -17.41320 -17.09581 -16.46431 -16.19047 -15.89126 -15.45427 -15.14337 -14.86701 -14.55986 -14.14838 -14.05747 -13.84446 -13.77502 -13.60305 -13.47456 -13.34426 -13.15251 -12.88785 -12.69343 -12.61655 -12.58521 -12.31564 -12.21004 -12.15860 -12.12558 -12.07159 -11.71781 -11.65975 -11.45786 -11.21122 -11.15380 -10.73831 -10.62779 -10.42148 -9.23169 -8.99921 -8.05784 -6.12352 1.40398 1.41198 1.52941 2.47352 2.74111 3.27087 3.28007 3.69098 3.75922 3.97862 4.09314 4.16792 4.17348 4.27052 4.32611 4.41290 4.45576 4.52552 4.57873 4.60191 4.63822 4.68182 4.77710 4.80711 4.87031 4.88976 4.93547 4.96842 5.00197 5.01433 5.06662 5.13524 5.17735 5.19764 5.22708 5.26017 5.37916 5.53895 5.54640 5.59406 5.63571 5.77388 6.01286 6.08094 6.12567 6.21398 6.27222 6.34935 6.46812 7.06679 7.53832 9.06015 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003695 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.982935 B = 7576.366918 C = 7996.983475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 N -0.534 5.534 4 C 0.046 3.954 5 C -0.145 4.145 6 C 0.085 3.915 7 H 0.084 0.916 8 C -0.165 4.165 9 C 0.047 3.953 10 N -0.541 5.541 11 C 0.076 3.924 12 C -0.058 4.058 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.062 3.938 16 C -0.514 4.514 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.950 3.050 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.057 3.943 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.056 0.944 47 H 0.003 0.997 48 H -0.031 1.031 49 H 0.257 0.743 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 -7.532 17.053 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 N -0.257 5.257 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.025 4.025 7 H 0.102 0.898 8 C -0.205 4.205 9 C -0.081 4.081 10 N -0.265 5.265 11 C -0.052 4.052 12 C -0.059 4.059 13 C -0.182 4.182 14 C -0.180 4.180 15 C 0.024 3.976 16 C -0.553 4.553 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.777 3.223 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.071 4.071 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.021 0.979 48 H -0.013 1.013 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.575 -7.267 16.120 21.698 hybrid contribution 1.337 -0.149 -0.021 1.345 sum -11.238 -7.416 16.098 20.987 Atomic orbital electron populations 1.22002 0.94164 1.01967 1.02733 1.22160 0.96949 0.87635 1.00929 1.62075 1.26628 1.21618 1.15390 1.22252 0.98438 0.99525 0.87915 1.21934 0.95888 1.02025 1.00404 1.22789 0.87431 0.95485 0.96773 0.89817 1.23458 0.95746 1.00948 1.00338 1.22969 0.96792 0.91658 0.96693 1.63366 1.04496 1.02566 1.56084 1.22221 0.95377 0.91602 0.95970 1.20527 0.93379 0.95315 0.96652 1.21689 1.00732 0.95939 0.99832 1.21928 0.99103 0.98441 0.98571 1.18744 0.93868 0.94618 0.90320 1.21794 0.95011 1.46917 0.91555 0.92141 1.25870 1.00371 0.95942 0.97874 1.70146 1.32650 1.52532 1.02406 0.85615 0.80880 0.77382 0.78467 1.18610 1.20959 1.20994 1.22939 0.87398 0.96470 1.00305 0.91573 0.91084 0.93253 0.91834 0.93607 0.93965 0.91709 0.91598 0.92398 0.91572 0.90288 0.90032 0.92485 0.91395 0.92635 0.93777 0.91956 0.93441 0.94196 0.92929 0.94249 0.92478 0.97899 1.01288 0.93467 0.92794 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.96 71.98 0.72 -1.56 16 2 C 0.05 0.89 5.56 86.30 0.48 1.37 16 3 N -0.53 -11.05 4.38 -862.96 -3.78 -14.83 16 4 C 0.05 0.83 4.16 86.30 0.36 1.19 16 5 C -0.15 -2.13 8.61 71.98 0.62 -1.51 16 6 C 0.08 2.10 3.02 46.30 0.14 2.24 16 7 H 0.08 2.28 7.71 -2.39 -0.02 2.26 16 8 C -0.17 -3.77 6.06 31.77 0.19 -3.58 16 9 C 0.05 1.38 4.85 86.65 0.42 1.80 16 10 N -0.54 -18.65 4.10 -885.53 -3.63 -22.28 16 11 C 0.08 2.64 3.89 86.30 0.34 2.98 16 12 C -0.06 -2.35 0.61 -52.18 -0.03 -2.38 16 13 C -0.12 -4.63 8.29 71.98 0.60 -4.03 16 14 C -0.12 -4.55 6.57 71.98 0.47 -4.08 16 15 C 0.06 3.28 3.82 29.85 0.11 3.40 16 16 C -0.51 -29.20 7.67 25.60 0.20 -29.00 16 17 H 0.06 3.30 5.71 -2.91 -0.02 3.28 16 18 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 19 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 20 Si 0.95 45.60 29.54 68.60 2.03 47.62 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.06 1.68 6.15 86.77 0.53 2.21 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 1.00 4.60 -2.38 -0.01 0.99 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.17 7.48 -2.39 -0.02 1.15 16 29 H 0.05 0.73 7.53 -2.39 -0.02 0.71 16 30 H 0.04 0.71 6.53 -2.39 -0.02 0.69 16 31 H 0.06 1.29 6.00 -2.39 -0.01 1.28 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 34 H 0.07 0.85 6.13 -2.38 -0.01 0.84 16 35 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.67 5.69 -2.39 -0.01 1.66 16 37 H 0.06 1.90 7.38 -2.38 -0.02 1.89 16 38 H 0.07 1.90 5.25 -2.39 -0.01 1.88 16 39 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 40 H 0.04 1.31 7.76 -2.39 -0.02 1.29 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.93 6.50 -2.39 -0.02 1.92 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 2.00 5.30 -2.39 -0.01 1.99 16 45 H 0.04 1.56 6.85 -2.39 -0.02 1.54 16 46 H 0.06 1.71 7.49 -2.39 -0.02 1.69 16 47 H 0.00 0.15 7.45 -2.38 -0.02 0.14 16 48 H -0.03 -1.89 8.14 -2.38 -0.02 -1.91 16 49 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.05 1.47 5.84 -2.39 -0.01 1.46 16 51 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -65.24 364.05 1.38 -63.86 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.87 Total: 14.99 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 5.61 Total: -30.74 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -7.13 Total: -95.73 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -65.24 1.38 -63.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127415949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.415 kcal (2) G-P(sol) polarization free energy of solvation -65.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds