Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47106 * 2 1 4 4 C 1.46897 * 111.00059 * 66.04952 * 3 2 1 5 5 C 1.52994 * 109.47401 * 65.11217 * 4 3 2 6 6 C 1.46908 * 111.00239 * 190.00062 * 3 2 1 7 7 H 1.08998 * 110.76238 * 302.58634 * 6 3 2 8 8 C 1.55143 * 110.70400 * 65.78264 * 6 3 2 9 9 C 1.54904 * 101.68763 * 154.01907 * 8 6 3 10 10 N 1.47886 * 104.77435 * 322.98520 * 9 8 6 11 11 C 1.46901 * 111.01989 * 146.33136 * 10 9 8 12 12 C 1.52994 * 109.47209 * 76.16400 * 11 10 9 13 13 C 1.53003 * 109.47352 * 174.30714 * 12 11 10 14 14 C 1.53003 * 109.47244 * 294.30810 * 12 11 10 15 15 C 1.53002 * 109.47370 * 54.30612 * 12 11 10 16 16 C 1.50694 * 109.47046 * 180.02562 * 15 12 11 17 17 H 1.08004 * 120.00408 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99914 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99983 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00091 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47077 * 90.00049 * 20 18 16 22 22 H 1.48493 * 109.47514 * 210.00358 * 20 18 16 23 23 H 1.48506 * 109.47006 * 330.00170 * 20 18 16 24 24 C 1.47447 * 108.58784 * 24.03253 * 10 9 8 25 25 H 1.08997 * 109.46677 * 299.99963 * 1 2 3 26 26 H 1.09005 * 109.46980 * 59.99880 * 1 2 3 27 27 H 1.08996 * 109.46951 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47415 * 240.00003 * 2 1 3 29 29 H 1.08997 * 109.47582 * 119.99920 * 2 1 3 30 30 H 1.08999 * 109.47484 * 185.11938 * 4 3 2 31 31 H 1.09010 * 109.46782 * 305.11041 * 4 3 2 32 32 H 1.09005 * 109.47202 * 305.39001 * 5 4 3 33 33 H 1.09001 * 109.47034 * 65.39474 * 5 4 3 34 34 H 1.08997 * 109.47015 * 185.38953 * 5 4 3 35 35 H 1.08999 * 110.98735 * 272.13027 * 8 6 3 36 36 H 1.09000 * 110.99281 * 35.90745 * 8 6 3 37 37 H 1.09010 * 110.37179 * 81.77450 * 9 8 6 38 38 H 1.08992 * 110.37261 * 204.11541 * 9 8 6 39 39 H 1.09001 * 109.47163 * 196.16344 * 11 10 9 40 40 H 1.08995 * 109.46680 * 316.16315 * 11 10 9 41 41 H 1.09002 * 109.46793 * 54.24220 * 13 12 11 42 42 H 1.08998 * 109.47171 * 174.24436 * 13 12 11 43 43 H 1.08997 * 109.46581 * 294.25150 * 13 12 11 44 44 H 1.08999 * 109.47139 * 76.29946 * 14 12 11 45 45 H 1.09000 * 109.47294 * 196.30725 * 14 12 11 46 46 H 1.09002 * 109.46857 * 316.30538 * 14 12 11 47 47 H 1.09003 * 109.46941 * 299.99687 * 15 12 11 48 48 H 1.08998 * 109.46836 * 60.00295 * 15 12 11 49 49 H 0.97003 * 119.99596 * 179.97438 * 19 18 16 50 50 H 1.08999 * 109.88524 * 239.63868 * 24 10 9 51 51 H 1.09006 * 109.88423 * 118.45449 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 2.4042 1.4002 2.4185 6 6 3.4686 1.4312 -0.2382 7 1 4.0021 0.8459 0.5107 8 6 3.8057 0.9311 -1.6676 9 6 5.1419 1.6624 -1.9489 10 7 4.9838 2.9918 -1.3207 11 6 6.2638 3.4794 -0.7897 12 6 7.1392 3.9738 -1.9429 13 6 8.4115 4.6109 -1.3806 14 6 7.5141 2.7932 -2.8411 15 6 6.3675 5.0116 -2.7605 16 6 7.2296 5.4981 -3.8967 17 1 8.2279 5.1059 -4.0234 18 6 6.7439 6.4438 -4.7746 19 7 7.4961 6.8680 -5.7666 20 14 5.0169 7.1216 -4.5560 21 1 5.0626 8.3195 -3.6795 22 1 4.4616 7.4983 -5.8806 23 1 4.1537 6.0857 -3.9338 24 6 3.9730 2.8895 -0.2521 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.9637 3.1148 1.1909 31 1 0.5944 2.0001 1.4156 32 1 2.1851 0.3324 2.4226 33 1 3.4779 1.5504 2.3052 34 1 2.0726 1.8429 3.3577 35 1 3.9421 -0.1503 -1.6808 36 1 3.0373 1.2343 -2.3787 37 1 5.9727 1.1239 -1.4926 38 1 5.2994 1.7655 -3.0225 39 1 6.0804 4.2993 -0.0954 40 1 6.7731 2.6689 -0.2685 41 1 8.9085 3.9043 -0.7159 42 1 9.0809 4.8706 -2.2008 43 1 8.1515 5.5116 -0.8246 44 1 6.6596 2.5232 -3.4617 45 1 8.3523 3.0737 -3.4789 46 1 7.7973 1.9416 -2.2225 47 1 5.4611 4.5576 -3.1611 48 1 6.1005 5.8527 -2.1206 49 1 7.1542 7.5331 -6.3844 50 1 3.1444 3.5666 -0.4595 51 1 4.4238 3.1351 0.7095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127416166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = 3.712394 kcal Electronic energy + Delta-G solvation = -24160.500077 eV Core-core repulsion = 21094.660038 eV Total energy + Delta-G solvation = -3065.840039 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87198 -37.90447 -35.59780 -32.26864 -31.74651 -30.98993 -29.27348 -27.85268 -27.25600 -26.27562 -25.05354 -23.91791 -22.24087 -21.59619 -20.58376 -19.34878 -17.91892 -16.86715 -16.52898 -15.91877 -15.46924 -14.85256 -14.34075 -14.23156 -13.90159 -13.69154 -13.34902 -13.31578 -12.81049 -12.77136 -12.53584 -12.42885 -12.21947 -12.04044 -12.02278 -11.90852 -11.61850 -11.44957 -11.09820 -11.08160 -10.94446 -10.83419 -10.77498 -10.66354 -10.60273 -10.28246 -10.01934 -9.67151 -9.50716 -9.14722 -8.73053 -8.44008 -8.35486 -7.83745 -5.87146 -3.81693 3.44777 3.52107 3.62608 3.68744 4.30098 4.51866 4.63260 4.69462 4.90038 4.95407 5.00958 5.04393 5.09120 5.21751 5.32237 5.36048 5.43591 5.47419 5.47902 5.56373 5.65331 5.70681 5.76683 5.78337 5.81621 5.86591 5.88756 5.93335 6.03867 6.06317 6.12456 6.22164 6.25771 6.32423 6.39879 6.46206 6.75419 6.81216 6.94099 7.01807 7.07838 7.20132 7.25474 7.36822 7.52631 7.57789 7.82095 8.02883 8.74029 9.19694 9.78000 11.26305 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.004353 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.184631 B = 6430.558773 C = 6943.122108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.523 5.523 4 C 0.043 3.957 5 C -0.192 4.192 6 C 0.062 3.938 7 H 0.046 0.954 8 C -0.123 4.123 9 C 0.044 3.956 10 N -0.513 5.513 11 C 0.063 3.937 12 C -0.048 4.048 13 C -0.127 4.127 14 C -0.128 4.128 15 C 0.008 3.992 16 C -0.506 4.506 17 H 0.072 0.928 18 C 0.063 3.937 19 N -0.912 5.912 20 Si 0.873 3.127 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.259 1.259 24 C 0.052 3.948 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.025 0.975 47 H 0.034 0.966 48 H 0.002 0.998 49 H 0.259 0.741 50 H 0.084 0.916 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -14.588 15.154 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.247 5.247 4 C -0.085 4.085 5 C -0.251 4.251 6 C -0.048 4.048 7 H 0.064 0.936 8 C -0.161 4.161 9 C -0.084 4.084 10 N -0.236 5.236 11 C -0.065 4.065 12 C -0.048 4.048 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.029 4.029 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.552 5.552 20 Si 0.701 3.299 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.183 1.183 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.021 0.979 49 H 0.069 0.931 50 H 0.102 0.898 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.162 -13.856 14.250 22.795 hybrid contribution -0.137 -0.478 1.409 1.494 sum -11.299 -14.334 15.659 24.048 Atomic orbital electron populations 1.21793 0.94972 1.01294 1.02504 1.22116 0.95969 0.89385 1.00772 1.62336 1.13056 1.15606 1.33701 1.22240 1.00234 0.98949 0.87028 1.22424 1.01438 1.01349 0.99857 1.22894 0.87536 0.97359 0.96966 0.93642 1.22828 0.98404 0.98945 0.95922 1.23335 0.95332 0.88197 1.01543 1.63527 1.08029 1.24671 1.27406 1.22525 0.89255 0.97870 0.96873 1.20392 0.94153 0.96458 0.93819 1.21748 0.97627 0.98781 1.00318 1.21984 1.01922 0.95772 0.98861 1.19516 0.96146 0.92741 0.94518 1.21282 1.01683 1.21907 1.09584 0.90975 1.24997 0.97057 0.96443 0.95128 1.69930 1.36907 1.31794 1.16573 0.86865 0.86282 0.79764 0.77011 1.20805 1.21923 1.18302 1.22890 0.96150 0.95088 0.93479 0.92775 0.91741 0.92562 0.90705 0.94844 0.90257 0.90524 0.92599 0.92557 0.92168 0.91710 0.89628 0.93885 0.88956 0.91776 0.95902 0.95284 0.91393 0.93626 0.92111 0.92534 0.95610 0.94796 0.97943 0.93134 0.89765 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.85 37.16 0.37 -0.81 16 2 C 0.05 0.41 5.41 -3.82 -0.02 0.39 16 3 N -0.52 -5.59 4.54 -224.47 -1.02 -6.61 16 4 C 0.04 0.41 5.55 -3.83 -0.02 0.39 16 5 C -0.19 -1.62 9.20 37.15 0.34 -1.28 16 6 C 0.06 0.72 1.97 -65.89 -0.13 0.59 16 7 H 0.05 0.53 6.86 -51.93 -0.36 0.17 16 8 C -0.12 -1.49 5.62 -24.59 -0.14 -1.63 16 9 C 0.04 0.63 4.95 -2.28 -0.01 0.62 16 10 N -0.51 -8.33 4.10 -231.22 -0.95 -9.28 16 11 C 0.06 1.05 3.86 -3.83 -0.01 1.03 16 12 C -0.05 -0.94 0.61 -154.51 -0.09 -1.03 16 13 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 14 C -0.13 -2.41 6.67 37.16 0.25 -2.16 16 15 C 0.01 0.20 2.82 -27.88 -0.08 0.12 16 16 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 17 H 0.07 2.17 6.08 -52.48 -0.32 1.85 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 20 Si 0.87 22.59 27.47 -169.99 -4.67 17.92 16 21 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 24 C 0.05 0.72 5.39 -2.84 -0.02 0.70 16 25 H 0.05 0.41 6.45 -51.93 -0.33 0.08 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.69 6.89 -51.93 -0.36 0.33 16 29 H 0.03 0.29 6.08 -51.93 -0.32 -0.02 16 30 H 0.08 0.80 6.72 -51.93 -0.35 0.45 16 31 H 0.08 0.66 6.25 -51.92 -0.32 0.33 16 32 H 0.06 0.46 6.18 -51.93 -0.32 0.14 16 33 H 0.06 0.53 6.85 -51.93 -0.36 0.17 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.68 7.88 -51.93 -0.41 0.27 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.59 6.71 -51.92 -0.35 0.24 16 38 H 0.09 1.46 5.96 -51.93 -0.31 1.15 16 39 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 40 H 0.02 0.35 7.55 -51.93 -0.39 -0.04 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.42 6.72 -51.93 -0.35 1.07 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.16 5.39 -51.93 -0.28 0.88 16 45 H 0.06 1.16 7.06 -51.93 -0.37 0.79 16 46 H 0.02 0.41 7.23 -51.93 -0.38 0.03 16 47 H 0.03 0.85 6.51 -51.93 -0.34 0.52 16 48 H 0.00 0.06 7.57 -51.93 -0.39 -0.34 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.08 1.25 7.34 -51.93 -0.38 0.87 16 51 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -30.49 361.39 -9.54 -40.04 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -9.47 Total: -1.69 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 0.35 Total: -17.98 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.19 Total: -43.74 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.49 -9.54 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127416166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.750 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds