Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47447 * 2 1 4 4 C 1.46501 * 120.00179 * 273.68527 * 3 2 1 5 5 C 1.50696 * 109.46928 * 269.99911 * 4 3 2 6 6 H 1.08002 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00280 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99569 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46953 * 60.00029 * 9 7 5 11 11 H 1.48498 * 109.47093 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47200 * 300.00104 * 9 7 5 13 13 C 1.34781 * 119.99892 * 93.68332 * 3 2 1 14 14 O 1.21282 * 120.00210 * 184.45270 * 13 3 2 15 15 C 1.50700 * 119.99757 * 4.45020 * 13 3 2 16 16 H 1.09001 * 109.47586 * 330.61712 * 15 13 3 17 17 C 1.53002 * 109.46910 * 90.62505 * 15 13 3 18 18 N 1.46902 * 109.46960 * 210.61979 * 15 13 3 19 19 C 1.48533 * 110.99967 * 72.75456 * 18 15 13 20 20 H 1.08994 * 110.66590 * 41.28729 * 19 18 15 21 21 C 1.52997 * 110.66930 * 278.15584 * 19 18 15 22 22 C 1.54939 * 103.22570 * 159.72275 * 19 18 15 23 23 C 1.54596 * 102.92017 * 322.58530 * 22 19 18 24 24 C 1.47904 * 111.00123 * 190.15429 * 18 15 13 25 25 H 1.08998 * 109.91603 * 333.50622 * 24 18 15 26 26 C 1.52998 * 109.91643 * 94.80334 * 24 18 15 27 27 H 1.08997 * 109.46438 * 59.99932 * 1 2 3 28 28 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47313 * 300.00182 * 1 2 3 30 30 H 1.08999 * 109.47313 * 239.99818 * 2 1 3 31 31 H 1.09001 * 109.46781 * 120.00425 * 2 1 3 32 32 H 1.09000 * 109.47021 * 29.99635 * 4 3 2 33 33 H 1.08994 * 109.47064 * 149.99754 * 4 3 2 34 34 H 0.97002 * 120.00000 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46778 * 303.53800 * 17 15 13 36 36 H 1.08997 * 109.47283 * 63.54391 * 17 15 13 37 37 H 1.09001 * 109.46757 * 183.54534 * 17 15 13 38 38 H 1.09004 * 109.47017 * 67.64008 * 21 19 18 39 39 H 1.09004 * 109.47163 * 187.64105 * 21 19 18 40 40 H 1.09006 * 109.47332 * 307.64002 * 21 19 18 41 41 H 1.09000 * 110.71996 * 204.23125 * 22 19 18 42 42 H 1.08997 * 110.72807 * 80.94688 * 22 19 18 43 43 H 1.09000 * 110.30799 * 263.04271 * 23 22 19 44 44 H 1.09007 * 110.30894 * 140.87647 * 23 22 19 45 45 H 1.09001 * 109.47456 * 64.48934 * 26 24 18 46 46 H 1.08997 * 109.46554 * 184.48833 * 26 24 18 47 47 H 1.08997 * 109.47122 * 304.48247 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1858 2.0990 -1.2661 5 6 3.5799 1.8724 -1.7915 6 1 4.2722 1.2557 -1.2375 7 6 3.9717 2.4523 -2.9794 8 7 3.1288 3.2036 -3.6538 9 14 5.7000 2.1720 -3.6303 10 1 5.9161 0.7196 -3.8517 11 1 5.8692 2.8985 -4.9144 12 1 6.6885 2.6746 -2.6426 13 6 2.3138 1.9915 1.1648 14 8 2.6406 3.1594 1.1717 15 6 2.2379 1.2226 2.4587 16 1 1.4839 0.4401 2.3728 17 6 3.5986 0.5894 2.7562 18 7 1.8736 2.1358 3.5503 19 6 0.4454 2.5330 3.4577 20 1 -0.1749 1.6782 3.1886 21 6 0.2655 3.6709 2.4510 22 6 0.1180 3.0159 4.8931 23 6 0.9165 2.0324 5.7792 24 6 2.0244 1.4764 4.8656 25 1 1.9089 0.3982 4.7558 26 6 3.3982 1.7998 5.4563 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.4600 1.7308 -1.9912 33 1 2.0277 3.1650 -1.1030 34 1 3.4043 3.6113 -4.4897 35 1 3.8978 -0.0393 1.9177 36 1 4.3401 1.3745 2.9045 37 1 3.5271 -0.0180 3.6585 38 1 0.4755 3.3038 1.4463 39 1 -0.7600 4.0378 2.4968 40 1 0.9526 4.4819 2.6926 41 1 -0.9504 2.9348 5.0929 42 1 0.4633 4.0387 5.0441 43 1 0.2708 1.2252 6.1251 44 1 1.3543 2.5579 6.6280 45 1 3.4653 2.8693 5.6560 46 1 3.5330 1.2474 6.3862 47 1 4.1751 1.5130 4.7475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133422094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = -31.029501 kcal Electronic energy + Delta-G solvation = -24472.627258 eV Core-core repulsion = 21269.447602 eV Total energy + Delta-G solvation = -3203.179655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17896 -38.23805 -35.16813 -33.64830 -32.74093 -32.33780 -30.03435 -28.88297 -28.10294 -27.07900 -24.13059 -23.75124 -22.97508 -21.88122 -20.31622 -19.77304 -18.28976 -16.56204 -16.43248 -16.30817 -15.21828 -14.98284 -14.59115 -14.30534 -14.07239 -13.46217 -13.36114 -13.15123 -13.04899 -12.78179 -12.36044 -12.27159 -12.09896 -11.95041 -11.84169 -11.69919 -11.55157 -11.32055 -11.29064 -11.13706 -10.90869 -10.77738 -10.69606 -10.55016 -10.52915 -10.46325 -10.26817 -10.08712 -9.58685 -8.73493 -8.39612 -8.13026 -7.55241 -6.00525 -4.05135 3.33698 3.38237 3.40684 3.50361 3.74734 4.22086 4.47870 4.57719 4.71098 4.92602 5.08781 5.15941 5.26370 5.32440 5.33662 5.39319 5.42869 5.45060 5.60655 5.66598 5.68532 5.73193 5.74543 5.84110 5.84899 5.89560 5.92862 5.98509 6.06734 6.14754 6.18801 6.26112 6.30982 6.41288 6.45401 6.51136 6.76806 7.05242 7.14307 7.25984 7.51519 7.63966 7.97028 8.28667 8.53088 8.95482 9.24405 9.60185 11.07347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.005011 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.188900 B = 5586.105245 C = 5863.945676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.516 3.484 14 O -0.516 6.516 15 C 0.055 3.945 16 H 0.055 0.945 17 C -0.143 4.143 18 N -0.485 5.485 19 C 0.064 3.936 20 H 0.046 0.954 21 C -0.135 4.135 22 C -0.117 4.117 23 C -0.127 4.127 24 C 0.064 3.936 25 H 0.050 0.950 26 C -0.143 4.143 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 -7.163 16.653 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.302 3.698 14 O -0.391 6.391 15 C -0.057 4.057 16 H 0.073 0.927 17 C -0.201 4.201 18 N -0.210 5.210 19 C -0.044 4.044 20 H 0.064 0.936 21 C -0.193 4.193 22 C -0.155 4.155 23 C -0.165 4.165 24 C -0.045 4.045 25 H 0.068 0.932 26 C -0.200 4.200 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.815 -5.960 16.405 18.397 hybrid contribution 0.391 -1.043 -0.523 1.230 sum -5.424 -7.003 15.881 18.185 Atomic orbital electron populations 1.22213 0.96962 1.01221 1.02248 1.21418 0.93461 0.84692 1.02384 1.48259 1.64105 1.13209 1.07921 1.19207 0.96441 0.93218 0.78192 1.21409 0.98191 1.30831 1.05980 0.92616 1.24923 0.97474 0.94959 0.96680 1.69925 1.35194 1.32462 1.15825 0.86587 0.84766 0.78144 0.78084 1.20316 1.21209 1.20195 1.19918 0.78247 0.87467 0.84197 1.90664 1.46056 1.16019 1.86380 1.21871 0.98527 0.93498 0.91814 0.92692 1.21953 0.95765 1.00795 1.01587 1.64548 1.19843 1.36656 1.00002 1.22782 0.88148 0.97578 0.95869 0.93616 1.21796 1.00102 0.98173 0.99228 1.22516 0.99266 0.99902 0.93857 1.22470 0.96876 0.98838 0.98288 1.22333 0.96138 0.96442 0.89578 0.93248 1.21994 0.96146 1.02101 0.99787 0.91917 0.92330 0.93373 0.90167 0.91830 0.95263 0.93886 0.92732 0.91648 0.90684 0.91900 0.91681 0.93471 0.91238 0.91416 0.90567 0.91859 0.90931 0.92058 0.93036 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.17 37.16 0.38 -1.98 16 2 C 0.10 1.73 5.77 -4.04 -0.02 1.70 16 3 N -0.60 -12.78 2.46 -175.06 -0.43 -13.21 16 4 C 0.25 6.53 5.21 -5.20 -0.03 6.50 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.52 10.85 4.76 -10.98 -0.05 10.79 16 14 O -0.52 -13.06 14.20 5.56 0.08 -12.98 16 15 C 0.06 0.89 1.46 -68.86 -0.10 0.79 16 16 H 0.06 0.80 5.84 -51.93 -0.30 0.50 16 17 C -0.14 -2.08 7.50 37.16 0.28 -1.80 16 18 N -0.48 -7.38 4.24 -208.32 -0.88 -8.26 16 19 C 0.06 0.91 2.88 -65.79 -0.19 0.72 16 20 H 0.05 0.63 7.81 -51.93 -0.41 0.22 16 21 C -0.14 -2.23 8.08 37.16 0.30 -1.93 16 22 C -0.12 -1.33 6.50 -24.87 -0.16 -1.49 16 23 C -0.13 -1.28 6.57 -25.38 -0.17 -1.45 16 24 C 0.06 0.76 2.45 -66.64 -0.16 0.59 16 25 H 0.05 0.56 6.96 -51.93 -0.36 0.19 16 26 C -0.14 -1.60 8.83 37.16 0.33 -1.27 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.66 8.03 -51.93 -0.42 0.24 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.06 0.89 5.70 -51.93 -0.30 0.60 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.07 1.20 7.08 -51.93 -0.37 0.84 16 37 H 0.06 0.73 5.99 -51.93 -0.31 0.42 16 38 H 0.06 1.28 5.52 -51.93 -0.29 0.99 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.67 7.69 -51.92 -0.40 0.27 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.80 5.09 -51.93 -0.26 0.54 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -32.24 356.45 -8.55 -40.80 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.39 Total: -0.24 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.02 Total: -2.42 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.58 Total: -47.53 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.24 -8.55 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133422094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.767 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds