Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47094 * 2 1 4 4 C 1.46498 * 120.00248 * 274.33585 * 3 2 1 5 5 C 1.50703 * 109.47294 * 277.64984 * 4 3 2 6 6 H 1.07999 * 119.99465 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00138 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99721 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47146 * 120.00402 * 9 7 5 12 12 H 1.48499 * 109.47310 * 240.00645 * 9 7 5 13 13 C 1.34777 * 120.00274 * 94.33959 * 3 2 1 14 14 O 1.21287 * 119.99904 * 4.17303 * 13 3 2 15 15 C 1.50701 * 120.00485 * 184.17656 * 13 3 2 16 16 H 1.09005 * 109.46705 * 25.38933 * 15 13 3 17 17 C 1.53003 * 109.46784 * 265.39269 * 15 13 3 18 18 N 1.46893 * 109.47477 * 145.39195 * 15 13 3 19 19 C 1.47440 * 111.00199 * 227.19742 * 18 15 13 20 20 H 1.09000 * 109.88464 * 242.66298 * 19 18 15 21 21 C 1.52997 * 109.88498 * 3.84970 * 19 18 15 22 22 C 1.54316 * 107.23639 * 123.25494 * 19 18 15 23 23 C 1.55142 * 103.01958 * 22.28432 * 22 19 18 24 24 C 1.47844 * 110.99965 * 348.03939 * 18 15 13 25 25 H 1.09004 * 110.37324 * 332.46189 * 24 18 15 26 26 C 1.52995 * 110.37643 * 94.80619 * 24 18 15 27 27 H 1.09005 * 109.47059 * 64.99553 * 1 2 3 28 28 H 1.09001 * 109.47002 * 184.99328 * 1 2 3 29 29 H 1.08996 * 109.47200 * 304.99308 * 1 2 3 30 30 H 1.09004 * 109.46945 * 239.99522 * 2 1 3 31 31 H 1.08998 * 109.46837 * 120.00055 * 2 1 3 32 32 H 1.09007 * 109.46743 * 37.64489 * 4 3 2 33 33 H 1.08999 * 109.47652 * 157.64617 * 4 3 2 34 34 H 0.97010 * 119.99706 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46709 * 71.44262 * 17 15 13 36 36 H 1.08998 * 109.46691 * 191.43758 * 17 15 13 37 37 H 1.08996 * 109.47219 * 311.44631 * 17 15 13 38 38 H 1.08999 * 109.47677 * 63.78618 * 21 19 18 39 39 H 1.09007 * 109.46952 * 183.78523 * 21 19 18 40 40 H 1.08999 * 109.47352 * 303.77696 * 21 19 18 41 41 H 1.08999 * 110.71050 * 263.90173 * 22 19 18 42 42 H 1.09001 * 110.85423 * 140.73790 * 22 19 18 43 43 H 1.08997 * 110.99615 * 206.25416 * 23 22 19 44 44 H 1.09006 * 111.02497 * 82.44892 * 23 22 19 45 45 H 1.08998 * 109.47611 * 100.45633 * 26 24 18 46 46 H 1.09005 * 109.47594 * 220.45514 * 26 24 18 47 47 H 1.09001 * 109.47180 * 340.45137 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1720 2.1038 -1.2650 5 6 3.4873 1.7315 -1.8996 6 1 4.1428 1.0268 -1.4098 7 6 3.8531 2.2898 -3.1060 8 7 3.0546 3.1476 -3.7027 9 14 5.4837 1.8289 -3.8922 10 1 6.1921 0.8522 -3.0266 11 1 5.2366 1.2209 -5.2244 12 1 6.3185 3.0467 -4.0511 13 6 2.3262 1.9871 1.1638 14 8 2.2716 1.3658 2.2040 15 6 2.7383 3.4367 1.1728 16 1 2.3180 3.9392 0.3016 17 6 4.2647 3.5331 1.1303 18 7 2.2409 4.0796 2.3963 19 6 1.5899 5.3665 2.0898 20 1 2.1331 6.1804 2.5700 21 6 1.5527 5.5833 0.5758 22 6 0.1520 5.2952 2.6454 23 6 0.2514 4.1925 3.7322 24 6 1.2660 3.2126 3.0917 25 1 0.7636 2.5587 2.3788 26 6 1.9644 2.3865 4.1736 27 1 -0.3633 0.4344 -0.9314 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3633 0.5893 0.8418 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3561 1.8374 -1.9371 33 1 2.1510 3.1769 -1.0755 34 1 3.3122 3.5407 -4.5514 35 1 4.6195 3.2436 0.1411 36 1 4.5699 4.5582 1.3401 37 1 4.6919 2.8662 1.8791 38 1 0.9351 4.8133 0.1134 39 1 1.1315 6.5652 0.3596 40 1 2.5650 5.5262 0.1755 41 1 -0.5493 5.0036 1.8636 42 1 -0.1406 6.2474 3.0881 43 1 -0.7131 3.7094 3.8878 44 1 0.6378 4.5986 4.6671 45 1 1.7942 2.8452 5.1476 46 1 1.5619 1.3735 4.1738 47 1 3.0347 2.3521 3.9702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133422707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = 1.084503 kcal Electronic energy + Delta-G solvation = -25060.178788 eV Core-core repulsion = 21858.391701 eV Total energy + Delta-G solvation = -3201.787088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60137 -38.02085 -35.39106 -33.55679 -32.78545 -31.80343 -30.37663 -28.57140 -27.69638 -27.00092 -24.42821 -23.44532 -23.04067 -21.81513 -20.54336 -19.37879 -17.79980 -16.90014 -16.47597 -16.05933 -15.25559 -15.02723 -14.56467 -14.42855 -13.91708 -13.52872 -13.08070 -12.90706 -12.83566 -12.49636 -12.25745 -12.14338 -12.05408 -11.81460 -11.57886 -11.55015 -11.41514 -11.36727 -10.95039 -10.85840 -10.81751 -10.72118 -10.51097 -10.47320 -10.39578 -10.26337 -10.04049 -9.97328 -9.69234 -8.71812 -8.44442 -7.86171 -7.65084 -6.21401 -4.27960 3.19697 3.28560 3.31568 3.38555 3.87892 4.30707 4.33439 4.87298 4.91884 5.06820 5.11622 5.33419 5.48792 5.58075 5.62253 5.65265 5.68626 5.79495 5.83973 5.86521 5.92251 5.96212 6.06075 6.13627 6.19204 6.25581 6.27008 6.31733 6.37001 6.43129 6.46915 6.53878 6.54607 6.61158 6.68532 6.81313 6.91643 7.04216 7.14689 7.43026 7.51256 7.59030 7.73882 8.02343 8.36291 8.77550 9.04955 9.39794 10.85258 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.006421 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.465778 B = 4359.809232 C = 4918.316320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.593 5.593 4 C 0.234 3.766 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.504 3.496 14 O -0.556 6.556 15 C 0.029 3.971 16 H 0.116 0.884 17 C -0.125 4.125 18 N -0.505 5.505 19 C 0.067 3.933 20 H 0.083 0.917 21 C -0.173 4.173 22 C -0.138 4.138 23 C -0.133 4.133 24 C 0.079 3.921 25 H 0.060 0.940 26 C -0.088 4.088 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.021 0.979 46 H 0.052 0.948 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 2.707 8.991 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.010 4.010 3 N -0.324 5.324 4 C 0.114 3.886 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.293 3.707 14 O -0.437 6.437 15 C -0.081 4.081 16 H 0.133 0.867 17 C -0.183 4.183 18 N -0.231 5.231 19 C -0.042 4.042 20 H 0.101 0.899 21 C -0.230 4.230 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.029 4.029 25 H 0.078 0.922 26 C -0.146 4.146 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.592 2.565 9.642 10.984 hybrid contribution 0.181 -0.302 -1.365 1.409 sum -4.411 2.263 8.278 9.649 Atomic orbital electron populations 1.22098 0.97033 1.01126 1.01690 1.21208 0.93141 0.84117 1.02576 1.48325 1.62530 1.13489 1.08066 1.19490 0.97366 0.92330 0.79394 1.21484 1.03705 1.26606 1.05373 0.91991 1.24926 0.97314 0.94774 0.96743 1.69929 1.36632 1.29099 1.17273 0.86488 0.83542 0.78533 0.79248 1.19626 1.20892 1.20759 1.20740 0.76635 0.89950 0.83400 1.90708 1.55033 1.67018 1.30924 1.22564 0.98757 0.91901 0.94906 0.86739 1.21619 0.92322 1.01583 1.02803 1.63956 1.35248 1.02858 1.21037 1.22473 0.93378 0.93378 0.94930 0.89858 1.22358 1.03053 1.01605 0.95984 1.22876 0.96960 0.99308 0.98537 1.22946 0.99322 0.96572 0.98290 1.22804 0.90882 0.92989 0.96202 0.92163 1.21462 1.01697 0.97796 0.93607 0.92611 0.92446 0.93238 0.90576 0.90905 0.95080 0.94169 0.92586 0.90459 0.92370 0.92977 0.92119 0.92189 0.90792 0.91652 0.91309 0.91612 0.91104 0.96042 0.92885 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.11 2.10 6.21 -4.05 -0.03 2.07 16 3 N -0.59 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.23 5.43 5.18 -5.19 -0.03 5.40 16 5 C -0.53 -13.54 8.84 -34.44 -0.30 -13.84 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.50 10.30 5.19 -10.98 -0.06 10.24 16 14 O -0.56 -11.71 9.81 5.55 0.05 -11.65 16 15 C 0.03 0.54 1.85 -68.87 -0.13 0.41 16 16 H 0.12 2.21 1.36 -51.93 -0.07 2.14 16 17 C -0.13 -2.32 9.44 37.16 0.35 -1.97 16 18 N -0.51 -8.53 4.60 -209.05 -0.96 -9.49 16 19 C 0.07 0.97 4.02 -66.73 -0.27 0.70 16 20 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 21 C -0.17 -2.55 7.54 37.16 0.28 -2.27 16 22 C -0.14 -1.78 6.47 -24.91 -0.16 -1.94 16 23 C -0.13 -1.81 6.41 -24.59 -0.16 -1.97 16 24 C 0.08 1.32 2.32 -66.19 -0.15 1.16 16 25 H 0.06 1.15 5.53 -51.93 -0.29 0.87 16 26 C -0.09 -1.49 8.05 37.16 0.30 -1.19 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 31 H 0.07 1.36 7.25 -51.93 -0.38 0.98 16 32 H 0.03 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.04 0.96 5.37 -51.93 -0.28 0.68 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.08 1.57 7.61 -51.93 -0.40 1.18 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.06 0.99 7.11 -51.93 -0.37 0.62 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.18 6.71 -51.93 -0.35 0.84 16 41 H 0.06 0.86 7.79 -51.93 -0.40 0.45 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 45 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 46 H 0.05 0.93 7.26 -51.93 -0.38 0.56 16 47 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -26.73 352.27 -8.65 -35.37 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.26 Total: 4.95 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.07 Total: -3.78 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.66 Total: -45.45 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.05 Total: -11.65 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.73 -8.65 -35.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133422707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.456 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds