Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 N 1.46897 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.46852 * 110.99960 * 170.00453 * 4 3 2 6 6 C 1.53038 * 109.52149 * 185.84175 * 5 4 3 7 7 C 1.53118 * 109.28003 * 300.82097 * 6 5 4 8 8 N 1.46904 * 109.52406 * 177.55838 * 7 6 5 9 9 C 1.46899 * 111.00029 * 155.12475 * 8 7 6 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47127 * 59.99866 * 10 9 8 12 12 C 1.52999 * 109.46991 * 300.00551 * 10 9 8 13 13 C 1.52997 * 109.47232 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47084 * 179.97438 * 13 10 9 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 10 17 17 N 1.31510 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47020 * 59.99943 * 18 16 14 20 20 H 1.48495 * 109.46699 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47033 * 299.99959 * 18 16 14 22 22 C 1.53113 * 109.21365 * 57.62384 * 7 6 5 23 23 C 1.46845 * 111.00423 * 294.21585 * 4 3 2 24 24 H 1.09002 * 109.47161 * 299.99110 * 1 2 3 25 25 H 1.09003 * 109.47511 * 59.99786 * 1 2 3 26 26 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47161 * 240.00890 * 2 1 3 28 28 H 1.08996 * 109.47144 * 120.00321 * 2 1 3 29 29 H 1.09002 * 109.46539 * 60.00509 * 3 2 1 30 30 H 1.08995 * 109.47838 * 300.00529 * 3 2 1 31 31 H 1.08997 * 109.45807 * 65.82967 * 5 4 3 32 32 H 1.09002 * 109.45073 * 305.84986 * 5 4 3 33 33 H 1.09000 * 109.50259 * 180.87677 * 6 5 4 34 34 H 1.09004 * 109.50275 * 60.76427 * 6 5 4 35 35 H 1.08994 * 109.52093 * 297.68533 * 7 6 5 36 36 H 1.00892 * 111.00125 * 279.08618 * 8 7 6 37 37 H 1.09002 * 109.47043 * 60.00207 * 9 8 7 38 38 H 1.09001 * 109.46901 * 300.00429 * 9 8 7 39 39 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 40 40 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 41 41 H 1.09000 * 109.47050 * 180.02562 * 11 10 9 42 42 H 1.09000 * 109.47160 * 179.97438 * 12 10 9 43 43 H 1.09002 * 109.46719 * 299.99711 * 12 10 9 44 44 H 1.08993 * 109.47839 * 59.99553 * 12 10 9 45 45 H 1.09001 * 109.47375 * 299.99867 * 13 10 9 46 46 H 1.09002 * 109.46777 * 60.00422 * 13 10 9 47 47 H 0.97005 * 119.99227 * 180.02562 * 17 16 14 48 48 H 1.09000 * 109.50435 * 62.31757 * 22 7 6 49 49 H 1.09004 * 109.50738 * 182.43647 * 22 7 6 50 50 H 1.08999 * 109.46365 * 294.17756 * 23 4 3 51 51 H 1.09004 * 109.46379 * 54.15301 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0352 2.7928 -0.2373 6 6 5.5582 2.7311 -0.3749 7 6 6.1584 2.1477 0.9073 8 7 7.6153 2.0317 0.7588 9 6 8.2814 2.0545 2.0679 10 6 9.7939 1.9324 1.8727 11 6 10.2950 3.1035 1.0250 12 6 10.1117 0.6156 1.1616 13 6 10.4877 1.9569 3.2361 14 6 11.9775 1.8360 3.0439 15 1 12.3884 1.7507 2.0488 16 6 12.8159 1.8343 4.1385 17 7 12.3155 1.9376 5.3502 18 14 14.6627 1.6851 3.9001 19 1 15.1490 2.8218 3.0775 20 1 15.3359 1.7075 5.2235 21 1 14.9711 0.4069 3.2099 22 6 5.5579 0.7620 1.1597 23 6 4.0347 0.8805 1.2512 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9565 -0.8899 31 1 3.7721 3.4380 0.6009 32 1 3.6037 3.1942 -1.1543 33 1 5.9500 3.7354 -0.5359 34 1 5.8217 2.0970 -1.2214 35 1 5.9289 2.8027 1.7477 36 1 7.8610 1.2005 0.2424 37 1 7.9241 1.2204 2.6719 38 1 8.0552 2.9929 2.5742 39 1 9.8007 3.0865 0.0537 40 1 10.0685 4.0418 1.5316 41 1 11.3725 3.0163 0.8856 42 1 11.1893 0.5288 1.0221 43 1 9.7548 -0.2187 1.7655 44 1 9.6175 0.5986 0.1903 45 1 10.2613 2.8953 3.7423 46 1 10.1309 1.1228 3.8403 47 1 12.9055 1.9367 6.1202 48 1 5.8214 0.0960 0.3380 49 1 5.9494 0.3604 2.0943 50 1 3.7716 1.5347 2.0823 51 1 3.6030 -0.1068 1.4154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135133569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = -30.452806 kcal Electronic energy + Delta-G solvation = -23071.833868 eV Core-core repulsion = 20004.512315 eV Total energy + Delta-G solvation = -3067.321553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.51075 -37.52818 -35.53662 -33.47747 -32.22485 -30.92407 -30.18404 -26.97009 -26.30880 -26.15609 -24.79735 -23.42997 -22.90178 -21.81777 -20.97449 -19.96721 -17.80462 -16.39026 -16.18945 -15.73745 -15.05160 -14.96760 -14.72076 -14.38416 -14.19273 -14.02210 -13.46396 -13.45324 -12.93595 -12.80946 -12.59734 -12.49783 -12.13278 -11.99994 -11.93144 -11.77403 -11.47370 -11.27470 -11.07582 -10.97291 -10.92701 -10.85501 -10.76107 -10.55958 -10.48600 -10.38457 -10.20273 -10.07185 -9.64331 -8.97535 -8.80155 -8.50652 -8.29230 -7.97135 -5.93918 -3.93890 3.36308 3.40751 3.43138 3.66968 4.39320 4.52314 4.56404 4.70202 4.78217 4.89253 5.04094 5.09305 5.12898 5.23177 5.30129 5.39149 5.41751 5.44798 5.50346 5.58268 5.63142 5.68422 5.73883 5.75923 5.79337 5.87455 5.94952 5.98380 6.01335 6.02558 6.19475 6.28771 6.35650 6.38496 6.55737 6.70392 6.83752 6.86742 6.91201 6.93650 7.24792 7.28951 7.30087 7.47546 7.71953 7.77134 7.89123 8.06537 8.51203 9.11311 9.68649 11.17722 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040333 B = 0.002719 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.057224 B =10295.810247 C =10560.784112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.057 3.943 6 C -0.102 4.102 7 C 0.086 3.914 8 N -0.681 5.681 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.128 4.128 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.146 4.146 23 C 0.058 3.942 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.339 0.661 37 H 0.022 0.978 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.014 0.986 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.031 0.969 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.117 -1.543 -11.102 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.024 4.024 8 N -0.311 5.311 9 C -0.058 4.058 10 C -0.058 4.058 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.185 4.185 23 C -0.070 4.070 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.049 0.951 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.787 -1.146 -11.406 23.738 hybrid contribution 0.522 -0.479 1.173 1.370 sum -20.266 -1.625 -10.233 22.761 Atomic orbital electron populations 1.21740 0.95725 1.01745 1.01691 1.21556 0.95249 0.96495 1.02737 1.22130 0.87386 0.97168 1.00595 1.61950 1.06928 1.22327 1.35172 1.22107 0.96092 0.88623 1.00323 1.21542 0.92561 1.01776 0.98153 1.21597 0.88290 0.94949 0.97604 1.60659 1.05442 1.45568 1.19479 1.22116 0.95272 0.99704 0.88683 1.20621 0.91517 0.94832 0.98875 1.21599 1.00574 0.97018 0.98131 1.21764 1.02183 0.96941 0.97699 1.19119 0.94762 0.96852 0.89630 1.21206 0.91659 1.49119 0.92473 0.92352 1.25023 0.98498 0.95745 0.95391 1.69960 1.34914 1.51162 0.97773 0.86721 0.85970 0.78582 0.77092 1.20314 1.21478 1.20370 1.22341 0.94696 0.99220 1.02285 1.22064 0.95522 0.99628 0.89782 0.92922 0.92710 0.92560 0.91127 0.91961 0.95138 0.90919 0.95100 0.90849 0.90890 0.91191 0.91217 0.84146 0.95972 0.91833 0.93857 0.94252 0.92760 0.91783 0.94162 0.94780 0.96758 0.96983 0.93146 0.91045 0.91520 0.95099 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.93 5.86 -26.73 -0.16 -1.08 16 3 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 4 N -0.54 -5.37 4.66 -234.66 -1.09 -6.46 16 5 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 6 C -0.10 -1.13 5.70 -26.65 -0.15 -1.28 16 7 C 0.09 1.07 2.53 -67.59 -0.17 0.90 16 8 N -0.68 -9.90 5.46 -106.60 -0.58 -10.48 16 9 C 0.07 1.23 4.45 -3.83 -0.02 1.22 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 11 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 15 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.15 -1.68 5.35 -26.65 -0.14 -1.82 16 23 C 0.06 0.60 5.29 -3.83 -0.02 0.58 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 30 H 0.07 0.56 7.99 -51.93 -0.41 0.15 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 36 H 0.34 4.82 6.49 -39.30 -0.26 4.57 16 37 H 0.02 0.39 7.50 -51.93 -0.39 0.00 16 38 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 39 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 42 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 49 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -28.72 378.84 -10.67 -39.40 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -10.12 Total: -0.13 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.31 Total: -18.45 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.94 Total: -43.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.72 -10.67 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135133569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.943 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds