Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00181 * 2 1 4 4 C 1.46901 * 110.99667 * 236.04329 * 2 1 3 5 5 C 1.52996 * 110.02095 * 305.37682 * 4 2 1 6 6 N 1.46897 * 109.46993 * 304.22397 * 5 4 2 7 7 C 1.46906 * 111.00236 * 184.85108 * 6 5 4 8 8 C 1.52995 * 109.47299 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47152 * 299.99706 * 8 7 6 10 10 C 1.52995 * 109.47222 * 60.00087 * 8 7 6 11 11 C 1.53005 * 109.46950 * 180.02562 * 8 7 6 12 12 C 1.50700 * 109.46949 * 180.02562 * 11 8 7 13 13 H 1.07993 * 120.00115 * 359.97438 * 12 11 8 14 14 C 1.37882 * 119.99750 * 179.97438 * 12 11 8 15 15 N 1.31513 * 119.99566 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47312 * 90.00242 * 16 14 12 18 18 H 1.48498 * 109.46772 * 209.99895 * 16 14 12 19 19 H 1.48496 * 109.47314 * 329.99964 * 16 14 12 20 20 C 1.54275 * 110.03075 * 183.98480 * 4 2 1 21 21 C 1.54962 * 104.15858 * 217.13778 * 20 4 2 22 22 C 1.54890 * 102.77654 * 37.89007 * 21 20 4 23 23 C 1.53876 * 110.03023 * 66.77167 * 4 2 1 24 24 H 1.09001 * 109.47585 * 191.62338 * 1 2 3 25 25 H 1.08999 * 109.46914 * 71.62094 * 1 2 3 26 26 H 1.09006 * 109.46824 * 311.62598 * 1 2 3 27 27 H 1.08998 * 109.47267 * 54.24112 * 3 2 1 28 28 H 1.08999 * 109.47150 * 174.24403 * 3 2 1 29 29 H 1.08993 * 109.47146 * 294.23976 * 3 2 1 30 30 H 1.09001 * 109.46984 * 64.21711 * 5 4 2 31 31 H 1.08995 * 109.47737 * 184.22303 * 5 4 2 32 32 H 1.00901 * 111.00233 * 60.89538 * 6 5 4 33 33 H 1.09004 * 109.46560 * 300.00308 * 7 6 5 34 34 H 1.08997 * 109.46983 * 59.99500 * 7 6 5 35 35 H 1.09005 * 109.47314 * 60.00264 * 9 8 7 36 36 H 1.08999 * 109.47384 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47421 * 300.00453 * 9 8 7 38 38 H 1.08995 * 109.47518 * 60.00211 * 10 8 7 39 39 H 1.09006 * 109.47030 * 179.97438 * 10 8 7 40 40 H 1.09005 * 109.46881 * 299.99513 * 10 8 7 41 41 H 1.09005 * 109.46501 * 299.99391 * 11 8 7 42 42 H 1.08997 * 109.47382 * 59.99351 * 11 8 7 43 43 H 0.97005 * 119.99518 * 179.97438 * 15 14 12 44 44 H 1.09001 * 110.48127 * 335.78615 * 20 4 2 45 45 H 1.09000 * 110.48469 * 98.42742 * 20 4 2 46 46 H 1.09001 * 110.71949 * 279.57558 * 21 20 4 47 47 H 1.09002 * 110.91927 * 156.29970 * 21 20 4 48 48 H 1.09009 * 110.48392 * 203.40113 * 22 21 20 49 49 H 1.09003 * 110.48508 * 80.76428 * 22 21 20 50 50 H 1.09001 * 110.02945 * 238.56264 * 23 4 2 51 51 H 1.09001 * 110.03307 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7661 -1.1376 5 6 1.4060 -2.1780 -1.1359 6 7 1.6828 -2.8225 0.1548 7 6 1.2324 -4.2208 0.1524 8 6 1.5363 -4.8569 1.5103 9 6 3.0430 -4.8070 1.7710 10 6 0.8026 -4.0867 2.6099 11 6 1.0677 -6.3134 1.5075 12 6 1.3665 -6.9397 2.8452 13 1 1.8433 -6.3574 3.6197 14 6 1.0311 -8.2563 3.0802 15 7 1.2923 -8.8031 4.2474 16 14 0.2058 -9.2634 1.7408 17 1 1.2425 -9.9340 0.9158 18 1 -0.6718 -10.2878 2.3616 19 1 -0.6094 -8.3689 0.8802 20 6 3.5346 -0.8358 -1.0608 21 6 3.9928 -0.7348 -2.5377 22 6 2.9944 0.2866 -3.1370 23 6 1.6519 -0.0531 -2.4572 24 1 -0.3634 -1.0066 0.2070 25 1 -0.3633 0.3240 -0.9752 26 1 -0.3633 0.6827 0.7682 27 1 1.5650 1.9258 0.8339 28 1 3.0802 1.3441 0.1031 29 1 1.7318 1.8618 -0.9370 30 1 0.3285 -2.1221 -1.2904 31 1 1.8583 -2.7615 -1.9377 32 1 1.2612 -2.3081 0.9136 33 1 0.1588 -4.2563 -0.0330 34 1 1.7547 -4.7694 -0.6313 35 1 3.3773 -3.7694 1.7729 36 1 3.2596 -5.2605 2.7382 37 1 3.5658 -5.3556 0.9876 38 1 -0.2709 -4.1223 2.4242 39 1 1.0188 -4.5402 3.5773 40 1 1.1369 -3.0492 2.6118 41 1 -0.0058 -6.3493 1.3215 42 1 1.5907 -6.8618 0.7240 43 1 1.0561 -9.7292 4.4129 44 1 3.9259 0.0009 -0.4820 45 1 3.8523 -1.7834 -0.6259 46 1 3.9036 -1.7001 -3.0360 47 1 5.0144 -0.3606 -2.6035 48 1 2.9187 0.1576 -4.2167 49 1 3.2983 1.3048 -2.8939 50 1 1.0661 -0.7133 -3.0968 51 1 1.0942 0.8611 -2.2536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135133852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = -8.359781 kcal Electronic energy + Delta-G solvation = -24099.483004 eV Core-core repulsion = 21033.119476 eV Total energy + Delta-G solvation = -3066.363528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18800 -37.45237 -35.07563 -34.00448 -32.08482 -29.12879 -29.02981 -27.67889 -27.45300 -26.27512 -25.29146 -23.66850 -23.28918 -21.68427 -20.64925 -18.69133 -17.68231 -16.75823 -16.72956 -15.83852 -15.26984 -14.96515 -14.55739 -14.26333 -14.09532 -13.84671 -13.53043 -13.34327 -12.92064 -12.66197 -12.43287 -12.30389 -12.13757 -12.00551 -11.82108 -11.62419 -11.56578 -11.28670 -11.08373 -10.99983 -10.96141 -10.85090 -10.77212 -10.68949 -10.43116 -10.40164 -10.23256 -9.71384 -9.62156 -9.19129 -8.83383 -8.45165 -8.33797 -7.95076 -5.95507 -3.91044 3.35279 3.42651 3.46446 3.76822 4.30732 4.52336 4.53440 4.61158 4.83667 5.01468 5.07127 5.16708 5.24272 5.28005 5.37012 5.37829 5.44086 5.48823 5.53293 5.61139 5.67115 5.68738 5.72749 5.76966 5.80092 5.81541 5.88960 5.94300 5.98916 6.00680 6.24465 6.26521 6.35055 6.46215 6.52795 6.70742 6.79035 6.88841 6.94938 7.03330 7.17070 7.23470 7.28618 7.41697 7.46228 7.55026 7.87675 7.91222 8.65468 9.11245 9.67975 11.17737 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003672 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.386198 B = 7622.420980 C = 7841.729381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.527 5.527 3 C 0.020 3.980 4 C 0.115 3.885 5 C 0.074 3.926 6 N -0.675 5.675 7 C 0.067 3.933 8 C -0.047 4.047 9 C -0.117 4.117 10 C -0.130 4.130 11 C -0.005 4.005 12 C -0.505 4.505 13 H 0.078 0.922 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.875 3.125 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.268 1.268 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.349 0.651 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.011 0.989 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 20.763 -13.763 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.128 4.128 4 C 0.025 3.975 5 C -0.056 4.056 6 N -0.308 5.308 7 C -0.062 4.062 8 C -0.047 4.047 9 C -0.174 4.174 10 C -0.187 4.187 11 C -0.042 4.042 12 C -0.543 4.543 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.703 3.297 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.145 4.145 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.194 4.194 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.888 20.208 -13.367 24.303 hybrid contribution -1.893 -0.216 -1.447 2.393 sum -0.005 19.992 -14.815 24.883 Atomic orbital electron populations 1.22446 0.88057 1.02460 1.00017 1.62131 1.07134 1.13363 1.42344 1.22467 1.01312 0.89036 1.00020 1.21795 0.95923 0.92666 0.87145 1.21981 0.96891 0.92948 0.93794 1.60399 1.63860 1.02649 1.03891 1.22127 0.96465 0.88447 0.99171 1.20385 0.96261 0.96263 0.91826 1.21601 0.94483 0.99870 1.01435 1.21767 0.98574 0.97918 1.00449 1.19633 0.95551 0.91352 0.97697 1.21158 1.38849 0.96320 0.97946 0.90402 1.25018 0.95613 0.97833 0.95163 1.69915 1.48682 1.13596 1.22454 0.86851 0.79980 0.80163 0.82681 1.20472 1.21634 1.19231 1.22445 0.92645 1.03762 0.95625 1.22539 0.98398 0.99038 0.96473 1.22297 0.94996 0.99156 0.99353 1.22847 0.98106 1.00612 0.97823 0.91431 0.95600 0.91566 0.91743 0.90932 0.95542 0.96088 0.91035 0.82940 0.96439 0.91932 0.93455 0.92318 0.94395 0.94398 0.91327 0.94281 0.97086 0.97257 0.92956 0.91290 0.89210 0.91526 0.91714 0.92072 0.92032 0.91695 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.53 60.06 0.51 0.69 16 2 N -0.53 -5.49 4.17 -234.10 -0.98 -6.46 16 3 C 0.02 0.17 8.95 60.06 0.54 0.71 16 4 C 0.11 1.19 0.37 -130.48 -0.05 1.14 16 5 C 0.07 0.90 3.71 -3.83 -0.01 0.88 16 6 N -0.67 -9.59 5.04 -113.78 -0.57 -10.16 16 7 C 0.07 1.12 4.64 -3.82 -0.02 1.10 16 8 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 9 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 10 C -0.13 -2.46 7.89 37.15 0.29 -2.16 16 11 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 12 C -0.50 -14.12 8.20 -34.44 -0.28 -14.40 16 13 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 14 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 15 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 16 Si 0.88 22.04 27.47 -169.99 -4.67 17.38 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 20 C -0.11 -1.13 5.78 -25.03 -0.14 -1.27 16 21 C -0.13 -1.13 6.91 -24.70 -0.17 -1.31 16 22 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 23 C -0.15 -1.40 4.85 -25.61 -0.12 -1.52 16 24 H 0.07 0.73 6.24 -51.93 -0.32 0.41 16 25 H 0.03 0.24 6.61 -51.93 -0.34 -0.11 16 26 H 0.07 0.58 7.96 -51.93 -0.41 0.17 16 27 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 28 H 0.07 0.64 6.02 -51.93 -0.31 0.32 16 29 H 0.03 0.22 6.10 -51.93 -0.32 -0.10 16 30 H 0.02 0.26 6.81 -51.93 -0.35 -0.10 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.35 5.10 5.35 -39.29 -0.21 4.89 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.84 7.60 -51.93 -0.39 0.45 16 36 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 40 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 41 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 42 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 0.71 5.72 -51.93 -0.30 0.42 16 45 H 0.09 1.13 7.39 -51.93 -0.38 0.75 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 51 H 0.06 0.59 5.19 -51.93 -0.27 0.32 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -29.21 364.05 -9.08 -38.28 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.51 Total: 1.51 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 0.39 Total: -18.72 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.78 Total: -43.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.21 -9.08 -38.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135133852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.924 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds