Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.53006 * 109.46865 * 239.99944 * 2 1 3 5 5 C 1.50695 * 109.46829 * 60.00096 * 4 2 1 6 6 H 1.07998 * 120.00779 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99688 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00243 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00252 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47204 * 89.99463 * 9 7 5 11 11 H 1.48499 * 109.47199 * 209.99885 * 9 7 5 12 12 H 1.48497 * 109.46769 * 329.99653 * 9 7 5 13 13 C 1.52996 * 109.47257 * 119.99923 * 2 1 3 14 14 N 1.46901 * 109.47397 * 299.99830 * 13 2 1 15 15 C 1.46897 * 111.00289 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47007 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47116 * 179.97438 * 16 15 14 18 18 N 1.46897 * 109.47166 * 179.97438 * 17 16 15 19 19 C 1.46854 * 110.99665 * 170.00131 * 18 17 16 20 20 C 1.53037 * 109.51886 * 185.84309 * 19 18 17 21 21 C 1.53126 * 109.27801 * 300.81620 * 20 19 18 22 22 C 1.53124 * 109.15878 * 57.65645 * 21 20 19 23 23 C 1.46844 * 111.00090 * 294.20807 * 18 17 16 24 24 H 1.09004 * 109.46590 * 300.00138 * 1 2 3 25 25 H 1.09002 * 109.47358 * 59.99803 * 1 2 3 26 26 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46862 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47199 * 299.99764 * 3 2 1 29 29 H 1.08994 * 109.47174 * 59.99965 * 3 2 1 30 30 H 1.08996 * 109.46750 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.46874 * 299.99629 * 4 2 1 32 32 H 0.96996 * 120.00471 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47110 * 179.97438 * 13 2 1 34 34 H 1.08996 * 109.47465 * 59.99770 * 13 2 1 35 35 H 1.00899 * 110.99827 * 56.03983 * 14 13 2 36 36 H 1.08995 * 109.47105 * 59.99927 * 15 14 13 37 37 H 1.09004 * 109.47244 * 300.00095 * 15 14 13 38 38 H 1.08995 * 109.47303 * 59.99981 * 16 15 14 39 39 H 1.09003 * 109.47067 * 299.99308 * 16 15 14 40 40 H 1.09004 * 109.46918 * 59.99611 * 17 16 15 41 41 H 1.09003 * 109.46728 * 300.00185 * 17 16 15 42 42 H 1.08994 * 109.46310 * 65.82535 * 19 18 17 43 43 H 1.09004 * 109.45830 * 305.85222 * 19 18 17 44 44 H 1.09000 * 109.50480 * 180.88135 * 20 19 18 45 45 H 1.08992 * 109.50737 * 60.75564 * 20 19 18 46 46 H 1.08998 * 109.52297 * 177.56592 * 21 20 19 47 47 H 1.08999 * 109.51925 * 297.75795 * 21 20 19 48 48 H 1.08999 * 109.50059 * 62.28737 * 22 21 20 49 49 H 1.08993 * 109.49981 * 182.40384 * 22 21 20 50 50 H 1.09002 * 109.46133 * 294.17882 * 23 18 17 51 51 H 1.09002 * 109.46211 * 54.14407 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7319 8 7 2.6262 -1.5515 -3.8527 9 14 1.2469 0.3979 -5.2572 10 1 2.2249 1.4396 -5.6620 11 1 1.0816 -0.5815 -6.3611 12 1 -0.0611 1.0354 -4.9610 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0220 -0.6944 3.6703 16 6 1.4924 0.0534 4.8955 17 6 1.9830 -0.6403 6.1679 18 7 1.4751 0.0781 7.3443 19 6 1.7230 -0.6848 8.5743 20 6 1.0551 0.0205 9.7569 21 6 1.6243 1.4359 9.8885 22 6 1.3961 2.1932 8.5773 23 6 2.0541 1.4249 7.4290 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1299 -0.7209 -1.2495 31 1 1.6767 -1.7489 -1.2492 32 1 2.8605 -1.8830 -4.7336 33 1 3.1300 -0.7216 1.2489 34 1 1.6767 -1.7488 1.2493 35 1 0.5439 0.0415 2.4402 36 1 3.1118 -0.6939 3.6868 37 1 1.6589 -1.7221 3.6874 38 1 0.4026 0.0525 4.8788 39 1 1.8552 1.0812 4.8787 40 1 3.0729 -0.6398 6.1849 41 1 1.6199 -1.6680 6.1845 42 1 2.7966 -0.7512 8.7503 43 1 1.3096 -1.6879 8.4691 44 1 1.2524 -0.5376 10.6722 45 1 -0.0203 0.0750 9.5879 46 1 1.1205 1.9569 10.7026 47 1 2.6929 1.3808 10.0960 48 1 0.3261 2.2819 8.3898 49 1 1.8371 3.1873 8.6499 50 1 3.1262 1.3485 7.6103 51 1 1.8813 1.9541 6.4919 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135134538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = -33.760051 kcal Electronic energy + Delta-G solvation = -22441.860045 eV Core-core repulsion = 19374.395079 eV Total energy + Delta-G solvation = -3067.464966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.34309 -37.71008 -35.51568 -33.75752 -32.23974 -31.18820 -30.22152 -26.99005 -26.30195 -26.03022 -24.55272 -23.45738 -22.90413 -21.84679 -20.97086 -19.98737 -17.79588 -16.46614 -16.21498 -15.89901 -15.18754 -14.89019 -14.80767 -14.66174 -14.19079 -13.91617 -13.78375 -13.56913 -13.35365 -12.90242 -12.61693 -12.48803 -12.21349 -11.99156 -11.79560 -11.59819 -11.48769 -11.26547 -11.11055 -10.96515 -10.91028 -10.77977 -10.73910 -10.65066 -10.47517 -10.38785 -10.21995 -10.08400 -9.64507 -8.98276 -8.79850 -8.56259 -8.29465 -8.03640 -5.93947 -3.93920 3.35036 3.41404 3.44303 3.58194 4.40537 4.49645 4.51471 4.58407 4.62624 4.88938 4.94727 5.05945 5.16708 5.21518 5.27985 5.29956 5.36561 5.41747 5.46049 5.55973 5.57635 5.62603 5.67655 5.73429 5.76913 5.80615 5.82730 5.89828 6.01700 6.04988 6.14777 6.20634 6.31167 6.38219 6.55254 6.70143 6.82529 6.85627 6.86589 6.87089 7.24612 7.27376 7.29679 7.45469 7.71528 7.75363 7.89003 8.06549 8.51191 9.11512 9.68668 11.17716 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.048574 B = 0.002274 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.300468 B =12308.167080 C =12555.092922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.112 4.112 17 C 0.057 3.943 18 N -0.538 5.538 19 C 0.055 3.945 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.051 3.949 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.338 0.662 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.030 0.970 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 3.440 26.344 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.151 4.151 17 C -0.071 4.071 18 N -0.263 5.263 19 C -0.073 4.073 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.077 4.077 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.049 0.951 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.903 3.830 26.161 26.509 hybrid contribution 0.149 -0.628 -0.880 1.091 sum -1.753 3.202 25.282 25.544 Atomic orbital electron populations 1.21771 0.96098 1.00349 1.00428 1.20627 0.94728 0.96115 0.94417 1.21596 0.99723 0.95845 1.00148 1.19127 0.96093 0.94983 0.90224 1.21242 1.30707 1.11844 0.90609 0.92283 1.25029 0.95476 0.95130 0.99075 1.69965 1.37377 1.23197 1.23249 0.86655 0.79230 0.79399 0.83076 1.20794 1.21427 1.19944 1.22096 0.99684 0.94640 0.89408 1.60540 1.16332 1.53810 1.01223 1.21876 1.00206 0.95113 0.89903 1.21557 1.01413 1.00056 0.92030 1.22069 0.97293 0.97841 0.89881 1.61907 1.59269 1.02740 1.02363 1.22077 0.98173 0.97223 0.89827 1.21583 1.01064 0.95778 0.97039 1.21589 1.00689 0.96040 0.97660 1.21590 1.01810 0.98065 0.94064 1.22161 0.96021 0.89863 0.99608 0.94765 0.91725 0.94134 0.94239 0.92725 0.93879 0.96717 0.96933 0.93196 0.91716 0.95971 0.84300 0.91533 0.95791 0.91366 0.91083 0.94878 0.90905 0.95138 0.90859 0.91731 0.91063 0.91909 0.92435 0.91049 0.91624 0.95133 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.28 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.24 4.65 -3.83 -0.02 1.23 16 14 N -0.69 -10.16 5.71 -113.78 -0.65 -10.81 16 15 C 0.06 0.73 5.69 -3.83 -0.02 0.71 16 16 C -0.11 -1.19 5.40 -26.73 -0.14 -1.33 16 17 C 0.06 0.55 4.96 -3.82 -0.02 0.53 16 18 N -0.54 -5.02 4.66 -234.66 -1.09 -6.11 16 19 C 0.05 0.44 5.46 -3.83 -0.02 0.42 16 20 C -0.12 -0.81 6.09 -26.65 -0.16 -0.98 16 21 C -0.12 -0.83 6.00 -26.60 -0.16 -0.99 16 22 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 23 C 0.05 0.45 5.29 -3.84 -0.02 0.43 16 24 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 4.82 6.77 -39.29 -0.27 4.56 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 40 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.08 0.75 6.21 -51.93 -0.32 0.43 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -29.10 381.20 -11.20 -40.30 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -10.22 Total: -1.04 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.70 Total: -18.50 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -1.01 Total: -43.25 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.10 -11.20 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135134538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.544 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds