Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47250 * 2 1 4 4 C 1.53000 * 109.47058 * 239.99665 * 2 1 3 5 5 C 1.50698 * 109.46861 * 60.00400 * 4 2 1 6 6 H 1.07997 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99921 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47138 * 90.00370 * 9 7 5 11 11 H 1.48505 * 109.47266 * 210.00315 * 9 7 5 12 12 H 1.48503 * 109.47036 * 329.99992 * 9 7 5 13 13 C 1.52999 * 109.47156 * 119.99981 * 2 1 3 14 14 N 1.46902 * 109.47167 * 299.99798 * 13 2 1 15 15 C 1.46896 * 111.00318 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47137 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47072 * 180.02562 * 16 15 14 18 18 C 1.48005 * 110.99589 * 298.72149 * 17 16 15 19 19 C 1.50446 * 112.82026 * 191.34576 * 18 17 16 20 20 C 1.54308 * 108.50060 * 93.73026 * 19 18 17 21 21 C 1.45883 * 112.18431 * 281.45947 * 20 19 18 22 22 C 1.54304 * 112.18347 * 61.11770 * 21 20 19 23 23 C 1.47997 * 110.99976 * 170.00224 * 17 16 15 24 24 H 1.08997 * 109.47564 * 300.00293 * 1 2 3 25 25 H 1.09002 * 109.47040 * 59.99900 * 1 2 3 26 26 H 1.09002 * 109.47406 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47474 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47180 * 300.00014 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99716 * 3 2 1 30 30 H 1.09005 * 109.47135 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47661 * 300.00191 * 4 2 1 32 32 H 0.96999 * 120.00357 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47513 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.47297 * 59.99809 * 13 2 1 35 35 H 1.00902 * 110.99682 * 56.04128 * 14 13 2 36 36 H 1.09002 * 109.46638 * 60.00543 * 15 14 13 37 37 H 1.08996 * 109.47219 * 300.00363 * 15 14 13 38 38 H 1.08993 * 109.47007 * 60.00455 * 16 15 14 39 39 H 1.08996 * 109.47340 * 300.00261 * 16 15 14 40 40 H 1.08997 * 108.81399 * 312.20647 * 18 17 16 41 41 H 1.08996 * 108.81387 * 70.48747 * 18 17 16 42 42 H 1.08998 * 109.63517 * 334.02223 * 19 18 17 43 43 H 1.09008 * 109.63095 * 213.42905 * 19 18 17 44 44 H 1.09005 * 108.94016 * 160.76067 * 20 19 18 45 45 H 1.09000 * 108.87229 * 42.10953 * 20 19 18 46 46 H 1.08999 * 108.93522 * 300.42299 * 21 20 19 47 47 H 1.08996 * 108.93945 * 181.82150 * 21 20 19 48 48 H 1.09000 * 109.63094 * 161.75714 * 22 21 20 49 49 H 1.09003 * 109.63551 * 41.17044 * 22 21 20 50 50 H 1.09000 * 108.80687 * 205.70299 * 23 17 16 51 51 H 1.09000 * 108.80895 * 324.08003 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2255 1.4408 -5.6613 11 1 1.0837 -0.5808 -6.3614 12 1 -0.0607 1.0351 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6951 3.6703 16 6 1.4912 0.0528 4.8955 17 7 1.9623 -0.6133 6.1172 18 6 1.4622 -2.0044 6.1892 19 6 1.6863 -2.6361 7.5362 20 6 0.4176 -2.4312 8.3903 21 6 0.3391 -1.0845 8.9458 22 6 0.2834 -0.0031 7.8465 23 6 1.6744 0.2084 7.3140 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7209 -1.2494 31 1 1.6766 -1.7489 -1.2492 32 1 2.8615 -1.8825 -4.7336 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.5438 0.0414 2.4401 36 1 3.1107 -0.6952 3.6873 37 1 1.6570 -1.7224 3.6869 38 1 0.4015 0.0526 4.8783 39 1 1.8547 1.0803 4.8791 40 1 0.3937 -2.0054 5.9740 41 1 1.9716 -2.6007 5.4323 42 1 2.5376 -2.1629 8.0255 43 1 1.8769 -3.7023 7.4135 44 1 0.4216 -3.1517 9.2082 45 1 -0.4592 -2.6086 7.7674 46 1 1.2142 -0.9084 9.5713 47 1 -0.5560 -1.0081 9.5630 48 1 -0.0930 0.9288 8.2683 49 1 -0.3711 -0.3340 7.0400 50 1 2.3918 -0.0443 8.0947 51 1 1.7937 1.2604 7.0550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135140256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -24.172706 kcal Electronic energy + Delta-G solvation = -22942.014576 eV Core-core repulsion = 19874.965348 eV Total energy + Delta-G solvation = -3067.049228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66475 -37.66677 -35.55278 -33.69105 -32.42999 -32.09058 -29.04894 -26.94114 -26.30711 -26.04457 -25.20408 -24.36101 -22.41395 -21.69785 -20.80962 -19.67528 -17.81696 -16.58475 -16.31991 -16.14330 -15.27809 -14.96185 -14.94856 -14.48450 -14.05663 -13.74164 -13.72480 -13.40890 -13.32574 -12.90223 -12.58613 -12.47492 -12.40170 -12.00553 -11.89472 -11.56495 -11.40813 -11.20737 -11.09484 -10.96780 -10.86990 -10.86044 -10.74777 -10.67077 -10.50334 -10.45604 -10.22078 -10.08345 -9.64647 -8.98802 -8.80079 -8.35237 -8.29342 -8.02859 -5.93878 -3.93875 3.34975 3.41363 3.44051 3.58259 4.33269 4.39355 4.49887 4.58688 4.71095 4.81081 4.92682 5.07880 5.11879 5.16506 5.23234 5.37274 5.41851 5.42676 5.53792 5.55652 5.66668 5.72371 5.74072 5.76103 5.80490 5.81990 5.92368 5.96602 6.00311 6.03297 6.03724 6.12128 6.29544 6.37926 6.54600 6.69800 6.81862 6.86181 6.94030 6.99662 7.24178 7.27117 7.29690 7.44611 7.70669 7.74714 7.89064 8.06639 8.51157 9.11557 9.68718 11.17833 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.002561 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.623879 B =10931.727118 C =11144.476389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.072 3.928 14 N -0.687 5.687 15 C 0.061 3.939 16 C 0.064 3.936 17 N -0.548 5.548 18 C 0.060 3.940 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.061 3.939 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.335 0.665 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 0.519 25.131 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.056 4.056 14 N -0.319 5.319 15 C -0.069 4.069 16 C -0.065 4.065 17 N -0.273 5.273 18 C -0.067 4.067 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.189 4.189 23 C -0.067 4.067 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.968 0.821 24.983 25.172 hybrid contribution -1.744 -0.451 -0.922 2.024 sum -4.712 0.370 24.060 24.520 Atomic orbital electron populations 1.21767 0.96169 1.00292 1.00369 1.20625 0.94658 0.96158 0.94423 1.21594 0.99801 0.95789 1.00113 1.19129 0.96149 0.94970 0.90198 1.21239 1.30705 1.11856 0.90613 0.92304 1.25023 0.95458 0.95123 0.99057 1.69968 1.37369 1.23190 1.23259 0.86662 0.79221 0.79415 0.83101 1.20773 1.21416 1.19969 1.22086 0.99815 0.94540 0.89183 1.60497 1.16068 1.53989 1.01332 1.21925 1.01149 0.94752 0.89067 1.22063 0.96977 0.98737 0.88680 1.61804 1.61620 1.01806 1.02113 1.21817 0.97980 0.89013 0.97851 1.21441 0.98241 1.00677 0.95534 1.20616 0.98260 0.97273 0.99803 1.20542 1.01908 0.95015 0.97938 1.21934 0.98912 0.99178 0.98890 1.21875 0.95085 0.97210 0.92503 0.94862 0.91725 0.94180 0.94155 0.92746 0.93903 0.96649 0.96938 0.93184 0.91532 0.96010 0.84620 0.90470 0.95866 0.95441 0.89948 0.95001 0.90866 0.90658 0.91156 0.92181 0.92359 0.91985 0.92474 0.91415 0.91816 0.90914 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.89 37.15 0.29 -2.13 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.07 1.28 4.65 -3.82 -0.02 1.27 16 14 N -0.69 -10.17 5.71 -113.78 -0.65 -10.82 16 15 C 0.06 0.78 5.49 -3.83 -0.02 0.76 16 16 C 0.06 0.70 5.12 -3.82 -0.02 0.68 16 17 N -0.55 -5.56 4.71 -235.91 -1.11 -6.67 16 18 C 0.06 0.57 4.32 -4.49 -0.02 0.55 16 19 C -0.12 -0.95 5.63 -27.32 -0.15 -1.10 16 20 C -0.12 -0.86 5.30 -29.41 -0.16 -1.02 16 21 C -0.12 -0.79 5.30 -29.42 -0.16 -0.95 16 22 C -0.15 -1.14 5.60 -27.33 -0.15 -1.29 16 23 C 0.06 0.52 5.16 -4.50 -0.02 0.49 16 24 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 4.76 6.77 -39.29 -0.27 4.50 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.30 6.67 -51.93 -0.35 -0.04 16 38 H 0.03 0.30 7.81 -51.93 -0.41 -0.10 16 39 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 40 H 0.03 0.32 6.44 -51.93 -0.33 -0.02 16 41 H 0.07 0.75 6.91 -51.93 -0.36 0.39 16 42 H 0.07 0.62 7.08 -51.93 -0.37 0.25 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 46 H 0.06 0.40 7.52 -51.93 -0.39 0.01 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 50 H 0.07 0.59 6.59 -51.93 -0.34 0.25 16 51 H 0.07 0.57 7.63 -51.93 -0.40 0.18 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -28.85 371.25 -11.00 -39.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -9.86 Total: -0.32 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.69 Total: -18.02 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -1.03 Total: -43.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.85 -11.00 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135140256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds