Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.53000 * 109.47597 * 189.99795 * 6 5 4 8 8 N 1.46891 * 109.47843 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00515 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47425 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47109 * 300.00148 * 10 9 8 12 12 C 1.52999 * 109.47109 * 59.99959 * 10 9 8 13 13 C 1.53000 * 109.47013 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.46812 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00390 * 359.97438 * 14 13 10 16 16 C 1.37885 * 119.99890 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99784 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47076 * 90.00232 * 18 16 14 20 20 H 1.48505 * 109.46548 * 209.99796 * 18 16 14 21 21 H 1.48500 * 109.47500 * 329.99975 * 18 16 14 22 22 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 23 23 C 1.53042 * 109.52278 * 298.25596 * 22 5 4 24 24 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 25 25 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 26 26 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 27 27 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 28 28 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 29 29 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 30 30 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 31 31 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 32 32 H 1.08997 * 109.47358 * 309.99752 * 6 5 4 33 33 H 1.09001 * 109.47788 * 69.99563 * 6 5 4 34 34 H 1.09007 * 109.46763 * 300.00403 * 7 6 5 35 35 H 1.09001 * 109.46741 * 59.99127 * 7 6 5 36 36 H 1.00907 * 111.00116 * 56.04257 * 8 7 6 37 37 H 1.09000 * 109.46986 * 300.00409 * 9 8 7 38 38 H 1.09008 * 109.46608 * 59.99978 * 9 8 7 39 39 H 1.08997 * 109.47160 * 60.00264 * 11 10 9 40 40 H 1.09004 * 109.46754 * 179.97438 * 11 10 9 41 41 H 1.08998 * 109.47341 * 299.99685 * 11 10 9 42 42 H 1.09000 * 109.46853 * 60.00444 * 12 10 9 43 43 H 1.09000 * 109.47029 * 179.97438 * 12 10 9 44 44 H 1.08997 * 109.47479 * 299.99931 * 12 10 9 45 45 H 1.09000 * 109.47514 * 299.99902 * 13 10 9 46 46 H 1.08998 * 109.47330 * 60.00381 * 13 10 9 47 47 H 0.97006 * 119.99772 * 180.02562 * 17 16 14 48 48 H 1.08993 * 109.46313 * 58.27251 * 22 5 4 49 49 H 1.09000 * 109.46480 * 178.25361 * 22 5 4 50 50 H 1.08997 * 109.50758 * 179.11703 * 23 22 5 51 51 H 1.08998 * 109.50897 * 299.20258 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.9172 -0.0990 2.5660 8 7 7.3741 -0.0059 2.7282 9 6 7.8418 -0.8903 3.8039 10 6 9.3603 -0.7655 3.9428 11 6 10.0277 -1.1672 2.6259 12 6 9.7245 0.6822 4.2783 13 6 9.8474 -1.6871 5.0628 14 6 11.3432 -1.5646 5.1992 15 1 11.8917 -0.8966 4.5516 16 6 12.0117 -2.3054 6.1508 17 7 11.3439 -3.1192 6.9390 18 14 13.8657 -2.1530 6.3204 19 1 14.1872 -1.0764 7.2913 20 1 14.4258 -3.4401 6.8051 21 1 14.4581 -1.8215 4.9996 22 6 3.5710 -0.6600 1.2779 23 6 2.0417 -0.7151 1.2536 24 1 -0.3633 0.5184 0.8873 25 1 -0.3634 0.5092 -0.8926 26 1 -0.3633 -1.0277 0.0054 27 1 1.8942 -0.5163 -0.8882 28 1 1.6470 1.9699 0.8679 29 1 1.7172 1.9445 -0.9111 30 1 3.9400 2.4612 0.0747 31 1 3.9676 0.9199 -0.8148 32 1 5.9573 0.5432 0.5102 33 1 5.7414 1.8602 1.6879 34 1 5.4283 0.1922 3.4958 35 1 5.6443 -1.1248 2.3181 36 1 7.6592 0.9476 2.8948 37 1 7.3667 -0.6038 4.7421 38 1 7.5819 -1.9216 3.5650 39 1 9.6808 -0.5109 1.8278 40 1 11.1096 -1.0778 2.7248 41 1 9.7683 -2.1985 2.3869 42 1 9.2491 0.9683 5.2165 43 1 10.8063 0.7710 4.3777 44 1 9.3775 1.3385 3.4802 45 1 9.3720 -1.4014 6.0011 46 1 9.5881 -2.7184 4.8233 47 1 11.8141 -3.6401 7.6088 48 1 3.9666 -1.1655 0.3970 49 1 3.9378 -1.1558 2.1766 50 1 1.7152 -1.7549 1.2381 51 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135148822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -29.001468 kcal Electronic energy + Delta-G solvation = -22740.462900 eV Core-core repulsion = 19673.204281 eV Total energy + Delta-G solvation = -3067.258619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.53312 -37.66931 -35.62833 -33.75346 -32.14668 -31.12411 -29.45050 -27.20853 -26.56391 -26.30017 -24.60667 -23.78091 -22.70353 -22.00524 -20.89133 -19.87083 -17.83403 -16.32356 -16.22397 -15.74138 -15.31863 -14.90730 -14.59880 -14.44057 -14.33290 -13.91249 -13.83162 -13.53716 -12.93903 -12.79040 -12.63739 -12.45982 -12.22564 -12.08051 -11.97343 -11.82485 -11.45033 -11.41901 -11.18925 -10.95959 -10.89130 -10.80301 -10.75989 -10.52699 -10.47744 -10.31090 -10.22798 -10.09324 -9.66247 -9.00040 -8.81118 -8.46161 -8.30087 -8.07645 -5.94594 -3.94578 3.34365 3.40913 3.43927 3.63870 4.44817 4.48027 4.51041 4.53946 4.66730 4.90598 5.04514 5.13218 5.14892 5.22556 5.28385 5.37845 5.39711 5.41167 5.45158 5.55780 5.61950 5.67129 5.69402 5.76286 5.78775 5.85366 5.89804 5.90397 5.95475 6.00085 6.02734 6.17650 6.28334 6.35531 6.53243 6.68061 6.80516 6.84840 6.90598 6.93655 7.22958 7.24883 7.28160 7.42279 7.68827 7.73269 7.87832 8.05820 8.50290 9.10767 9.68011 11.17073 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.045387 B = 0.002465 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.774666 B =11354.862408 C =11688.907559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.058 3.942 7 C 0.055 3.945 8 N -0.687 5.687 9 C 0.072 3.928 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.047 3.953 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.338 0.662 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.258 0.742 48 H 0.033 0.967 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.425 8.112 -13.884 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.072 4.072 5 N -0.263 5.263 6 C -0.069 4.069 7 C -0.075 4.075 8 N -0.320 5.320 9 C -0.057 4.057 10 C -0.059 4.059 11 C -0.173 4.173 12 C -0.187 4.187 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.080 4.080 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.487 7.760 -13.844 25.132 hybrid contribution 1.112 0.026 0.359 1.168 sum -18.375 7.786 -13.485 24.085 Atomic orbital electron populations 1.21808 0.95162 1.01629 1.01699 1.21197 0.95563 0.96287 0.98352 1.21639 0.94663 0.96493 1.02035 1.22067 0.95720 0.98937 0.90471 1.61965 1.12521 1.14281 1.37522 1.22048 0.86331 1.00170 0.98389 1.22056 0.89012 0.99488 0.96946 1.60549 1.10309 1.12940 1.48160 1.22091 0.96734 0.96328 0.90528 1.20626 0.91157 0.96379 0.97697 1.21601 1.00403 0.99596 0.95732 1.21771 1.02482 0.95656 0.98748 1.19128 0.95890 0.93668 0.91740 1.21240 0.92508 1.23704 1.16986 0.92293 1.25028 0.98016 0.95571 0.96075 1.69970 1.35421 1.27061 1.21300 0.86656 0.86162 0.77283 0.78268 1.20835 1.21393 1.19925 1.22225 0.95528 0.89009 1.01275 1.21664 0.94838 1.00209 0.98251 0.92592 0.92864 0.92767 0.91662 0.91083 0.91740 0.90833 0.94990 0.93970 0.90913 0.94806 0.91067 0.84336 0.95824 0.91693 0.93941 0.92684 0.94229 0.94082 0.91719 0.94787 0.96906 0.96697 0.93185 0.94915 0.89914 0.91648 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.10 -0.72 2.79 -90.49 -0.25 -0.97 16 3 C -0.11 -0.85 5.38 -26.65 -0.14 -0.99 16 4 C 0.06 0.50 5.42 -3.84 -0.02 0.48 16 5 N -0.54 -5.59 4.80 -234.68 -1.13 -6.71 16 6 C 0.06 0.65 5.53 -3.83 -0.02 0.63 16 7 C 0.05 0.69 4.93 -3.83 -0.02 0.67 16 8 N -0.69 -10.10 5.71 -113.78 -0.65 -10.75 16 9 C 0.07 1.26 4.65 -3.83 -0.02 1.24 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 11 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 12 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 15 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.05 0.47 4.85 -3.83 -0.02 0.45 16 23 C -0.11 -0.94 5.38 -26.64 -0.14 -1.08 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 36 H 0.34 4.75 6.77 -39.29 -0.27 4.49 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 40 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 44 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.86 5.81 -51.93 -0.30 0.56 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -28.90 379.45 -10.81 -39.71 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -10.20 Total: -0.83 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.27 Total: -17.56 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -1.04 Total: -43.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.90 -10.81 -39.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135148822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.711 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds