Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.46903 * 111.00235 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47219 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46947 * 300.00313 * 7 6 5 9 9 C 1.53004 * 109.47179 * 59.99800 * 7 6 5 10 10 C 1.52994 * 109.47074 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.46854 * 179.97438 * 10 7 6 12 12 H 1.08006 * 120.00192 * 0.02562 * 11 10 7 13 13 C 1.37878 * 120.00160 * 179.97438 * 11 10 7 14 14 N 1.31520 * 119.99559 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00289 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47368 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47154 * 120.00368 * 15 13 11 18 18 H 1.48499 * 109.47055 * 239.99847 * 15 13 11 19 19 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 20 20 N 1.46901 * 109.46818 * 65.00620 * 19 2 1 21 21 C 1.48528 * 111.00412 * 52.59954 * 20 19 2 22 22 C 1.54932 * 103.22764 * 159.72006 * 21 20 19 23 23 C 1.54593 * 102.92718 * 322.58899 * 22 21 20 24 24 C 1.47901 * 110.99850 * 170.00033 * 20 19 2 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.00902 * 111.00150 * 56.04186 * 5 4 2 31 31 H 1.08991 * 109.46891 * 299.99685 * 6 5 4 32 32 H 1.09001 * 109.47244 * 59.99987 * 6 5 4 33 33 H 1.08999 * 109.47835 * 60.00008 * 8 7 6 34 34 H 1.09003 * 109.47150 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.46914 * 299.99606 * 8 7 6 36 36 H 1.09001 * 109.46717 * 60.00033 * 9 7 6 37 37 H 1.08995 * 109.46943 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47210 * 300.00451 * 9 7 6 39 39 H 1.08991 * 109.47010 * 299.99707 * 10 7 6 40 40 H 1.09001 * 109.47270 * 60.00098 * 10 7 6 41 41 H 0.97000 * 119.99992 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47069 * 184.99942 * 19 2 1 43 43 H 1.08991 * 109.47625 * 305.00262 * 19 2 1 44 44 H 1.09000 * 110.66772 * 278.16041 * 21 20 19 45 45 H 1.08998 * 110.67010 * 41.28861 * 21 20 19 46 46 H 1.09007 * 110.72548 * 204.22509 * 22 21 20 47 47 H 1.09006 * 110.72623 * 80.94805 * 22 21 20 48 48 H 1.09003 * 110.30885 * 263.04757 * 23 22 21 49 49 H 1.08991 * 110.31468 * 140.86889 * 23 22 21 50 50 H 1.09002 * 109.91776 * 333.50131 * 24 20 19 51 51 H 1.08998 * 109.91738 * 94.60624 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6672 7 6 1.7033 0.1915 4.8892 8 6 2.3124 1.5922 4.8006 9 6 0.1776 0.3005 4.9275 10 6 2.1967 -0.5003 6.1614 11 6 1.7812 0.3059 7.3650 12 1 1.2208 1.2200 7.2354 13 6 2.1156 -0.1241 8.6316 14 7 2.7976 -1.2375 8.7894 15 14 1.5999 0.8747 10.1236 16 1 0.8476 2.0756 9.6794 17 1 0.7345 0.0450 10.9997 18 1 2.8074 1.2974 10.8777 19 6 2.0401 -0.7213 -1.2492 20 7 1.6515 0.0374 -2.4456 21 6 2.0755 1.4567 -2.3368 22 6 2.0778 1.9398 -3.8089 23 6 2.6031 0.7054 -4.5772 24 6 2.3242 -0.4931 -3.6512 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 0.6528 0.1793 2.4752 31 1 1.6920 -1.6245 3.7300 32 1 3.2126 -0.7037 3.6401 33 1 1.9605 2.0849 3.8942 34 1 2.0119 2.1749 5.6714 35 1 3.3993 1.5146 4.7733 36 1 -0.2564 -0.6974 4.9906 37 1 -0.1232 0.8837 5.7978 38 1 -0.1744 0.7931 4.0211 39 1 1.7623 -1.4979 6.2243 40 1 3.2836 -0.5783 6.1344 41 1 3.0331 -1.5399 9.6805 42 1 3.1264 -0.7995 -1.2055 43 1 1.6055 -1.7198 -1.2951 44 1 1.3597 2.0278 -1.7456 45 1 3.0746 1.5280 -1.9071 46 1 2.7507 2.7880 -3.9355 47 1 1.0688 2.1950 -4.1328 48 1 3.6734 0.8009 -4.7601 49 1 2.0664 0.5890 -5.5186 50 1 3.2622 -0.9730 -3.3722 51 1 1.6750 -1.2106 -4.1532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135152755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = -25.553866 kcal Electronic energy + Delta-G solvation = -22873.507444 eV Core-core repulsion = 19806.398325 eV Total energy + Delta-G solvation = -3067.109119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46772 -37.80822 -35.95577 -33.27740 -32.05529 -30.54467 -29.08994 -27.10571 -26.45895 -26.29769 -25.61535 -23.88519 -22.19617 -21.55920 -21.01772 -19.61900 -17.81297 -16.45291 -16.36842 -16.18798 -15.53044 -14.81925 -14.74010 -14.48265 -14.05015 -13.83676 -13.43761 -13.14491 -12.97578 -12.89080 -12.54461 -12.24125 -12.21361 -11.97684 -11.83155 -11.67511 -11.61156 -11.41401 -11.00422 -10.94566 -10.90881 -10.78441 -10.75726 -10.73887 -10.58469 -10.46198 -10.21381 -10.05685 -9.65256 -8.98835 -8.79149 -8.64302 -8.30135 -8.02806 -5.94486 -3.94348 3.33600 3.41390 3.45043 3.71234 4.29152 4.40562 4.48862 4.57770 4.67375 4.87316 4.98201 5.01113 5.08376 5.21594 5.32361 5.41369 5.43255 5.48319 5.51498 5.56396 5.60926 5.70309 5.70427 5.74028 5.78600 5.84773 5.88489 5.94714 5.99987 6.03142 6.25156 6.28911 6.32574 6.39062 6.54705 6.66222 6.69561 6.79665 6.83233 6.85931 7.23970 7.27191 7.29373 7.45766 7.71713 7.75745 7.88644 8.06187 8.50790 9.11315 9.68335 11.17256 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.043948 B = 0.002539 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.963290 B =11023.345728 C =11143.134023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.063 3.937 5 N -0.686 5.686 6 C 0.070 3.930 7 C -0.058 4.058 8 C -0.115 4.115 9 C -0.129 4.129 10 C 0.033 3.967 11 C -0.505 4.505 12 H 0.060 0.940 13 C 0.053 3.947 14 N -0.898 5.898 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.052 3.948 20 N -0.514 5.514 21 C 0.033 3.967 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.034 3.966 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.339 0.661 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.258 0.742 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 2.865 -25.046 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.067 4.067 5 N -0.319 5.319 6 C -0.059 4.059 7 C -0.058 4.058 8 C -0.173 4.173 9 C -0.186 4.186 10 C -0.005 4.005 11 C -0.543 4.543 12 H 0.078 0.922 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.076 4.076 20 N -0.239 5.239 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.094 4.094 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.826 3.116 -24.984 25.244 hybrid contribution 0.173 -0.466 1.136 1.240 sum -1.654 2.650 -23.848 24.052 Atomic orbital electron populations 1.21751 0.94675 1.01541 1.01829 1.21220 0.96681 1.00379 0.92587 0.90129 1.21923 1.00190 0.94575 0.90039 1.60578 1.19820 1.50058 1.01465 1.22098 0.99727 0.94953 0.89086 1.20620 0.94802 0.95782 0.94629 1.21593 0.99397 0.96247 1.00042 1.21771 0.96045 1.00565 1.00243 1.19133 0.96139 0.95200 0.90007 1.21281 1.34199 1.08097 0.90728 0.92234 1.25030 0.95512 0.95132 0.99046 1.69982 1.39617 1.21996 1.22200 0.86603 0.78263 0.80298 0.83244 1.19770 1.21215 1.21173 1.22334 0.97850 0.97818 0.89633 1.64784 1.54498 1.02250 1.02326 1.23253 0.99475 0.89879 0.96847 1.22493 1.01734 0.97259 0.94830 1.22394 1.00977 0.94713 0.98859 1.22874 0.97374 0.97375 0.91776 0.92790 0.91792 0.93275 0.95691 0.91577 0.84132 0.95988 0.91731 0.93907 0.92723 0.94249 0.94128 0.91716 0.94856 0.96931 0.96706 0.93253 0.94670 0.90721 0.89687 0.93620 0.91157 0.90794 0.91654 0.91125 0.93887 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 2 C -0.09 -0.95 2.28 -90.62 -0.21 -1.16 16 3 H 0.08 0.92 6.52 -51.93 -0.34 0.58 16 4 C 0.06 0.79 5.14 -3.83 -0.02 0.77 16 5 N -0.69 -10.12 5.71 -113.78 -0.65 -10.77 16 6 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 7 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 8 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 9 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 10 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 11 C -0.50 -13.92 7.65 -34.44 -0.26 -14.18 16 12 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 13 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 15 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.05 0.51 4.42 -3.82 -0.02 0.49 16 20 N -0.51 -4.79 4.85 -230.46 -1.12 -5.90 16 21 C 0.03 0.29 5.09 -1.90 -0.01 0.28 16 22 C -0.13 -0.89 7.06 -24.87 -0.18 -1.07 16 23 C -0.13 -0.89 6.93 -25.37 -0.18 -1.06 16 24 C 0.03 0.27 6.70 -2.75 -0.02 0.25 16 25 H 0.05 0.58 6.68 -51.93 -0.35 0.24 16 26 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.34 4.84 5.03 -39.29 -0.20 4.64 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 34 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.76 7.56 -51.93 -0.39 0.37 16 45 H 0.05 0.42 8.01 -51.93 -0.42 0.00 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.04 0.34 7.57 -51.93 -0.39 -0.05 16 51 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -29.02 379.97 -10.70 -39.73 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -10.09 Total: -0.35 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.29 Total: -18.84 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.03 Total: -43.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.02 -10.70 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135152755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.172 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds