Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 C 1.53000 * 109.47372 * 239.99709 * 2 1 3 5 5 N 1.46903 * 109.47144 * 65.00173 * 4 2 1 6 6 C 1.46897 * 111.00227 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47487 * 179.97438 * 6 5 4 8 8 C 1.53010 * 109.47033 * 299.99881 * 7 6 5 9 9 C 1.53005 * 109.47172 * 59.99498 * 7 6 5 10 10 C 1.53002 * 109.47593 * 179.97438 * 7 6 5 11 11 C 1.50699 * 109.47039 * 179.97438 * 10 7 6 12 12 H 1.07990 * 120.00456 * 0.02562 * 11 10 7 13 13 C 1.37881 * 119.99579 * 179.97438 * 11 10 7 14 14 N 1.31512 * 119.99779 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00054 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46998 * 89.99774 * 15 13 11 17 17 H 1.48495 * 109.47327 * 209.99677 * 15 13 11 18 18 H 1.48501 * 109.47158 * 329.99859 * 15 13 11 19 19 C 1.52999 * 109.47451 * 119.99329 * 2 1 3 20 20 N 1.46896 * 109.47714 * 184.08428 * 19 2 1 21 21 C 1.48534 * 110.99742 * 58.28394 * 20 19 2 22 22 C 1.54932 * 103.22951 * 159.72306 * 21 20 19 23 23 C 1.54597 * 102.91972 * 322.58855 * 22 21 20 24 24 C 1.47895 * 111.00210 * 175.67970 * 20 19 2 25 25 H 1.09004 * 109.46544 * 184.44456 * 1 2 3 26 26 H 1.09001 * 109.47167 * 304.44374 * 1 2 3 27 27 H 1.09000 * 109.46872 * 64.44797 * 1 2 3 28 28 H 1.09002 * 109.47362 * 304.99883 * 4 2 1 29 29 H 1.08998 * 109.47304 * 184.99781 * 4 2 1 30 30 H 1.00902 * 110.99394 * 303.95371 * 5 4 2 31 31 H 1.09002 * 109.46851 * 299.99647 * 6 5 4 32 32 H 1.09001 * 109.47457 * 59.99196 * 6 5 4 33 33 H 1.08999 * 109.46713 * 59.99415 * 8 7 6 34 34 H 1.08998 * 109.46925 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46623 * 299.99790 * 8 7 6 36 36 H 1.08993 * 109.46831 * 60.00489 * 9 7 6 37 37 H 1.09003 * 109.46963 * 180.02562 * 9 7 6 38 38 H 1.08998 * 109.46890 * 300.00440 * 9 7 6 39 39 H 1.08998 * 109.46495 * 300.00030 * 10 7 6 40 40 H 1.08999 * 109.46726 * 59.99531 * 10 7 6 41 41 H 0.97000 * 119.99886 * 179.97438 * 14 13 11 42 42 H 1.08995 * 109.47249 * 304.09115 * 19 2 1 43 43 H 1.09004 * 109.46636 * 64.08623 * 19 2 1 44 44 H 1.09003 * 110.66541 * 278.15918 * 21 20 19 45 45 H 1.09003 * 110.66974 * 41.28602 * 21 20 19 46 46 H 1.08998 * 110.73170 * 204.22673 * 22 21 20 47 47 H 1.09005 * 110.72511 * 80.94282 * 22 21 20 48 48 H 1.09003 * 110.31134 * 263.03630 * 23 22 21 49 49 H 1.08999 * 110.31109 * 140.87401 * 23 22 21 50 50 H 1.08995 * 109.91927 * 333.51014 * 24 20 19 51 51 H 1.09004 * 109.91636 * 94.61061 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1249 -0.6272 -3.6672 7 6 1.7016 0.1901 -4.8893 8 6 0.1758 0.2989 -4.9265 9 6 2.3107 1.5909 -4.8019 10 6 2.1952 -0.5017 -6.1616 11 6 1.7776 0.3031 -7.3653 12 1 1.2167 1.2168 -7.2359 13 6 2.1126 -0.1267 -8.6318 14 7 1.7487 0.5759 -9.6823 15 14 3.0834 -1.7068 -8.8557 16 1 2.1448 -2.8503 -8.9853 17 1 3.9149 -1.6074 -10.0820 18 1 3.9623 -1.9189 -7.6775 19 6 2.0401 -0.7211 1.2493 20 7 3.5057 -0.6363 1.2997 21 6 3.9570 0.7788 1.3078 22 6 5.3936 0.6896 1.8811 23 6 5.2696 -0.4170 2.9536 24 6 4.0286 -1.2334 2.5476 25 1 -0.3632 -1.0246 0.0796 26 1 -0.3633 0.5812 0.8475 27 1 -0.3633 0.4433 -0.9272 28 1 1.6055 -1.7199 -1.2951 29 1 3.1263 -0.7995 -1.2055 30 1 0.6529 0.1792 -2.4753 31 1 3.2118 -0.7051 -3.6405 32 1 1.6906 -1.6250 -3.7296 33 1 -0.1754 0.7920 -4.0201 34 1 -0.1257 0.8816 -5.7969 35 1 -0.2581 -0.6991 -4.9887 36 1 3.3976 1.5134 -4.7754 37 1 2.0088 2.1734 -5.6724 38 1 1.9594 2.0840 -3.8955 39 1 3.2821 -0.5789 -6.1347 40 1 1.7615 -1.4998 -6.2239 41 1 1.9847 0.2738 -10.5733 42 1 1.6182 -0.2513 2.1377 43 1 1.7377 -1.7677 1.2135 44 1 3.9710 1.1840 0.2960 45 1 3.3209 1.3818 1.9559 46 1 5.6872 1.6359 2.3354 47 1 6.1011 0.3971 1.1052 48 1 5.1253 0.0258 3.9392 49 1 6.1571 -1.0498 2.9487 50 1 3.2736 -1.1760 3.3315 51 1 4.3052 -2.2734 2.3741 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135152772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = -21.648342 kcal Electronic energy + Delta-G solvation = -23177.294750 eV Core-core repulsion = 20110.354987 eV Total energy + Delta-G solvation = -3066.939763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.44225 -37.83092 -36.00760 -33.21832 -32.00469 -30.77639 -29.11546 -27.71128 -26.32463 -26.26104 -25.64068 -23.82806 -21.88054 -21.48107 -21.05269 -19.66839 -17.75777 -16.75544 -16.39979 -16.25014 -15.80876 -14.80635 -14.49618 -14.15521 -14.00053 -13.88004 -13.52090 -13.28237 -13.07112 -12.88297 -12.60656 -12.34068 -12.30326 -12.10577 -11.90908 -11.75434 -11.60234 -11.37368 -11.04713 -11.01689 -10.94313 -10.82991 -10.79536 -10.74361 -10.58841 -10.42901 -10.23548 -9.75151 -9.61685 -9.21603 -8.84276 -8.61367 -8.45568 -8.01423 -5.96071 -3.91795 3.35457 3.43111 3.47652 3.75107 4.32390 4.41545 4.52329 4.52707 4.66844 4.87364 4.95832 5.01222 5.05728 5.23560 5.29159 5.37329 5.42262 5.48843 5.50857 5.54627 5.58392 5.65535 5.67858 5.74685 5.79883 5.81773 5.88711 5.92796 5.95304 6.00537 6.20371 6.25666 6.28072 6.35985 6.49792 6.65648 6.67846 6.75837 6.83499 6.86218 7.14414 7.20349 7.25812 7.39406 7.43698 7.53816 7.76989 7.90452 8.64482 9.10195 9.67417 11.17126 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.003160 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.462945 B = 8858.539811 C = 9343.022419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.080 0.920 4 C 0.069 3.931 5 N -0.688 5.688 6 C 0.069 3.931 7 C -0.049 4.049 8 C -0.130 4.130 9 C -0.116 4.116 10 C -0.005 4.005 11 C -0.505 4.505 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.907 5.907 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.054 3.946 20 N -0.514 5.514 21 C 0.034 3.966 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.035 3.965 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.335 0.665 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.015 0.985 40 H 0.007 0.993 41 H 0.261 0.739 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.041 0.959 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -1.907 26.415 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.060 4.060 5 N -0.320 5.320 6 C -0.060 4.060 7 C -0.049 4.049 8 C -0.187 4.187 9 C -0.174 4.174 10 C -0.043 4.043 11 C -0.543 4.543 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.547 5.547 15 Si 0.703 3.297 16 H -0.206 1.206 17 H -0.216 1.216 18 H -0.191 1.191 19 C -0.075 4.075 20 N -0.239 5.239 21 C -0.094 4.094 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.093 4.093 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.059 0.941 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.962 -1.773 25.802 26.032 hybrid contribution -0.479 -1.347 0.385 1.481 sum 2.483 -3.120 26.187 26.489 Atomic orbital electron populations 1.21842 0.95297 1.01570 1.02055 1.21194 0.95164 1.00503 0.93880 0.90150 1.21900 1.01456 0.93709 0.88947 1.60607 1.19517 1.50260 1.01630 1.22091 0.99783 0.94779 0.89315 1.20416 0.95089 0.95879 0.93541 1.21779 0.95640 1.00628 1.00688 1.21597 0.99287 0.95993 1.00481 1.19631 0.95951 0.95499 0.93171 1.21151 1.34822 1.09413 0.88945 0.90437 1.25019 0.95720 0.96754 0.96146 1.69912 1.47427 1.39117 0.98207 0.86848 0.80745 0.84476 0.77611 1.20551 1.21582 1.19083 1.22338 0.87330 1.00919 0.96914 1.64770 1.10017 1.14306 1.34759 1.23265 0.94970 0.89561 1.01591 1.22490 0.97205 0.98355 0.98256 1.22392 0.98203 0.97618 0.98716 1.22853 0.96089 0.99609 0.90770 0.92932 0.92909 0.91838 0.96242 0.90014 0.84469 0.91671 0.96182 0.94670 0.91228 0.94230 0.94256 0.92263 0.93705 0.96707 0.97455 0.92940 0.94815 0.90844 0.89263 0.93987 0.91195 0.90594 0.91767 0.91079 0.94094 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.06 37.16 0.34 -1.05 16 2 C -0.09 -0.90 2.40 -90.62 -0.22 -1.12 16 3 H 0.08 0.89 6.68 -51.93 -0.35 0.54 16 4 C 0.07 0.87 5.08 -3.82 -0.02 0.85 16 5 N -0.69 -9.89 5.71 -113.78 -0.65 -10.54 16 6 C 0.07 1.18 4.65 -3.83 -0.02 1.16 16 7 C -0.05 -0.96 0.60 -154.50 -0.09 -1.06 16 8 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 9 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 10 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 11 C -0.51 -14.14 8.20 -34.44 -0.28 -14.42 16 12 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 15 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 19 C 0.05 0.50 4.24 -3.83 -0.02 0.48 16 20 N -0.51 -5.02 4.68 -230.46 -1.08 -6.10 16 21 C 0.03 0.31 5.33 -1.90 -0.01 0.30 16 22 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16 23 C -0.13 -0.94 6.93 -25.37 -0.18 -1.12 16 24 C 0.03 0.29 6.70 -2.76 -0.02 0.27 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 1.13 7.59 -51.93 -0.39 0.73 16 30 H 0.34 4.65 4.94 -39.29 -0.19 4.45 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 34 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.92 7.56 -51.93 -0.39 0.53 16 45 H 0.04 0.37 8.02 -51.93 -0.42 -0.05 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.31 7.66 -51.93 -0.40 -0.08 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -29.58 376.54 -10.29 -39.87 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -10.06 Total: 0.42 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.28 Total: -19.43 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.96 Total: -43.96 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.58 -10.29 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135152772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds