Wall clock time and date at job start Tue Mar 31 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47021 * 2 1 4 4 C 1.53000 * 109.47264 * 120.00255 * 2 1 3 5 5 N 1.46903 * 109.46890 * 66.05675 * 4 2 1 6 6 C 1.46896 * 110.99622 * 183.63956 * 5 4 2 7 7 C 1.53004 * 109.46912 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47230 * 299.99819 * 7 6 5 9 9 C 1.53001 * 109.46880 * 60.00418 * 7 6 5 10 10 C 1.53009 * 109.46741 * 179.97438 * 7 6 5 11 11 C 1.50707 * 109.46534 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00122 * 359.97438 * 11 10 7 13 13 C 1.37881 * 119.99539 * 180.02562 * 11 10 7 14 14 N 1.31509 * 120.00026 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99855 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47153 * 59.99813 * 15 13 11 17 17 H 1.48496 * 109.47260 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47111 * 299.99999 * 15 13 11 19 19 N 1.46900 * 109.47052 * 240.00493 * 2 1 3 20 20 C 1.46847 * 111.00442 * 62.32240 * 19 2 1 21 21 C 1.53034 * 109.52875 * 185.84155 * 20 19 2 22 22 C 1.53128 * 109.27615 * 300.82403 * 21 20 19 23 23 C 1.53118 * 109.21425 * 57.61763 * 22 21 20 24 24 C 1.46850 * 111.00048 * 186.53492 * 19 2 1 25 25 H 1.08997 * 109.47132 * 299.99549 * 1 2 3 26 26 H 1.09001 * 109.47065 * 59.99735 * 1 2 3 27 27 H 1.09006 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47079 * 186.05488 * 4 2 1 29 29 H 1.08995 * 109.46948 * 306.05615 * 4 2 1 30 30 H 1.00900 * 111.00097 * 307.59222 * 5 4 2 31 31 H 1.09004 * 109.47300 * 299.99974 * 6 5 4 32 32 H 1.09005 * 109.47546 * 60.00380 * 6 5 4 33 33 H 1.09004 * 109.46883 * 60.00155 * 8 7 6 34 34 H 1.09002 * 109.46980 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.47121 * 300.00192 * 8 7 6 36 36 H 1.08994 * 109.47271 * 59.99896 * 9 7 6 37 37 H 1.09005 * 109.46631 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47000 * 299.99702 * 9 7 6 39 39 H 1.08992 * 109.47461 * 299.99692 * 10 7 6 40 40 H 1.09003 * 109.47030 * 60.00498 * 10 7 6 41 41 H 0.96997 * 120.00017 * 179.97438 * 14 13 11 42 42 H 1.09005 * 109.46154 * 65.82226 * 20 19 2 43 43 H 1.09007 * 109.45534 * 305.85459 * 20 19 2 44 44 H 1.08999 * 109.50680 * 180.88110 * 21 20 19 45 45 H 1.08999 * 109.50429 * 60.75951 * 21 20 19 46 46 H 1.08997 * 109.52097 * 177.56153 * 22 21 20 47 47 H 1.09003 * 109.51993 * 297.68537 * 22 21 20 48 48 H 1.09000 * 109.49795 * 62.32295 * 23 22 21 49 49 H 1.08992 * 109.50161 * 182.43979 * 23 22 21 50 50 H 1.08998 * 109.46205 * 294.17430 * 24 19 2 51 51 H 1.08996 * 109.46066 * 54.15204 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6734 -2.1421 1.1783 6 6 2.0717 -2.8502 2.4021 7 6 1.6735 -4.3234 2.2913 8 6 0.1580 -4.4299 2.1108 9 6 2.3762 -4.9523 1.0866 10 6 2.0890 -5.0611 3.5658 11 6 1.6974 -6.5123 3.4564 12 1 1.2014 -6.8722 2.5672 13 6 1.9713 -7.3801 4.4922 14 7 2.5748 -6.9417 5.5753 15 14 1.4866 -9.1790 4.3564 16 1 2.1696 -9.7888 3.1872 17 1 1.8886 -9.8948 5.5939 18 1 0.0157 -9.2834 4.1804 19 7 2.0197 -0.6924 -1.1995 20 6 1.5948 0.0048 -2.4200 21 6 1.9959 -0.8190 -3.6457 22 6 3.5148 -1.0135 -3.6491 23 6 3.9381 -1.6972 -2.3461 24 6 3.4793 -0.8486 -1.1580 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1246 -0.6284 1.3050 29 1 1.5909 -0.2739 2.1358 30 1 0.6861 -2.2523 1.0017 31 1 3.1514 -2.7739 2.5310 32 1 1.5707 -2.4024 3.2604 33 1 -0.1376 -3.9044 1.2027 34 1 -0.1257 -5.4795 2.0324 35 1 -0.3426 -3.9818 2.9691 36 1 3.4559 -4.8764 1.2152 37 1 2.0922 -6.0018 1.0074 38 1 2.0807 -4.4269 0.1784 39 1 3.1687 -4.9852 3.6940 40 1 1.5887 -4.6131 4.4244 41 1 2.7672 -7.5521 6.3041 42 1 2.0755 0.9821 -2.4661 43 1 0.5123 0.1329 -2.4069 44 1 1.6943 -0.2937 -4.5519 45 1 1.5047 -1.7912 -3.6074 46 1 3.8003 -1.6362 -4.4968 47 1 4.0060 -0.0436 -3.7278 48 1 3.4783 -2.6837 -2.2868 49 1 5.0231 -1.7989 -2.3244 50 1 3.9512 0.1326 -1.2100 51 1 3.7656 -1.3405 -0.2285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135159448.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:51 Heat of formation + Delta-G solvation = -21.803908 kcal Electronic energy + Delta-G solvation = -23887.083866 eV Core-core repulsion = 20820.137357 eV Total energy + Delta-G solvation = -3066.946509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.46595 -37.49470 -35.52335 -33.11957 -31.92584 -30.96553 -29.81587 -27.10103 -26.26513 -26.21221 -24.64357 -23.85785 -22.66170 -22.11199 -20.15756 -19.49436 -17.79078 -16.67192 -16.18809 -15.40363 -14.97801 -14.82863 -14.47663 -14.34377 -13.93482 -13.70654 -13.49261 -13.39011 -13.03967 -12.92641 -12.64154 -12.30509 -12.03016 -11.92954 -11.79688 -11.52604 -11.28060 -11.20010 -11.09453 -10.89038 -10.79023 -10.72645 -10.70586 -10.40843 -10.29435 -10.16241 -10.12488 -10.03400 -9.58889 -8.92848 -8.76361 -8.26529 -8.17000 -7.84160 -5.91341 -3.91061 3.38117 3.42441 3.44992 3.83159 4.51027 4.63566 4.72633 4.78083 4.87038 4.98028 5.00446 5.23067 5.31052 5.39114 5.42887 5.44454 5.53406 5.61905 5.65897 5.67851 5.77199 5.80670 5.83984 5.88585 5.93452 5.94299 5.96196 6.08706 6.11491 6.20117 6.25730 6.35298 6.40040 6.44842 6.61633 6.79314 6.89894 6.92726 7.15936 7.22946 7.30119 7.36583 7.37432 7.57021 7.76221 7.87599 7.94745 8.09648 8.54696 9.14389 9.71402 11.20408 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.003593 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.352390 B = 7790.788133 C = 8226.915670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 H 0.036 0.964 4 C 0.061 3.939 5 N -0.666 5.666 6 C 0.069 3.931 7 C -0.056 4.056 8 C -0.128 4.128 9 C -0.114 4.114 10 C 0.034 3.966 11 C -0.505 4.505 12 H 0.058 0.942 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 N -0.510 5.510 20 C 0.052 3.948 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.115 4.115 24 C 0.060 3.940 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.340 0.660 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.259 0.741 42 H 0.023 0.977 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.018 0.982 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 16.078 -15.516 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.069 4.069 5 N -0.299 5.299 6 C -0.060 4.060 7 C -0.056 4.056 8 C -0.185 4.185 9 C -0.171 4.171 10 C -0.003 4.003 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 N -0.235 5.235 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.068 4.068 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.036 0.964 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.792 15.379 -15.690 21.985 hybrid contribution -0.462 0.197 0.806 0.949 sum -1.254 15.576 -14.884 21.581 Atomic orbital electron populations 1.21903 0.94623 1.02838 1.01260 1.21641 0.95536 0.94624 0.90653 0.94620 1.22020 1.00346 0.89938 0.94554 1.60490 1.23539 1.08733 1.37177 1.22113 0.99825 0.95077 0.88988 1.20590 0.94613 0.91905 0.98533 1.21755 0.96182 1.02013 0.98563 1.21572 0.98912 0.99980 0.96640 1.19119 0.96288 0.94435 0.90506 1.21222 1.37519 0.93846 1.01787 0.92357 1.25011 0.95566 0.98440 0.95576 1.69956 1.42414 1.35122 1.06409 0.86738 0.78882 0.85631 0.77218 1.20310 1.21492 1.20382 1.61798 1.11766 1.49609 1.00340 1.22148 1.00342 0.94628 0.90516 1.21553 0.96157 1.01046 0.96502 1.21578 0.95999 1.00175 0.98066 1.21550 0.99942 1.00222 0.93565 1.22080 0.86994 0.97596 1.00097 0.92546 0.92642 0.91253 0.91395 0.95463 0.83977 0.91970 0.96393 0.94697 0.91896 0.94330 0.94440 0.93033 0.93464 0.96803 0.97079 0.93174 0.95886 0.90814 0.92210 0.90917 0.92196 0.92887 0.90566 0.92066 0.96415 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.83 37.16 0.33 -1.13 16 2 C 0.08 0.90 2.44 -67.71 -0.17 0.74 16 3 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 4 C 0.06 0.76 4.62 -3.82 -0.02 0.74 16 5 N -0.67 -9.62 5.33 -113.78 -0.61 -10.23 16 6 C 0.07 1.20 4.64 -3.82 -0.02 1.18 16 7 C -0.06 -1.13 0.60 -154.50 -0.09 -1.22 16 8 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 9 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 10 C 0.03 0.87 4.04 -27.87 -0.11 0.76 16 11 C -0.51 -14.00 7.65 -34.44 -0.26 -14.27 16 12 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 N -0.51 -5.71 4.23 -226.68 -0.96 -6.67 16 20 C 0.05 0.50 5.26 -3.84 -0.02 0.48 16 21 C -0.11 -1.05 6.10 -26.65 -0.16 -1.22 16 22 C -0.12 -1.11 6.00 -26.60 -0.16 -1.27 16 23 C -0.11 -1.22 6.10 -26.65 -0.16 -1.39 16 24 C 0.06 0.68 5.08 -3.83 -0.02 0.66 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.49 6.33 -51.93 -0.33 0.16 16 27 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 28 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.34 4.90 4.96 -39.29 -0.20 4.70 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 34 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 38 H 0.05 0.85 7.60 -51.93 -0.39 0.46 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.68 6.08 -51.93 -0.32 0.37 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 51 H 0.09 1.15 5.91 -51.93 -0.31 0.85 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -28.76 372.77 -10.48 -39.24 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.88 Total: 0.22 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.37 Total: -18.54 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.83 Total: -43.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.76 -10.48 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135159448.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.436 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds