Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46883 * 240.00210 * 2 1 3 5 5 N 1.46899 * 109.46855 * 185.00052 * 4 2 1 6 6 C 1.46901 * 111.00232 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47514 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47106 * 300.00479 * 7 6 5 9 9 C 1.53004 * 109.46987 * 59.99945 * 7 6 5 10 10 C 1.52997 * 109.47401 * 180.02562 * 7 6 5 11 11 C 1.50699 * 109.47375 * 180.02562 * 10 7 6 12 12 H 1.08000 * 119.99985 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00117 * 180.02562 * 11 10 7 14 14 N 1.31510 * 120.00044 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47017 * 89.99783 * 15 13 11 17 17 H 1.48503 * 109.47338 * 209.99997 * 15 13 11 18 18 H 1.48500 * 109.47064 * 330.00229 * 15 13 11 19 19 N 1.46895 * 109.46869 * 120.00073 * 2 1 3 20 20 C 1.46847 * 110.99982 * 299.99633 * 19 2 1 21 21 C 1.53034 * 109.51345 * 185.84805 * 20 19 2 22 22 C 1.53123 * 109.27992 * 300.80438 * 21 20 19 23 23 C 1.53127 * 109.15019 * 57.67185 * 22 21 20 24 24 C 1.46843 * 110.99970 * 64.20998 * 19 2 1 25 25 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47359 * 300.00563 * 1 2 3 27 27 H 1.09002 * 109.46852 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.46926 * 304.99547 * 4 2 1 29 29 H 1.08997 * 109.47826 * 65.00084 * 4 2 1 30 30 H 1.00898 * 111.00455 * 303.95292 * 5 4 2 31 31 H 1.09004 * 109.46866 * 300.00046 * 6 5 4 32 32 H 1.09003 * 109.47106 * 60.00011 * 6 5 4 33 33 H 1.09002 * 109.47608 * 59.99453 * 8 7 6 34 34 H 1.09003 * 109.47518 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46780 * 299.99510 * 8 7 6 36 36 H 1.09004 * 109.47211 * 60.00035 * 9 7 6 37 37 H 1.09003 * 109.47237 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.47247 * 300.00470 * 9 7 6 39 39 H 1.09004 * 109.46823 * 299.99980 * 10 7 6 40 40 H 1.08995 * 109.46981 * 60.00088 * 10 7 6 41 41 H 0.97000 * 120.00447 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.46481 * 305.85957 * 20 19 2 43 43 H 1.08994 * 109.46283 * 65.83811 * 20 19 2 44 44 H 1.08997 * 109.50952 * 60.75924 * 21 20 19 45 45 H 1.08998 * 109.50459 * 180.87821 * 21 20 19 46 46 H 1.09003 * 109.53012 * 297.76758 * 22 21 20 47 47 H 1.08997 * 109.57453 * 177.60035 * 22 21 20 48 48 H 1.08997 * 109.49981 * 182.39822 * 23 22 21 49 49 H 1.08998 * 109.53089 * 62.30397 * 23 22 21 50 50 H 1.08993 * 109.46313 * 294.17341 * 24 19 2 51 51 H 1.09000 * 109.46480 * 54.15451 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0303 -1.5158 -2.3762 7 6 5.5546 -1.6057 -2.2794 8 6 6.1448 -0.1961 -2.2048 9 6 5.9405 -2.3873 -1.0219 10 6 6.1028 -2.3229 -3.5146 11 6 7.6041 -2.4119 -3.4189 12 1 8.1161 -1.9979 -2.5629 13 6 8.3241 -3.0210 -4.4247 14 7 7.7006 -3.5246 -5.4674 15 14 10.1851 -3.1307 -4.3064 16 1 10.5637 -4.3882 -3.6132 17 1 10.7692 -3.1229 -5.6717 18 1 10.7017 -1.9682 -3.5403 19 7 2.0196 -0.6925 1.1994 20 6 1.5488 -0.0266 2.4206 21 6 2.1938 -0.6843 3.6426 22 6 1.8215 -2.1693 3.6730 23 6 2.2800 -2.8288 2.3693 24 6 1.6326 -2.1089 1.1840 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 -1.2952 29 1 1.7517 -0.1583 -2.1370 30 1 3.9280 0.0825 -1.0824 31 1 3.6094 -2.5199 -2.4295 32 1 3.7557 -0.9588 -3.2720 33 1 5.7543 0.3153 -1.3249 34 1 7.2308 -0.2600 -2.1362 35 1 5.8699 0.3607 -3.1006 36 1 5.5200 -3.3915 -1.0750 37 1 7.0265 -2.4509 -0.9526 38 1 5.5500 -1.8760 -0.1421 39 1 5.6823 -3.3271 -3.5681 40 1 5.8278 -1.7657 -4.4101 41 1 8.2072 -3.9528 -6.1752 42 1 1.8234 1.0278 2.3883 43 1 0.4648 -0.1175 2.4890 44 1 3.2772 -0.5818 3.5818 45 1 1.8323 -0.2001 4.5498 46 1 0.7410 -2.2721 3.7729 47 1 2.3130 -2.6517 4.5178 48 1 1.9800 -3.8767 2.3667 49 1 3.3648 -2.7606 2.2883 50 1 0.5483 -2.1900 1.2581 51 1 1.9684 -2.5671 0.2537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135159470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = -22.932185 kcal Electronic energy + Delta-G solvation = -23797.452969 eV Core-core repulsion = 20730.457534 eV Total energy + Delta-G solvation = -3066.995435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58424 -37.47159 -35.44777 -33.25731 -31.94285 -30.82705 -29.78186 -27.09606 -26.30469 -26.16668 -24.50620 -23.90965 -22.95695 -21.92951 -20.65390 -19.17349 -17.73095 -16.60480 -16.14936 -15.23948 -14.87995 -14.75233 -14.61996 -14.35424 -14.22617 -13.98778 -13.48287 -13.30634 -12.92629 -12.77370 -12.56330 -12.28600 -12.12222 -11.96450 -11.94002 -11.73187 -11.40182 -11.24707 -10.91012 -10.80406 -10.76770 -10.73171 -10.69194 -10.41223 -10.35003 -10.19440 -10.16116 -10.02777 -9.58489 -8.92632 -8.75450 -8.26683 -8.12004 -7.83919 -5.91367 -3.90988 3.36829 3.43124 3.46236 3.86989 4.47168 4.56080 4.73721 4.78081 4.90973 4.92818 5.07188 5.24157 5.27950 5.32634 5.44539 5.46700 5.52003 5.54119 5.60680 5.65853 5.70881 5.76640 5.82543 5.87949 5.90885 5.92959 5.97228 6.08682 6.12178 6.13444 6.24612 6.35563 6.39955 6.45153 6.62133 6.80082 6.90655 6.93462 7.16960 7.23143 7.30738 7.36925 7.37811 7.57074 7.76495 7.86842 7.94589 8.09732 8.54898 9.14692 9.71558 11.20415 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.003519 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.324211 B = 7954.599735 C = 8454.853198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.078 0.922 4 C 0.064 3.936 5 N -0.667 5.667 6 C 0.070 3.930 7 C -0.056 4.056 8 C -0.128 4.128 9 C -0.114 4.114 10 C 0.033 3.967 11 C -0.504 4.504 12 H 0.059 0.941 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 N -0.507 5.507 20 C 0.053 3.947 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.116 4.116 24 C 0.058 3.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.338 0.662 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.258 0.742 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.022 0.978 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 6.593 15.281 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.066 4.066 5 N -0.298 5.298 6 C -0.059 4.059 7 C -0.056 4.056 8 C -0.185 4.185 9 C -0.171 4.171 10 C -0.004 4.004 11 C -0.543 4.543 12 H 0.077 0.923 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.199 1.199 19 N -0.230 5.230 20 C -0.075 4.075 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.040 0.960 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.884 5.957 15.497 22.297 hybrid contribution -0.063 0.498 -0.865 1.000 sum -14.947 6.454 14.632 21.890 Atomic orbital electron populations 1.22455 0.97904 1.02192 1.02061 1.21718 0.91835 0.98207 0.90704 0.90376 1.22022 0.90473 0.99694 0.94458 1.60424 1.02873 1.25621 1.40928 1.22099 0.96626 0.97844 0.89303 1.20587 0.91069 0.95626 0.98360 1.21756 1.01922 0.96155 0.98689 1.21570 1.00653 0.98509 0.96357 1.19123 0.95541 0.94859 0.90880 1.21258 0.92029 1.36064 1.04925 0.92300 1.25013 0.98097 0.95916 0.95604 1.69967 1.35283 1.39248 1.09402 0.86677 0.86326 0.78389 0.77101 1.20802 1.21450 1.19939 1.62003 1.58911 1.01789 1.00320 1.22093 0.96673 0.98226 0.90492 1.21559 1.01816 0.95385 0.96559 1.21571 1.00260 0.95916 0.98018 1.21562 1.02067 0.98105 0.93641 1.22080 0.96288 0.88748 0.99844 0.92380 0.92441 0.92200 0.91339 0.95610 0.84268 0.91988 0.96416 0.94628 0.91909 0.94348 0.94463 0.93054 0.93419 0.96814 0.97068 0.93237 0.91321 0.95378 0.90918 0.92222 0.92888 0.92199 0.92133 0.90578 0.95978 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 8.50 37.16 0.32 -1.36 16 2 C 0.08 0.89 2.65 -67.71 -0.18 0.71 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.06 0.78 4.52 -3.82 -0.02 0.76 16 5 N -0.67 -9.65 5.44 -113.78 -0.62 -10.27 16 6 C 0.07 1.22 4.65 -3.82 -0.02 1.21 16 7 C -0.06 -1.13 0.60 -154.51 -0.09 -1.23 16 8 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 9 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 10 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 11 C -0.50 -13.99 7.65 -34.44 -0.26 -14.26 16 12 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 N -0.51 -5.61 4.41 -226.70 -1.00 -6.61 16 20 C 0.05 0.51 4.89 -3.84 -0.02 0.49 16 21 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 22 C -0.12 -1.10 6.00 -26.60 -0.16 -1.26 16 23 C -0.12 -1.23 6.09 -26.64 -0.16 -1.39 16 24 C 0.06 0.65 4.67 -3.83 -0.02 0.63 16 25 H 0.06 0.54 6.63 -51.93 -0.34 0.20 16 26 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.86 6.51 -51.93 -0.34 0.53 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.34 4.88 6.77 -39.29 -0.27 4.61 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 34 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.09 6.62 -51.93 -0.34 0.74 16 38 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.03 0.26 6.63 -51.93 -0.34 -0.08 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.02 0.24 6.71 -51.93 -0.35 -0.11 16 51 H 0.09 1.10 6.01 -51.93 -0.31 0.78 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -28.81 373.23 -10.58 -39.39 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -9.91 Total: 0.31 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.39 Total: -18.81 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.88 Total: -43.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.81 -10.58 -39.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135159470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.461 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds