Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 N 1.46905 * 109.47064 * 120.00296 * 2 1 3 5 5 C 1.47893 * 111.00002 * 176.22853 * 4 2 1 6 6 C 1.53995 * 107.05802 * 214.15108 * 5 4 2 7 7 C 1.54596 * 105.13729 * 1.22478 * 6 5 4 8 8 H 1.08997 * 110.71976 * 263.59673 * 7 6 5 9 9 C 1.52998 * 110.72154 * 140.49491 * 7 6 5 10 10 N 1.46901 * 109.47401 * 66.45396 * 9 7 6 11 11 C 1.46897 * 111.00201 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47267 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47019 * 299.99906 * 12 11 10 14 14 C 1.52995 * 109.46936 * 60.00280 * 12 11 10 15 15 C 1.53004 * 109.46953 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.46775 * 180.02562 * 15 12 11 17 17 H 1.07996 * 120.00214 * 359.97438 * 16 15 12 18 18 C 1.37878 * 119.99880 * 180.02562 * 16 15 12 19 19 N 1.31510 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99777 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46950 * 90.00346 * 20 18 16 22 22 H 1.48505 * 109.47045 * 209.99967 * 20 18 16 23 23 H 1.48498 * 109.47453 * 330.00367 * 20 18 16 24 24 C 1.48533 * 111.00202 * 58.82566 * 4 2 1 25 25 H 1.08994 * 109.47004 * 54.23094 * 1 2 3 26 26 H 1.08999 * 109.47025 * 174.22417 * 1 2 3 27 27 H 1.08991 * 109.47055 * 294.22540 * 1 2 3 28 28 H 1.09003 * 109.46933 * 239.99594 * 2 1 3 29 29 H 1.09005 * 109.46841 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47175 * 299.99562 * 3 2 1 31 31 H 1.08997 * 109.47216 * 59.99781 * 3 2 1 32 32 H 1.09006 * 109.92001 * 333.50390 * 5 4 2 33 33 H 1.09006 * 109.92135 * 94.79592 * 5 4 2 34 34 H 1.09000 * 110.31087 * 120.13984 * 6 5 4 35 35 H 1.08997 * 110.30700 * 242.20967 * 6 5 4 36 36 H 1.09005 * 109.46853 * 186.45195 * 9 7 6 37 37 H 1.08998 * 109.47235 * 306.44996 * 9 7 6 38 38 H 1.00899 * 111.00168 * 56.04448 * 10 9 7 39 39 H 1.08998 * 109.47581 * 300.00309 * 11 10 9 40 40 H 1.09004 * 109.47226 * 59.99615 * 11 10 9 41 41 H 1.09002 * 109.47518 * 60.00048 * 13 12 11 42 42 H 1.08994 * 109.47240 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47497 * 300.00093 * 13 12 11 44 44 H 1.09000 * 109.47443 * 59.99795 * 14 12 11 45 45 H 1.09004 * 109.46864 * 179.97438 * 14 12 11 46 46 H 1.09005 * 109.47124 * 299.99788 * 14 12 11 47 47 H 1.09000 * 109.46952 * 299.99914 * 15 12 11 48 48 H 1.08999 * 109.47175 * 60.00145 * 15 12 11 49 49 H 0.97007 * 119.99642 * 179.97438 * 19 18 16 50 50 H 1.08999 * 110.66899 * 278.15922 * 24 4 2 51 51 H 1.09002 * 110.66653 * 41.29363 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4953 -0.7915 1.1891 6 6 3.8631 -2.1289 1.8580 7 6 2.5106 -2.7872 2.2148 8 1 2.2445 -2.5839 3.2521 9 6 2.5570 -4.2943 1.9552 10 7 3.5023 -4.9230 2.8874 11 6 3.5727 -6.3737 2.6674 12 6 4.5654 -6.9917 3.6541 13 6 5.9491 -6.3755 3.4385 14 6 4.1011 -6.7149 5.0854 15 6 4.6391 -8.5026 3.4244 16 6 5.6165 -9.1113 4.3967 17 1 6.1337 -8.4833 5.1070 18 6 5.8512 -10.4698 4.3787 19 7 6.7038 -11.0011 5.2274 20 14 4.9572 -11.5559 3.1496 21 1 5.7562 -11.6525 1.9015 22 1 4.7758 -12.9118 3.7273 23 1 3.6291 -10.9668 2.8427 24 6 1.5204 -2.0906 1.2480 25 1 -0.3633 0.6007 -0.8338 26 1 -0.3633 -1.0224 -0.1034 27 1 -0.3633 0.4216 0.9371 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.8613 -0.7768 0.1624 33 1 3.9270 0.0363 1.7518 34 1 4.4191 -2.7589 1.1637 35 1 4.4492 -1.9522 2.7599 36 1 1.5641 -4.7192 2.1031 37 1 2.8813 -4.4768 0.9307 38 1 3.2597 -4.7141 3.8443 39 1 2.5868 -6.8127 2.8204 40 1 3.9038 -6.5709 1.6478 41 1 5.8970 -5.2990 3.6018 42 1 6.6565 -6.8160 4.1411 43 1 6.2799 -6.5727 2.4188 44 1 3.1153 -7.1539 5.2389 45 1 4.8082 -7.1556 5.7883 46 1 4.0489 -5.6384 5.2487 47 1 3.6534 -8.9418 3.5776 48 1 4.9701 -8.6994 2.4047 49 1 6.8686 -11.9570 5.2150 50 1 0.5064 -2.1234 1.6465 51 1 1.5615 -2.5484 0.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135166763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -21.490963 kcal Electronic energy + Delta-G solvation = -22943.899087 eV Core-core repulsion = 19876.966148 eV Total energy + Delta-G solvation = -3066.932939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65845 -37.75084 -35.59059 -33.63142 -32.12954 -29.94854 -29.41981 -27.68053 -27.21945 -26.35852 -25.60059 -23.63140 -22.24959 -21.71277 -20.48929 -19.92524 -17.79283 -16.79680 -16.64214 -15.86921 -15.30828 -15.13074 -14.48032 -14.24875 -14.08015 -13.77896 -13.52385 -13.34314 -12.98019 -12.86674 -12.57880 -12.53926 -12.39741 -12.25291 -11.99240 -11.78364 -11.49582 -11.26579 -11.16013 -11.09023 -11.02358 -10.96846 -10.87685 -10.74229 -10.59090 -10.48232 -10.32316 -9.77179 -9.67253 -9.26306 -8.88558 -8.65087 -8.48690 -8.12544 -5.98910 -3.94866 3.32711 3.40296 3.43731 3.66734 4.21968 4.49149 4.49193 4.63621 4.70957 4.78696 4.93639 5.02765 5.09055 5.26441 5.33541 5.34157 5.38095 5.43991 5.48350 5.51134 5.54591 5.58604 5.63883 5.67906 5.70176 5.83360 5.85484 5.89761 5.90512 5.97729 6.13427 6.17431 6.23870 6.27342 6.43974 6.61632 6.68746 6.71661 6.81612 6.85478 7.09599 7.15420 7.21489 7.32293 7.34979 7.48095 7.65620 7.86836 8.61193 9.07221 9.64305 11.14206 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.002702 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.440371 B =10361.681087 C =10644.004825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 C -0.144 4.144 4 N -0.513 5.513 5 C 0.034 3.966 6 C -0.113 4.113 7 C -0.087 4.087 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.683 5.683 11 C 0.068 3.932 12 C -0.048 4.048 13 C -0.117 4.117 14 C -0.130 4.130 15 C -0.005 4.005 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.042 3.958 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.339 0.661 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.036 0.964 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.261 0.739 50 H 0.079 0.921 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 22.183 -10.027 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 C -0.201 4.201 4 N -0.238 5.238 5 C -0.094 4.094 6 C -0.151 4.151 7 C -0.106 4.106 8 H 0.098 0.902 9 C -0.063 4.063 10 N -0.315 5.315 11 C -0.061 4.061 12 C -0.048 4.048 13 C -0.174 4.174 14 C -0.188 4.188 15 C -0.043 4.043 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.704 3.296 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.086 4.086 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.867 22.469 -9.935 26.863 hybrid contribution -1.008 -1.558 -1.076 2.145 sum -11.875 20.911 -11.011 26.448 Atomic orbital electron populations 1.21856 0.94310 1.01835 1.02311 1.21809 0.95814 0.95428 0.91143 1.21828 1.01054 0.95200 1.02031 1.64821 1.07006 1.14691 1.37308 1.22915 0.88229 0.98774 0.99456 1.22312 0.97108 0.94469 1.01193 1.22049 0.94922 0.93911 0.99749 0.90154 1.21924 0.93990 0.92743 0.97661 1.60522 1.51434 1.11337 1.08183 1.22124 0.97816 0.85963 1.00180 1.20406 0.94317 0.96719 0.93406 1.21606 0.96267 0.98749 1.00815 1.21778 1.00941 0.98547 0.97508 1.19636 0.96991 0.90843 0.96805 1.21139 1.23023 0.92754 1.17470 0.90412 1.25024 0.94972 0.98152 0.95519 1.69912 1.35520 1.11997 1.37115 0.86846 0.80962 0.79950 0.81875 1.20469 1.21589 1.19211 1.23202 0.99093 0.88003 0.98346 0.92315 0.92755 0.91684 0.94260 0.92686 0.92416 0.91791 0.94088 0.90608 0.90976 0.90811 0.95652 0.91422 0.84148 0.96010 0.91765 0.93625 0.92188 0.94333 0.94198 0.91186 0.94522 0.96988 0.97210 0.92911 0.90224 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.87 37.16 0.33 -0.71 16 2 C 0.07 0.54 2.37 -67.71 -0.16 0.38 16 3 C -0.14 -1.02 9.16 37.16 0.34 -0.68 16 4 N -0.51 -4.83 5.11 -222.50 -1.14 -5.97 16 5 C 0.03 0.32 5.50 -2.76 -0.02 0.30 16 6 C -0.11 -1.14 6.33 -25.37 -0.16 -1.30 16 7 C -0.09 -0.87 3.24 -88.76 -0.29 -1.16 16 8 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 9 C 0.07 0.76 5.03 -3.82 -0.02 0.74 16 10 N -0.68 -9.22 5.52 -113.78 -0.63 -9.85 16 11 C 0.07 1.10 4.65 -3.83 -0.02 1.08 16 12 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 13 C -0.12 -2.24 8.06 37.15 0.30 -1.94 16 14 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 15 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 16 C -0.51 -13.99 8.20 -34.44 -0.28 -14.27 16 17 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 18 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 19 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 20 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.04 0.39 4.84 -1.90 -0.01 0.38 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 7.23 -51.93 -0.38 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.34 7.98 -51.93 -0.41 -0.08 16 29 H 0.05 0.40 7.28 -51.93 -0.38 0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.37 7.64 -51.93 -0.40 -0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.34 4.47 6.77 -39.29 -0.27 4.21 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 42 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 46 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 47 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 48 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.08 0.71 7.78 -51.93 -0.40 0.31 16 51 H 0.04 0.41 7.92 -51.93 -0.41 0.00 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -29.06 378.73 -10.13 -39.19 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -10.21 Total: -0.46 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 0.03 Total: -18.75 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.99 Total: -42.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.06 -10.13 -39.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135166763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds