Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 N 1.46897 * 109.47400 * 120.00214 * 2 1 3 5 5 C 1.48528 * 111.00336 * 179.71681 * 4 2 1 6 6 C 1.55098 * 103.28693 * 200.33248 * 5 4 2 7 7 C 1.54602 * 102.84404 * 37.30547 * 6 5 4 8 8 H 1.08996 * 110.30986 * 97.11811 * 7 6 5 9 9 C 1.53004 * 110.30910 * 219.18475 * 7 6 5 10 10 N 1.46894 * 109.47035 * 292.20869 * 9 7 6 11 11 C 1.46907 * 110.99668 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46852 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47256 * 299.99917 * 12 11 10 14 14 C 1.53005 * 109.47340 * 60.00264 * 12 11 10 15 15 C 1.53006 * 109.46795 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.46773 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00456 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99926 * 179.97438 * 16 15 12 19 19 N 1.31515 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00262 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46900 * 60.00138 * 20 18 16 22 22 H 1.48500 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46975 * 300.00182 * 20 18 16 24 24 C 1.47900 * 110.99839 * 62.31963 * 4 2 1 25 25 H 1.09008 * 109.47024 * 300.00173 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99166 * 1 2 3 27 27 H 1.08995 * 109.47562 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47252 * 240.00651 * 2 1 3 29 29 H 1.09006 * 109.47185 * 185.67744 * 3 2 1 30 30 H 1.08996 * 109.47423 * 305.68054 * 3 2 1 31 31 H 1.09002 * 109.47057 * 65.68035 * 3 2 1 32 32 H 1.09001 * 110.66637 * 318.71204 * 5 4 2 33 33 H 1.08996 * 110.66928 * 81.67868 * 5 4 2 34 34 H 1.09005 * 110.71311 * 278.99840 * 6 5 4 35 35 H 1.09001 * 110.81380 * 155.65996 * 6 5 4 36 36 H 1.08999 * 109.46858 * 172.20976 * 9 7 6 37 37 H 1.09003 * 109.46667 * 52.21076 * 9 7 6 38 38 H 1.00899 * 111.00335 * 56.05231 * 10 9 7 39 39 H 1.08995 * 109.47112 * 59.99968 * 11 10 9 40 40 H 1.09000 * 109.47272 * 299.99695 * 11 10 9 41 41 H 1.09005 * 109.47257 * 60.00225 * 13 12 11 42 42 H 1.09003 * 109.47445 * 180.02562 * 13 12 11 43 43 H 1.08996 * 109.47542 * 300.00312 * 13 12 11 44 44 H 1.08998 * 109.46981 * 59.99412 * 14 12 11 45 45 H 1.08998 * 109.47259 * 179.97438 * 14 12 11 46 46 H 1.08998 * 109.46505 * 300.00120 * 14 12 11 47 47 H 1.09000 * 109.46934 * 299.99904 * 15 12 11 48 48 H 1.08996 * 109.46796 * 60.00427 * 15 12 11 49 49 H 0.97005 * 120.00075 * 179.97438 * 19 18 16 50 50 H 1.09003 * 109.91907 * 26.48967 * 24 4 2 51 51 H 1.09008 * 109.91962 * 265.19833 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.5044 -0.7183 1.2303 6 6 3.8205 -1.8844 2.2027 7 6 2.7213 -2.9187 1.8679 8 1 3.1051 -3.6680 1.1757 9 6 2.2151 -3.5885 3.1470 10 7 3.2801 -4.4249 3.7163 11 6 2.8291 -5.0849 4.9488 12 6 3.9629 -5.9445 5.5112 13 6 4.3590 -7.0040 4.4809 14 6 5.1705 -5.0572 5.8204 15 6 3.4934 -6.6314 6.7952 16 6 4.6100 -7.4786 7.3489 17 1 5.5597 -7.5224 6.8365 18 6 4.4196 -8.1969 8.5101 19 7 3.2633 -8.1432 9.1344 20 14 5.8039 -9.2466 9.1969 21 1 6.9763 -8.3855 9.4958 22 1 5.3481 -9.9133 10.4430 23 1 6.1875 -10.2755 8.1973 24 6 1.5917 -2.1082 1.2058 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1253 1.4442 -0.1017 30 1 1.5960 1.9849 -0.8347 31 1 1.7621 1.9261 0.9365 32 1 3.9063 -0.9264 0.2387 33 1 3.8977 0.2233 1.6135 34 1 3.7381 -1.5556 3.2387 35 1 4.8104 -2.2960 2.0052 36 1 1.3504 -4.2100 2.9140 37 1 1.9288 -2.8235 3.8688 38 1 4.1156 -3.8838 3.8812 39 1 1.9685 -5.7166 4.7287 40 1 2.5474 -4.3301 5.6830 41 1 4.6936 -6.5143 3.5664 42 1 5.1665 -7.6167 4.8818 43 1 3.4988 -7.6361 4.2607 44 1 4.8883 -4.3024 6.5543 45 1 5.9781 -5.6696 6.2215 46 1 5.5050 -4.5675 4.9059 47 1 3.2116 -5.8763 7.5290 48 1 2.6330 -7.2634 6.5754 49 1 3.1292 -8.6490 9.9513 50 1 1.4364 -2.4539 0.1838 51 1 0.6717 -2.2154 1.7807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135166789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -25.133933 kcal Electronic energy + Delta-G solvation = -22932.482227 eV Core-core repulsion = 19865.391317 eV Total energy + Delta-G solvation = -3067.090910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69026 -37.61576 -35.56541 -33.53350 -32.11024 -29.85757 -29.45642 -27.32530 -26.88679 -26.29824 -25.52009 -23.67823 -22.39201 -21.94678 -20.45441 -19.90100 -17.81855 -16.55927 -16.27413 -16.11982 -15.30078 -14.68224 -14.62105 -14.23000 -14.03840 -13.72141 -13.52499 -13.29579 -12.90482 -12.64992 -12.49807 -12.43377 -12.38598 -12.29231 -11.96454 -11.63564 -11.46709 -11.22166 -11.12789 -11.09493 -10.95937 -10.88816 -10.77102 -10.69167 -10.64342 -10.44620 -10.20830 -10.08528 -9.64347 -8.97727 -8.80114 -8.63400 -8.28814 -8.02624 -5.93416 -3.93517 3.36438 3.40975 3.43201 3.70307 4.28563 4.46381 4.50572 4.57121 4.70023 4.80370 4.97560 5.05909 5.08468 5.28751 5.36085 5.40257 5.42149 5.42235 5.51418 5.52225 5.58585 5.68367 5.70619 5.74649 5.79007 5.82258 5.87873 5.90503 5.98948 6.02136 6.07705 6.18356 6.30937 6.38363 6.55172 6.69467 6.70904 6.82896 6.86125 6.86487 7.24492 7.27306 7.29724 7.45898 7.72037 7.76065 7.89559 8.06975 8.51462 9.11666 9.68996 11.18221 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.002588 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.986719 B =10817.051080 C =11021.034678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 C -0.145 4.145 4 N -0.513 5.513 5 C 0.036 3.964 6 C -0.120 4.120 7 C -0.096 4.096 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.687 5.687 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.043 3.957 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.337 0.663 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.259 0.741 50 H 0.043 0.957 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 16.577 -18.734 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 N -0.238 5.238 5 C -0.091 4.091 6 C -0.159 4.159 7 C -0.115 4.115 8 H 0.101 0.899 9 C -0.061 4.061 10 N -0.319 5.319 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.086 4.086 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.039 16.259 -18.540 24.846 hybrid contribution 0.912 -0.322 0.416 1.053 sum -2.127 15.937 -18.124 24.228 Atomic orbital electron populations 1.21844 0.94228 1.02083 1.02094 1.21805 0.95950 0.95335 0.91082 1.21845 1.00794 0.95253 1.02332 1.64840 1.08434 1.13175 1.37348 1.23230 0.88232 0.99369 0.98310 1.22605 0.98645 0.94729 0.99875 1.22034 0.95016 0.96773 0.97680 0.89921 1.21971 0.94970 0.94866 0.94315 1.60590 1.06589 1.34144 1.30585 1.22099 0.98693 0.96503 0.88575 1.20620 0.93291 0.94564 0.97356 1.21593 1.00779 0.97808 0.97102 1.21766 0.99156 0.99027 0.98642 1.19125 0.96420 0.94850 0.90021 1.21201 0.98953 1.26540 1.07778 0.92368 1.25021 0.95452 0.97047 0.97125 1.69960 1.23127 1.42352 1.18343 0.86723 0.82597 0.80721 0.78332 1.20371 1.21467 1.20331 1.22880 0.98921 0.87393 0.99361 0.91730 0.92406 0.92620 0.94296 0.92816 0.92329 0.91662 0.93996 0.90197 0.90836 0.90763 0.91368 0.95255 0.84380 0.91674 0.95956 0.93933 0.92752 0.94225 0.94134 0.91753 0.94863 0.96928 0.96702 0.93133 0.93830 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.13 37.16 0.34 -0.74 16 2 C 0.07 0.55 2.36 -67.71 -0.16 0.39 16 3 C -0.14 -1.03 8.91 37.16 0.33 -0.70 16 4 N -0.51 -4.93 5.11 -222.40 -1.14 -6.07 16 5 C 0.04 0.33 5.46 -1.81 -0.01 0.32 16 6 C -0.12 -1.18 5.84 -24.78 -0.14 -1.32 16 7 C -0.10 -1.00 3.23 -89.26 -0.29 -1.29 16 8 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 9 C 0.07 0.85 4.83 -3.83 -0.02 0.83 16 10 N -0.69 -10.01 5.71 -113.78 -0.65 -10.66 16 11 C 0.07 1.23 4.65 -3.82 -0.02 1.22 16 12 C -0.06 -1.17 0.60 -154.50 -0.09 -1.26 16 13 C -0.12 -2.27 8.06 37.15 0.30 -1.97 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.96 7.65 -34.44 -0.26 -14.23 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.04 0.42 5.12 -2.76 -0.01 0.40 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.43 7.20 -51.93 -0.37 0.05 16 28 H 0.04 0.33 7.99 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 7.24 -51.93 -0.38 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.36 7.99 -51.93 -0.42 -0.05 16 33 H 0.08 0.68 7.78 -51.93 -0.40 0.28 16 34 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16 38 H 0.34 4.73 6.02 -39.29 -0.24 4.50 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 42 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 46 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.04 0.40 7.60 -51.93 -0.39 0.01 16 51 H 0.08 0.80 7.68 -51.92 -0.40 0.40 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -28.98 380.78 -10.48 -39.46 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -10.19 Total: -0.56 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 0.04 Total: -18.29 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -1.05 Total: -43.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.98 -10.48 -39.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135166789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.323 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds