Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47466 * 2 1 4 4 C 1.46846 * 110.99617 * 294.20987 * 3 2 1 5 5 C 1.53040 * 109.51964 * 174.15808 * 4 3 2 6 6 C 1.53119 * 109.28089 * 59.17912 * 5 4 3 7 7 C 1.52995 * 109.57448 * 182.40979 * 6 5 4 8 8 N 1.46898 * 109.47160 * 294.71309 * 7 6 5 9 9 C 1.46899 * 111.00303 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47333 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47242 * 300.00113 * 10 9 8 12 12 C 1.53001 * 109.47429 * 60.00055 * 10 9 8 13 13 C 1.52998 * 109.47272 * 180.02562 * 10 9 8 14 14 C 1.50699 * 109.47490 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99609 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00542 * 179.97438 * 14 13 10 17 17 N 1.31522 * 119.99476 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00342 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46976 * 60.00247 * 18 16 14 20 20 H 1.48505 * 109.46927 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47148 * 300.00174 * 18 16 14 22 22 C 1.53124 * 109.15841 * 302.34776 * 6 5 4 23 23 C 1.46846 * 111.00204 * 169.99882 * 3 2 1 24 24 H 1.09002 * 109.47207 * 299.99940 * 1 2 3 25 25 H 1.09002 * 109.46874 * 60.00238 * 1 2 3 26 26 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47222 * 239.99574 * 2 1 3 28 28 H 1.09007 * 109.47397 * 120.00253 * 2 1 3 29 29 H 1.08996 * 109.46231 * 294.17554 * 4 3 2 30 30 H 1.09004 * 109.46418 * 54.14394 * 4 3 2 31 31 H 1.09004 * 109.50602 * 299.23671 * 5 4 3 32 32 H 1.08998 * 109.50366 * 179.12192 * 5 4 3 33 33 H 1.08999 * 109.51878 * 62.24548 * 6 5 4 34 34 H 1.08999 * 109.47534 * 54.71390 * 7 6 5 35 35 H 1.09002 * 109.47076 * 174.71469 * 7 6 5 36 36 H 1.00904 * 111.00145 * 303.95539 * 8 7 6 37 37 H 1.08996 * 109.46837 * 300.00298 * 9 8 7 38 38 H 1.09003 * 109.46962 * 60.00323 * 9 8 7 39 39 H 1.08997 * 109.47331 * 59.99800 * 11 10 9 40 40 H 1.08996 * 109.47265 * 179.97438 * 11 10 9 41 41 H 1.09004 * 109.46568 * 300.00070 * 11 10 9 42 42 H 1.08996 * 109.46945 * 59.99616 * 12 10 9 43 43 H 1.08996 * 109.47541 * 180.02562 * 12 10 9 44 44 H 1.09002 * 109.46641 * 300.00435 * 12 10 9 45 45 H 1.09004 * 109.46975 * 300.00150 * 13 10 9 46 46 H 1.08994 * 109.47678 * 59.99853 * 13 10 9 47 47 H 0.96998 * 119.99356 * 180.02562 * 17 16 14 48 48 H 1.08999 * 109.49853 * 297.70868 * 22 6 5 49 49 H 1.08994 * 109.53481 * 177.61659 * 22 6 5 50 50 H 1.09001 * 109.45990 * 305.85570 * 23 3 2 51 51 H 1.08999 * 109.46398 * 65.83493 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 6 3.9609 5.1187 -0.7510 8 7 3.7360 5.8219 -2.0210 9 6 4.1041 7.2397 -1.9101 10 6 3.8560 7.9372 -3.2490 11 6 4.7050 7.2733 -4.3351 12 6 2.3755 7.8221 -3.6176 13 6 4.2400 9.4138 -3.1337 14 6 3.9950 10.1010 -4.4523 15 1 3.6050 9.5406 -5.2891 16 6 4.2689 11.4452 -4.5906 17 7 4.7444 12.1275 -3.5717 18 14 3.9660 12.2969 -6.2253 19 1 2.5291 12.1850 -6.5829 20 1 4.3386 13.7301 -6.1132 21 1 4.7901 11.6526 -7.2793 22 6 3.9175 2.8873 0.3762 23 6 3.4680 1.4311 0.2381 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.1942 1.6026 -2.0816 30 1 0.5903 1.9904 -1.4148 31 1 1.5214 4.0138 -0.3342 32 1 1.8117 4.0475 -2.0907 33 1 4.1079 3.2131 -1.7464 34 1 3.3544 5.5768 0.0303 35 1 5.0144 5.1864 -0.4798 36 1 4.2375 5.3763 -2.7748 37 1 3.4989 7.7127 -1.1368 38 1 5.1587 7.3218 -1.6472 39 1 4.4320 6.2213 -4.4174 40 1 4.5280 7.7700 -5.2890 41 1 5.7598 7.3555 -4.0724 42 1 1.7707 8.2950 -2.8440 43 1 2.1989 8.3186 -4.5717 44 1 2.1024 6.7700 -3.6998 45 1 3.6354 9.8870 -2.3599 46 1 5.2947 9.4956 -2.8714 47 1 4.9368 13.0733 -3.6689 48 1 3.4074 3.3469 1.2228 49 1 4.9948 2.9219 0.5381 50 1 3.7027 0.8900 1.1548 51 1 3.9888 0.9684 -0.6002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135174546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -30.783633 kcal Electronic energy + Delta-G solvation = -22994.785080 eV Core-core repulsion = 19927.449181 eV Total energy + Delta-G solvation = -3067.335899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.46646 -37.62493 -35.60227 -33.34512 -32.05685 -30.97957 -30.10321 -27.13398 -26.39649 -26.26541 -24.55965 -23.48862 -22.66170 -21.79433 -21.14539 -19.81570 -17.80225 -16.37963 -16.16262 -15.57486 -15.18781 -14.96346 -14.65324 -14.47373 -14.27910 -13.79079 -13.68636 -13.37458 -13.11983 -12.86919 -12.51535 -12.28511 -12.03364 -11.94459 -11.86951 -11.84742 -11.61000 -11.28330 -11.24960 -10.94233 -10.84947 -10.76612 -10.63289 -10.45562 -10.43646 -10.28513 -10.20141 -10.05620 -9.64074 -8.97568 -8.80168 -8.52475 -8.29033 -8.00523 -5.93739 -3.93778 3.36181 3.40722 3.42974 3.67385 4.38356 4.51987 4.62170 4.70335 4.77511 4.91623 5.02492 5.15515 5.20203 5.26885 5.32041 5.40196 5.41863 5.47622 5.58265 5.59917 5.65354 5.67247 5.75649 5.82801 5.84855 5.90045 5.95324 5.99235 6.02698 6.09383 6.29069 6.30639 6.38823 6.43392 6.55278 6.69967 6.82762 6.86304 6.89777 6.92839 7.24405 7.27686 7.29984 7.46344 7.71718 7.75860 7.89305 8.06748 8.51244 9.11431 9.68731 11.17921 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.039036 B = 0.002678 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.110304 B =10452.125640 C =10797.507045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.052 3.948 5 C -0.101 4.101 6 C -0.084 4.084 7 C 0.064 3.936 8 N -0.685 5.685 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.111 4.111 23 C 0.058 3.942 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.336 0.664 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -23.385 7.391 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.076 4.076 5 C -0.139 4.139 6 C -0.103 4.103 7 C -0.066 4.066 8 N -0.316 5.316 9 C -0.058 4.058 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.150 4.150 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.890 -22.843 7.954 24.677 hybrid contribution 1.360 0.136 -1.464 2.003 sum -3.530 -22.707 6.490 23.879 Atomic orbital electron populations 1.21808 0.94871 1.01369 1.02665 1.22049 0.96192 0.89115 1.00414 1.61985 1.13726 1.15074 1.35648 1.22216 1.00689 0.95342 0.89355 1.21523 0.94964 0.94150 1.03234 1.21185 0.96983 0.94925 0.97229 1.21964 0.98216 0.93133 0.93287 1.60566 1.62663 1.03235 1.05152 1.22089 0.97409 0.87028 0.99286 1.20615 0.95607 0.97770 0.91815 1.21766 0.98643 0.97781 1.00391 1.21585 0.95186 0.99409 1.01030 1.19122 0.96247 0.87934 0.97110 1.21201 1.42174 0.93772 0.97312 0.92376 1.25023 0.95620 0.97725 0.96286 1.69963 1.45179 1.08364 1.30282 0.86723 0.78626 0.78506 0.84518 1.20313 1.21464 1.20392 1.21611 1.00384 0.94446 0.98537 1.22044 0.87417 0.97319 1.00168 0.91805 0.92533 0.92493 0.95243 0.91059 0.95312 0.90659 0.91394 0.90096 0.91945 0.91198 0.95906 0.84570 0.91676 0.96073 0.94842 0.91787 0.94192 0.94217 0.92807 0.93905 0.96702 0.96979 0.93137 0.90955 0.91747 0.91060 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.84 37.15 0.37 -0.70 16 2 C 0.05 0.40 5.68 -3.83 -0.02 0.37 16 3 N -0.54 -5.08 4.66 -234.67 -1.09 -6.17 16 4 C 0.05 0.50 5.29 -3.83 -0.02 0.48 16 5 C -0.10 -1.09 5.24 -26.65 -0.14 -1.23 16 6 C -0.08 -0.88 2.39 -90.50 -0.22 -1.10 16 7 C 0.06 0.78 5.08 -3.83 -0.02 0.76 16 8 N -0.68 -9.79 5.23 -113.79 -0.60 -10.39 16 9 C 0.07 1.23 4.65 -3.83 -0.02 1.21 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 11 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 12 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.94 7.65 -34.44 -0.26 -14.21 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.11 -1.03 5.38 -26.65 -0.14 -1.18 16 23 C 0.06 0.52 5.46 -3.84 -0.02 0.49 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 28 H 0.07 0.51 7.99 -51.93 -0.41 0.10 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.70 6.21 -51.93 -0.32 0.38 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.34 4.66 6.77 -39.29 -0.27 4.39 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 44 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.56 8.02 -51.93 -0.42 0.15 16 51 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -28.79 379.81 -10.66 -39.45 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -10.20 Total: -0.81 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.21 Total: -18.19 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.95 Total: -42.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.79 -10.66 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135174546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.662 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds