Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4 8 8 N 1.46898 * 109.47198 * 179.97438 * 7 6 5 9 9 C 1.46903 * 111.00000 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47119 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47307 * 300.00371 * 10 9 8 12 12 C 1.53003 * 109.47101 * 60.00374 * 10 9 8 13 13 C 1.53001 * 109.47370 * 179.97438 * 10 9 8 14 14 C 1.50687 * 109.47566 * 180.02562 * 13 10 9 15 15 H 1.08013 * 120.00057 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00398 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99899 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00251 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47314 * 119.99890 * 18 16 14 21 21 H 1.48504 * 109.47180 * 239.99962 * 18 16 14 22 22 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 23 23 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 24 24 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 25 25 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 26 26 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 27 27 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 28 28 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 29 29 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 30 30 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 31 31 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 32 32 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 33 33 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 34 34 H 1.09002 * 109.46849 * 300.00072 * 7 6 5 35 35 H 1.09004 * 109.47035 * 59.99259 * 7 6 5 36 36 H 1.00897 * 110.99990 * 56.04542 * 8 7 6 37 37 H 1.09000 * 109.47491 * 300.00408 * 9 8 7 38 38 H 1.09004 * 109.47124 * 60.00173 * 9 8 7 39 39 H 1.09003 * 109.47083 * 59.99968 * 11 10 9 40 40 H 1.09001 * 109.47066 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.46909 * 299.99759 * 11 10 9 42 42 H 1.08997 * 109.47493 * 59.99512 * 12 10 9 43 43 H 1.09002 * 109.47503 * 180.02562 * 12 10 9 44 44 H 1.09003 * 109.47124 * 299.99931 * 12 10 9 45 45 H 1.09008 * 109.47237 * 300.00806 * 13 10 9 46 46 H 1.09003 * 109.46892 * 59.99645 * 13 10 9 47 47 H 0.96995 * 119.99627 * 179.97438 * 17 16 14 48 48 H 1.09001 * 109.50326 * 182.41022 * 22 5 4 49 49 H 1.08996 * 109.53714 * 62.30612 * 22 5 4 50 50 H 1.09005 * 109.46673 * 294.18102 * 23 2 1 51 51 H 1.09003 * 109.46587 * 54.14643 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2487 1.8420 0.9590 8 7 7.7055 1.7535 0.7927 9 6 8.3291 3.0793 0.8999 10 6 9.8429 2.9468 0.7224 11 6 10.4055 2.0291 1.8097 12 6 10.1448 2.3511 -0.6542 13 6 10.4924 4.3277 0.8334 14 6 11.9833 4.1972 0.6580 15 1 12.4238 3.2264 0.4842 16 6 12.7853 5.3171 0.7193 17 7 12.2490 6.4992 0.9304 18 14 14.6334 5.1554 0.5011 19 1 14.9826 3.7294 0.2776 20 1 15.0661 5.9608 -0.6691 21 1 15.3209 5.6474 1.7220 22 6 3.5182 -0.8715 1.0210 23 6 1.9952 -0.7707 1.1338 24 1 -0.3634 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0754 26 1 -0.3633 0.5778 -0.8499 27 1 1.5634 1.9257 -0.8330 28 1 1.7324 1.8608 0.9376 29 1 3.9099 2.3512 -0.1310 30 1 3.7820 0.8572 -1.0905 31 1 3.8886 1.0355 1.9561 32 1 6.0519 -0.2007 1.6142 33 1 5.8648 0.0298 -0.1408 34 1 5.8328 2.4877 0.1856 35 1 6.0198 2.2571 1.9406 36 1 7.9433 1.3122 -0.0829 37 1 7.9279 3.7333 0.1256 38 1 8.1144 3.5036 1.8808 39 1 9.9428 1.0453 1.7301 40 1 11.4841 1.9350 1.6835 41 1 10.1905 2.4535 2.7904 42 1 9.7440 3.0048 -1.4289 43 1 11.2233 2.2562 -0.7806 44 1 9.6821 1.3673 -0.7338 45 1 10.0914 4.9811 0.0585 46 1 10.2773 4.7525 1.8139 47 1 12.8133 7.2869 0.9739 48 1 3.9098 -1.4302 1.8710 49 1 3.7814 -1.3842 0.0959 50 1 1.7324 -0.2708 2.0661 51 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135175702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -33.801486 kcal Electronic energy + Delta-G solvation = -22643.773908 eV Core-core repulsion = 19576.307145 eV Total energy + Delta-G solvation = -3067.466763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49933 -37.68900 -35.74619 -33.68079 -32.13515 -31.13229 -29.57790 -27.00701 -26.33010 -26.23586 -24.71408 -23.64883 -22.94661 -21.92871 -21.05633 -19.89890 -17.78591 -16.22503 -16.16005 -15.71582 -15.36205 -15.01569 -14.73552 -14.70834 -14.19285 -13.97632 -13.60733 -13.39709 -13.15410 -12.70208 -12.62086 -12.47997 -12.31320 -12.15984 -11.97262 -11.75474 -11.43941 -11.42681 -11.19295 -10.95460 -10.83449 -10.74090 -10.72614 -10.47732 -10.45410 -10.35162 -10.20750 -10.03933 -9.64451 -8.97974 -8.78542 -8.66159 -8.29863 -8.01025 -5.94221 -3.94075 3.33839 3.41594 3.45308 3.61403 4.32029 4.50819 4.52932 4.56443 4.75798 4.84585 5.01729 5.05080 5.17720 5.20579 5.22587 5.35758 5.41448 5.42030 5.45425 5.50073 5.56035 5.62755 5.70967 5.75982 5.81764 5.83031 5.89769 5.95332 6.01512 6.07638 6.21946 6.30083 6.32193 6.38664 6.55456 6.70341 6.74079 6.76312 6.83180 6.86558 7.24599 7.27925 7.29967 7.46594 7.72037 7.76228 7.89026 8.06503 8.51203 9.11616 9.68592 11.17514 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.047416 B = 0.002392 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.377263 B =11703.924197 C =11967.417228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.087 4.087 6 C -0.109 4.109 7 C 0.057 3.943 8 N -0.688 5.688 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.060 0.940 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.111 4.111 23 C 0.055 3.945 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.337 0.663 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.258 0.742 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 -13.547 -0.916 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.106 4.106 6 C -0.147 4.147 7 C -0.072 4.072 8 N -0.320 5.320 9 C -0.058 4.058 10 C -0.059 4.059 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.005 4.005 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.149 4.149 23 C -0.073 4.073 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.454 -13.750 -0.666 25.491 hybrid contribution 0.420 1.011 -0.184 1.111 sum -21.034 -12.738 -0.850 24.605 Atomic orbital electron populations 1.22352 0.87483 1.02141 1.00393 1.61935 1.07370 1.14059 1.43527 1.22121 0.96050 0.88804 1.00318 1.21710 0.93630 1.00616 0.99221 1.21178 0.95012 0.95826 0.98587 1.21574 0.93451 0.97425 1.02286 1.21988 0.88547 0.96138 1.00578 1.60574 1.07824 1.22721 1.40867 1.22091 0.95648 0.88057 1.00028 1.20624 0.91462 0.99025 0.94773 1.21598 1.00486 0.97781 0.97462 1.21771 1.02295 0.97873 0.96696 1.19132 0.95068 0.89385 0.96882 1.21283 0.92040 0.93222 1.47771 0.92228 1.25032 0.98430 0.95529 0.95755 1.69981 1.35021 0.98231 1.50558 0.86600 0.86145 0.78065 0.77573 1.19767 1.21216 1.21184 1.21637 0.93713 0.96985 1.02562 1.22107 0.95968 0.97966 0.91215 0.95827 0.91428 0.91414 0.90881 0.95013 0.91165 0.91068 0.91507 0.91122 0.92121 0.95629 0.91596 0.84432 0.96026 0.91751 0.93869 0.92726 0.94238 0.94144 0.91740 0.94784 0.96948 0.96713 0.93256 0.91396 0.91024 0.95037 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.59 60.07 0.58 0.74 16 2 N -0.54 -4.68 4.91 -242.95 -1.19 -5.88 16 3 C 0.05 0.47 5.46 -3.83 -0.02 0.45 16 4 C -0.11 -1.02 5.08 -26.65 -0.14 -1.16 16 5 C -0.09 -0.78 2.25 -90.50 -0.20 -0.98 16 6 C -0.11 -1.11 4.95 -26.73 -0.13 -1.24 16 7 C 0.06 0.70 5.45 -3.83 -0.02 0.68 16 8 N -0.69 -10.14 5.71 -113.78 -0.65 -10.79 16 9 C 0.07 1.25 4.65 -3.82 -0.02 1.23 16 10 C -0.06 -1.18 0.60 -154.51 -0.09 -1.28 16 11 C -0.12 -2.29 8.07 37.16 0.30 -1.99 16 12 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 13 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 14 C -0.50 -13.95 7.65 -34.45 -0.26 -14.21 16 15 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 16 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.11 -0.91 5.38 -26.65 -0.14 -1.06 16 23 C 0.06 0.44 5.46 -3.83 -0.02 0.42 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.64 6.71 -51.93 -0.35 0.29 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.31 6.64 -51.93 -0.34 -0.03 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.34 4.78 6.77 -39.29 -0.27 4.51 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 40 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 44 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 45 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -29.32 380.97 -10.74 -40.06 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -10.26 Total: -1.14 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.09 Total: -18.40 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.11 Total: -43.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.32 -10.74 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135175702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.260 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds