Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 120.00214 * 2 1 4 4 N 1.34777 * 119.99758 * 180.27214 * 2 1 3 5 5 C 1.46498 * 120.00246 * 179.72628 * 4 2 1 6 6 H 1.09003 * 109.49870 * 325.00166 * 5 4 2 7 7 C 1.53122 * 109.50415 * 85.07992 * 5 4 2 8 8 C 1.53122 * 109.15695 * 177.55786 * 7 5 4 9 9 C 1.53034 * 109.31015 * 302.40440 * 8 7 5 10 10 N 1.46840 * 109.52418 * 59.16375 * 9 8 7 11 11 C 1.46903 * 111.00121 * 174.15943 * 10 9 8 12 12 C 1.52993 * 109.47077 * 306.70636 * 11 10 9 13 13 C 1.53000 * 109.47332 * 320.94704 * 12 11 10 14 14 C 1.53004 * 109.47222 * 80.94403 * 12 11 10 15 15 C 1.52999 * 109.47367 * 200.94540 * 12 11 10 16 16 C 1.50695 * 109.47201 * 180.02562 * 15 12 11 17 17 H 1.08002 * 120.00385 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99832 * 180.02562 * 16 15 12 19 19 N 1.31506 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99775 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47282 * 89.99789 * 20 18 16 22 22 H 1.48501 * 109.47023 * 209.99777 * 20 18 16 23 23 H 1.48499 * 109.47354 * 329.99704 * 20 18 16 24 24 C 1.46856 * 111.19690 * 298.25671 * 10 9 8 25 25 H 1.09009 * 109.46851 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47357 * 119.99694 * 1 2 3 27 27 H 1.08993 * 109.47322 * 240.00037 * 1 2 3 28 28 H 0.97006 * 120.00049 * 359.72999 * 4 2 1 29 29 H 1.08999 * 109.51943 * 297.50544 * 7 5 4 30 30 H 1.09000 * 109.52067 * 57.68682 * 7 5 4 31 31 H 1.09003 * 109.49852 * 182.44486 * 8 7 5 32 32 H 1.09003 * 109.50289 * 62.36899 * 8 7 5 33 33 H 1.09000 * 109.46490 * 299.14116 * 9 8 7 34 34 H 1.09004 * 109.45829 * 179.17476 * 9 8 7 35 35 H 1.08996 * 109.46983 * 66.71124 * 11 10 9 36 36 H 1.09001 * 109.47155 * 186.70775 * 11 10 9 37 37 H 1.09001 * 109.47422 * 59.99402 * 13 12 11 38 38 H 1.09000 * 109.47397 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.46842 * 300.00086 * 13 12 11 40 40 H 1.09001 * 109.47195 * 85.67659 * 14 12 11 41 41 H 1.08996 * 109.47613 * 205.68105 * 14 12 11 42 42 H 1.09008 * 109.46982 * 325.68158 * 14 12 11 43 43 H 1.09005 * 109.46856 * 300.00052 * 15 12 11 44 44 H 1.08995 * 109.46849 * 59.99716 * 15 12 11 45 45 H 0.97003 * 120.00242 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.45857 * 301.72488 * 24 10 9 47 47 H 1.08999 * 109.45333 * 181.75363 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0055 5 6 3.6458 -1.1673 -0.0116 6 1 4.0073 -0.3243 -0.6005 7 6 4.1630 -1.0470 1.4246 8 6 5.6929 -1.1092 1.4146 9 6 6.1419 -2.4177 0.7601 10 7 5.6226 -2.4837 -0.6118 11 6 6.1476 -3.6603 -1.3174 12 6 7.6750 -3.6683 -1.2293 13 6 8.2018 -2.2393 -1.3754 14 6 8.1047 -4.2342 0.1257 15 6 8.2460 -4.5394 -2.3500 16 6 9.7504 -4.5478 -2.2628 17 1 10.2494 -3.9875 -1.4860 18 6 10.4898 -5.2700 -3.1754 19 7 9.8822 -5.9518 -4.1216 20 14 12.3547 -5.2798 -3.0677 21 1 12.7945 -6.4006 -2.1984 22 1 12.9281 -5.4530 -4.4266 23 1 12.8241 -3.9937 -2.4926 24 6 4.1541 -2.4741 -0.6247 25 1 -0.3633 1.0278 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8899 28 1 1.6958 -2.0073 -0.0056 29 1 3.8392 -0.0970 1.8499 30 1 3.7694 -1.8682 2.0235 31 1 6.0654 -1.0677 2.4381 32 1 6.0878 -0.2652 0.8491 33 1 5.7588 -3.2612 1.3345 34 1 7.2310 -2.4579 0.7385 35 1 5.7523 -4.5660 -0.8576 36 1 5.8442 -3.6218 -2.3637 37 1 7.7950 -1.6187 -0.5770 38 1 9.2900 -2.2451 -1.3130 39 1 7.8957 -1.8361 -2.3407 40 1 8.1505 -5.3217 0.0673 41 1 9.0876 -3.8427 0.3879 42 1 7.3820 -3.9414 0.8875 43 1 7.8706 -5.5575 -2.2459 44 1 7.9398 -4.1363 -3.3153 45 1 10.4024 -6.4602 -4.7635 46 1 3.7803 -3.3173 -0.0439 47 1 3.7996 -2.5552 -1.6523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153950101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = -37.371109 kcal Electronic energy + Delta-G solvation = -23375.606736 eV Core-core repulsion = 20172.152088 eV Total energy + Delta-G solvation = -3203.454648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25503 -39.11223 -36.57493 -34.30008 -32.72817 -31.91802 -30.83273 -28.71364 -26.86628 -26.69340 -26.27666 -23.49814 -22.67719 -22.14436 -20.63285 -19.83628 -18.06425 -17.00248 -16.47009 -16.11979 -15.67482 -15.39307 -14.89450 -14.40036 -14.23115 -13.99935 -13.72428 -13.53104 -13.24420 -13.02129 -12.89557 -12.58145 -12.39751 -12.24365 -11.99661 -11.72681 -11.44041 -10.98901 -10.96426 -10.82862 -10.78343 -10.58535 -10.53581 -10.41300 -10.16962 -10.08169 -9.79240 -9.67749 -9.21849 -8.91069 -8.80023 -8.30752 -8.04786 -5.95391 -3.95324 2.45827 2.96339 3.33807 3.40588 3.43636 4.18795 4.50010 4.53626 4.74563 4.80765 4.96271 5.03118 5.06427 5.15589 5.28382 5.40613 5.50077 5.54137 5.58416 5.60911 5.68434 5.76600 5.89434 5.94158 5.98777 6.02433 6.16249 6.23892 6.29580 6.36033 6.37352 6.42542 6.62515 6.77622 6.89387 7.17957 7.22623 7.26587 7.31282 7.38621 7.44912 7.70439 7.86841 8.04565 8.04715 8.49431 9.10146 9.67596 11.16306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037332 B = 0.003273 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.843258 B = 8553.280031 C = 8840.087533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.545 6.545 4 N -0.728 5.728 5 C 0.146 3.854 6 H 0.097 0.903 7 C -0.127 4.127 8 C -0.117 4.117 9 C 0.032 3.968 10 N -0.526 5.526 11 C 0.068 3.932 12 C -0.059 4.059 13 C -0.121 4.121 14 C -0.149 4.149 15 C 0.036 3.964 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.050 3.950 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.113 0.887 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.259 0.741 46 H 0.032 0.968 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.298 7.169 10.760 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.422 6.422 4 N -0.379 5.379 5 C 0.042 3.958 6 H 0.115 0.885 7 C -0.166 4.166 8 C -0.155 4.155 9 C -0.095 4.095 10 N -0.250 5.250 11 C -0.059 4.059 12 C -0.060 4.060 13 C -0.178 4.178 14 C -0.206 4.206 15 C -0.001 4.001 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.079 4.079 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.131 0.869 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.666 8.239 10.349 21.278 hybrid contribution 0.450 -1.431 0.304 1.530 sum -16.216 6.808 10.653 20.562 Atomic orbital electron populations 1.21924 0.91861 1.05463 1.04160 1.20787 0.90509 0.83556 0.75489 1.90736 1.70840 1.31378 1.49249 1.46109 1.07517 1.08666 1.75633 1.20978 0.78400 0.99565 0.96880 0.88497 1.21943 0.96551 1.01820 0.96270 1.21615 0.94481 0.98953 1.00494 1.22895 1.02895 0.95592 0.88099 1.61943 1.05090 1.42296 1.15682 1.22312 0.96793 0.88761 0.98043 1.20650 0.90862 0.97161 0.97294 1.21799 1.00342 0.95056 1.00595 1.22351 1.00578 1.01181 0.96460 1.19161 0.95466 0.93595 0.91889 1.21223 0.91604 1.28633 1.12913 0.92402 1.25011 0.98198 0.95793 0.95598 1.69959 1.35226 1.31804 1.16822 0.86670 0.86312 0.78310 0.77165 1.20869 1.21384 1.19916 1.22218 0.89822 0.95056 1.00761 0.89051 0.89414 0.89538 0.76784 0.91675 0.92424 0.91484 0.90815 0.95288 0.86913 0.95553 0.90911 0.93369 0.92866 0.93778 0.93124 0.92819 0.93185 0.96952 0.96636 0.93181 0.94976 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.32 36.01 0.37 -0.65 16 2 C 0.51 5.29 7.91 -10.99 -0.09 5.20 16 3 O -0.55 -8.30 16.75 5.56 0.09 -8.20 16 4 N -0.73 -6.56 5.08 -53.73 -0.27 -6.83 16 5 C 0.15 1.67 2.62 -67.85 -0.18 1.49 16 6 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 7 C -0.13 -1.41 5.58 -26.61 -0.15 -1.56 16 8 C -0.12 -1.36 6.09 -26.65 -0.16 -1.53 16 9 C 0.03 0.43 2.97 -3.84 -0.01 0.41 16 10 N -0.53 -7.52 3.85 -234.68 -0.90 -8.42 16 11 C 0.07 1.14 4.52 -3.83 -0.02 1.12 16 12 C -0.06 -1.15 0.53 -154.51 -0.08 -1.23 16 13 C -0.12 -2.30 7.45 37.16 0.28 -2.03 16 14 C -0.15 -2.70 7.08 37.16 0.26 -2.43 16 15 C 0.04 0.90 3.81 -27.89 -0.11 0.80 16 16 C -0.51 -13.76 7.80 -34.44 -0.27 -14.03 16 17 H 0.06 1.54 6.03 -52.49 -0.32 1.22 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.05 0.60 4.94 -3.83 -0.02 0.58 16 25 H 0.09 0.57 8.12 -51.92 -0.42 0.14 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.40 2.42 8.60 -40.82 -0.35 2.07 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.38 7.53 -51.93 -0.39 -0.01 16 34 H 0.11 1.63 3.35 -51.93 -0.17 1.45 16 35 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 36 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 37 H 0.05 0.81 5.13 -51.93 -0.27 0.54 16 38 H 0.05 1.09 6.59 -51.93 -0.34 0.75 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 41 H 0.05 0.99 7.36 -51.93 -0.38 0.61 16 42 H 0.05 0.76 4.11 -51.92 -0.21 0.55 16 43 H 0.01 0.33 8.12 -51.93 -0.42 -0.09 16 44 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -31.90 352.92 -8.58 -40.49 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.27 Total: -0.47 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.26 Total: -12.40 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.44 Total: -41.33 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.90 -8.58 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153950101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.116 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds