Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 C 1.52993 * 109.47018 * 239.99978 * 2 1 3 5 5 C 1.53000 * 109.47074 * 119.99768 * 2 1 3 6 6 N 1.46898 * 109.47413 * 35.64110 * 5 2 1 7 7 C 1.46900 * 110.99890 * 288.50270 * 6 5 2 8 8 C 1.50707 * 109.46953 * 314.85278 * 7 6 5 9 9 H 1.08001 * 119.99779 * 4.69766 * 8 7 6 10 10 C 1.37873 * 120.00263 * 184.70430 * 8 7 6 11 11 N 1.31523 * 119.99840 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00275 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46603 * 89.99795 * 12 10 8 14 14 H 1.48494 * 109.47010 * 210.00026 * 12 10 8 15 15 H 1.48498 * 109.46695 * 329.99899 * 12 10 8 16 16 C 1.46899 * 111.00017 * 52.44822 * 6 5 2 17 17 C 1.53001 * 109.47136 * 60.74995 * 16 6 5 18 18 N 1.46901 * 109.47517 * 180.02562 * 17 16 6 19 19 C 1.46845 * 110.99973 * 45.78900 * 18 17 16 20 20 C 1.53038 * 109.52599 * 185.84292 * 19 18 17 21 21 C 1.53118 * 109.27309 * 300.82084 * 20 19 18 22 22 C 1.53121 * 109.16232 * 57.65727 * 21 20 19 23 23 C 1.46841 * 111.00029 * 169.99918 * 18 17 16 24 24 H 1.09004 * 109.46962 * 298.41217 * 1 2 3 25 25 H 1.08996 * 109.47101 * 58.41005 * 1 2 3 26 26 H 1.08997 * 109.47237 * 178.41863 * 1 2 3 27 27 H 1.08995 * 109.47199 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46818 * 300.00138 * 3 2 1 29 29 H 1.09003 * 109.46887 * 59.99873 * 3 2 1 30 30 H 1.08998 * 109.47328 * 323.24191 * 4 2 1 31 31 H 1.09001 * 109.47413 * 83.24465 * 4 2 1 32 32 H 1.09003 * 109.47479 * 203.24297 * 4 2 1 33 33 H 1.08999 * 109.47138 * 275.63630 * 5 2 1 34 34 H 1.08998 * 109.46611 * 155.63641 * 5 2 1 35 35 H 1.08999 * 109.47453 * 74.84899 * 7 6 5 36 36 H 1.08997 * 109.47553 * 194.85099 * 7 6 5 37 37 H 0.96999 * 119.99652 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47334 * 300.75077 * 16 6 5 39 39 H 1.08998 * 109.47486 * 180.74921 * 16 6 5 40 40 H 1.09001 * 109.46942 * 59.99842 * 17 16 6 41 41 H 1.09002 * 109.47352 * 300.00357 * 17 16 6 42 42 H 1.09007 * 109.46211 * 65.82188 * 19 18 17 43 43 H 1.09005 * 109.46375 * 305.85961 * 19 18 17 44 44 H 1.08996 * 109.50387 * 180.88563 * 20 19 18 45 45 H 1.08991 * 109.50495 * 60.75872 * 20 19 18 46 46 H 1.09008 * 109.52142 * 177.56025 * 21 20 19 47 47 H 1.09000 * 109.52649 * 297.74806 * 21 20 19 48 48 H 1.08992 * 109.50454 * 62.28504 * 22 21 20 49 49 H 1.08998 * 109.50040 * 182.40560 * 22 21 20 50 50 H 1.09001 * 109.46098 * 54.15142 * 23 18 17 51 51 H 1.08998 * 109.46848 * 294.17563 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1421 -1.8385 1.5706 7 6 -0.1421 -1.3493 2.0896 8 6 0.1072 -0.2642 3.1053 9 1 1.1129 0.0852 3.2864 10 6 -0.9486 0.2823 3.8035 11 7 -2.1735 -0.1429 3.5828 12 14 -0.6395 1.6269 5.0630 13 1 -0.7148 2.9533 4.3995 14 1 -1.6670 1.5491 6.1322 15 1 0.7089 1.4468 5.6583 16 6 0.9414 -2.7055 0.4018 17 6 2.2862 -3.2878 -0.0381 18 7 2.0857 -4.1544 -1.2072 19 6 1.2155 -3.5083 -2.1981 20 6 0.9114 -4.4919 -3.3304 21 6 2.2242 -4.9304 -3.9852 22 6 3.1316 -5.5562 -2.9223 23 6 3.3713 -4.5417 -1.8018 24 1 -0.3633 0.4890 0.9039 25 1 -0.3633 0.5383 -0.8754 26 1 -0.3633 -1.0272 -0.0284 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.3848 -1.5623 -1.4760 31 1 2.0471 -0.0289 -2.0911 32 1 3.0514 -1.0864 -1.0706 33 1 2.0659 -0.0236 2.0864 34 1 3.0437 -1.1036 1.0637 35 1 -0.7370 -0.9488 1.2688 36 1 -0.6805 -2.1715 2.5611 37 1 -2.9163 0.2419 4.0737 38 1 0.5137 -2.1226 -0.4139 39 1 0.2623 -3.5169 0.6636 40 1 2.7139 -3.8708 0.7776 41 1 2.9654 -2.4765 -0.2998 42 1 1.7175 -2.6303 -2.6047 43 1 0.2838 -3.2050 -1.7204 44 1 0.2784 -4.0069 -4.0735 45 1 0.3972 -5.3639 -2.9266 46 1 2.0156 -5.6641 -4.7639 47 1 2.7201 -4.0641 -4.4232 48 1 2.6522 -6.4450 -2.5121 49 1 4.0846 -5.8316 -3.3738 50 1 4.0053 -4.9891 -1.0364 51 1 3.8632 -3.6589 -2.2103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157244113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = 61.726511 kcal Electronic energy + Delta-G solvation = -25031.869000 eV Core-core repulsion = 21968.544642 eV Total energy + Delta-G solvation = -3063.324358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21078 -38.36034 -34.07544 -33.66381 -32.17432 -31.00350 -28.98756 -27.71134 -26.73516 -25.94404 -25.27407 -23.55381 -22.96342 -21.24011 -19.87513 -19.78685 -18.06449 -16.63358 -16.26999 -15.42254 -14.97056 -14.79976 -14.41425 -14.28185 -14.14367 -13.88690 -13.55052 -13.18373 -13.01964 -12.67930 -12.50942 -12.32979 -12.17381 -11.91785 -11.60672 -11.37254 -11.05702 -11.00664 -10.93988 -10.78764 -10.71939 -10.64335 -10.63794 -10.42013 -10.34837 -10.19890 -9.96414 -9.83618 -9.52461 -9.45729 -8.83755 -8.41827 -8.01313 -6.76450 -6.01490 -4.00524 3.30641 3.38110 3.41309 4.00094 4.44246 4.76639 4.83040 4.87956 5.12132 5.22202 5.28744 5.34098 5.39532 5.41378 5.42054 5.49535 5.59378 5.59931 5.66478 5.74099 5.84991 5.85422 5.91649 5.97425 6.05740 6.06664 6.11740 6.13792 6.19216 6.20830 6.29062 6.31010 6.35144 6.51618 6.53855 6.58480 6.63361 6.80761 6.85676 6.98912 7.26668 7.28403 7.33165 7.50471 7.57793 7.81384 8.14977 8.34073 8.66632 9.06715 9.61851 11.09390 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.004484 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.532536 B = 6243.225964 C = 6519.137918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.169 4.169 5 C 0.063 3.937 6 N -0.531 5.531 7 C 0.147 3.853 8 C -0.507 4.507 9 H 0.065 0.935 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.889 3.111 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.032 3.968 17 C 0.047 3.953 18 N -0.535 5.535 19 C 0.039 3.961 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.116 4.116 23 C 0.057 3.943 24 H 0.099 0.901 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.878 -5.554 -14.023 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.093 4.093 3 C -0.192 4.192 4 C -0.225 4.225 5 C -0.065 4.065 6 N -0.255 5.255 7 C 0.023 3.977 8 C -0.546 4.546 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.717 3.283 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.096 4.096 17 C -0.080 4.080 18 N -0.261 5.261 19 C -0.088 4.088 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.071 4.071 24 H 0.118 0.882 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.672 -6.251 -13.402 17.143 hybrid contribution 0.150 1.967 -0.115 1.976 sum 8.822 -4.284 -13.517 16.700 Atomic orbital electron populations 1.22963 0.94234 1.02480 1.02346 1.21156 0.96595 0.95372 0.96220 1.21827 0.99723 0.96203 1.01414 1.22962 1.00927 1.01033 0.97612 1.22412 0.94703 0.93294 0.96115 1.62254 1.17028 1.18477 1.27700 1.20830 0.85554 0.95379 0.95956 1.21295 0.93357 1.18813 1.21103 0.91725 1.24942 0.95164 0.97157 0.97023 1.69960 0.98650 1.42629 1.42187 0.86635 0.78013 0.82190 0.81437 1.20823 1.21313 1.19884 1.22666 0.95796 0.97084 0.94088 1.22448 0.98512 0.95023 0.91985 1.61935 1.13670 1.43062 1.07409 1.22464 0.98132 0.95374 0.92874 1.21617 0.97108 0.99892 0.97005 1.21572 0.96389 1.00194 0.97652 1.21574 0.99295 0.98861 0.95624 1.22039 0.90960 0.97502 0.96632 0.88250 0.95610 0.90783 0.93693 0.93837 0.92148 0.90218 0.94161 0.93144 0.88867 0.93506 0.94020 0.95777 0.93030 0.92601 0.91532 0.90670 0.93473 0.93996 0.89920 0.91881 0.91168 0.92172 0.92545 0.91149 0.91999 0.90993 0.95350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 6.18 37.16 0.23 -2.94 16 2 C -0.09 -1.57 0.77 -154.51 -0.12 -1.69 16 3 C -0.13 -2.13 8.23 37.16 0.31 -1.83 16 4 C -0.17 -2.49 6.37 37.15 0.24 -2.25 16 5 C 0.06 1.21 4.54 -3.82 -0.02 1.19 16 6 N -0.53 -11.08 4.90 -236.07 -1.16 -12.24 16 7 C 0.15 3.64 4.24 -4.97 -0.02 3.62 16 8 C -0.51 -13.48 7.29 -34.44 -0.25 -13.73 16 9 H 0.06 1.70 5.49 -52.49 -0.29 1.41 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 12 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.03 0.56 3.30 -3.82 -0.01 0.55 16 17 C 0.05 0.73 4.47 -3.82 -0.02 0.71 16 18 N -0.54 -7.22 4.81 -234.67 -1.13 -8.35 16 19 C 0.04 0.50 3.91 -3.83 -0.01 0.48 16 20 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 21 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16 22 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 23 C 0.06 0.65 5.42 -3.83 -0.02 0.63 16 24 H 0.10 2.29 5.48 -51.93 -0.28 2.01 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.47 3.27 -51.93 -0.17 1.30 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.08 1.16 1.69 -51.93 -0.09 1.07 16 31 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 32 H 0.05 0.72 5.73 -51.93 -0.30 0.42 16 33 H 0.09 1.99 4.95 -51.93 -0.26 1.73 16 34 H 0.05 0.83 6.34 -51.93 -0.33 0.50 16 35 H 0.04 1.05 3.29 -60.58 -0.20 0.85 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.97 1.40 -51.93 -0.07 0.90 16 39 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.72 3.61 -51.93 -0.19 0.53 16 42 H 0.04 0.54 5.93 -51.93 -0.31 0.23 16 43 H 0.08 1.15 5.75 -51.93 -0.30 0.85 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -27.33 343.44 -10.34 -37.68 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.66 Total: 4.42 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.78 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.55 Total: -45.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.33 -10.34 -37.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157244113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.402 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds