Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 C 1.52993 * 109.47018 * 239.99978 * 2 1 3 5 5 C 1.53000 * 109.47074 * 119.99768 * 2 1 3 6 6 N 1.46898 * 109.47413 * 35.64110 * 5 2 1 7 7 C 1.46900 * 110.99890 * 288.50270 * 6 5 2 8 8 C 1.50707 * 109.46953 * 314.85278 * 7 6 5 9 9 H 1.08001 * 119.99779 * 4.69766 * 8 7 6 10 10 C 1.37873 * 120.00263 * 184.70430 * 8 7 6 11 11 N 1.31523 * 119.99840 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00275 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46603 * 89.99795 * 12 10 8 14 14 H 1.48494 * 109.47010 * 210.00026 * 12 10 8 15 15 H 1.48498 * 109.46695 * 329.99899 * 12 10 8 16 16 C 1.46899 * 111.00017 * 52.44822 * 6 5 2 17 17 C 1.53001 * 109.47136 * 60.74995 * 16 6 5 18 18 N 1.46901 * 109.47517 * 180.02562 * 17 16 6 19 19 C 1.46845 * 110.99973 * 45.78900 * 18 17 16 20 20 C 1.53038 * 109.52599 * 185.84292 * 19 18 17 21 21 C 1.53118 * 109.27309 * 300.82084 * 20 19 18 22 22 C 1.53121 * 109.16232 * 57.65727 * 21 20 19 23 23 C 1.46841 * 111.00029 * 169.99918 * 18 17 16 24 24 H 1.09004 * 109.46962 * 298.41217 * 1 2 3 25 25 H 1.08996 * 109.47101 * 58.41005 * 1 2 3 26 26 H 1.08997 * 109.47237 * 178.41863 * 1 2 3 27 27 H 1.08995 * 109.47199 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46818 * 300.00138 * 3 2 1 29 29 H 1.09003 * 109.46887 * 59.99873 * 3 2 1 30 30 H 1.08998 * 109.47328 * 323.24191 * 4 2 1 31 31 H 1.09001 * 109.47413 * 83.24465 * 4 2 1 32 32 H 1.09003 * 109.47479 * 203.24297 * 4 2 1 33 33 H 1.08999 * 109.47138 * 275.63630 * 5 2 1 34 34 H 1.08998 * 109.46611 * 155.63641 * 5 2 1 35 35 H 1.08999 * 109.47453 * 74.84899 * 7 6 5 36 36 H 1.08997 * 109.47553 * 194.85099 * 7 6 5 37 37 H 0.96999 * 119.99652 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47334 * 300.75077 * 16 6 5 39 39 H 1.08998 * 109.47486 * 180.74921 * 16 6 5 40 40 H 1.09001 * 109.46942 * 59.99842 * 17 16 6 41 41 H 1.09002 * 109.47352 * 300.00357 * 17 16 6 42 42 H 1.09007 * 109.46211 * 65.82188 * 19 18 17 43 43 H 1.09005 * 109.46375 * 305.85961 * 19 18 17 44 44 H 1.08996 * 109.50387 * 180.88563 * 20 19 18 45 45 H 1.08991 * 109.50495 * 60.75872 * 20 19 18 46 46 H 1.09008 * 109.52142 * 177.56025 * 21 20 19 47 47 H 1.09000 * 109.52649 * 297.74806 * 21 20 19 48 48 H 1.08992 * 109.50454 * 62.28504 * 22 21 20 49 49 H 1.08998 * 109.50040 * 182.40560 * 22 21 20 50 50 H 1.09001 * 109.46098 * 54.15142 * 23 18 17 51 51 H 1.08998 * 109.46848 * 294.17563 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1421 -1.8385 1.5706 7 6 -0.1421 -1.3493 2.0896 8 6 0.1072 -0.2642 3.1053 9 1 1.1129 0.0852 3.2864 10 6 -0.9486 0.2823 3.8035 11 7 -2.1735 -0.1429 3.5828 12 14 -0.6395 1.6269 5.0630 13 1 -0.7148 2.9533 4.3995 14 1 -1.6670 1.5491 6.1322 15 1 0.7089 1.4468 5.6583 16 6 0.9414 -2.7055 0.4018 17 6 2.2862 -3.2878 -0.0381 18 7 2.0857 -4.1544 -1.2072 19 6 1.2155 -3.5083 -2.1981 20 6 0.9114 -4.4919 -3.3304 21 6 2.2242 -4.9304 -3.9852 22 6 3.1316 -5.5562 -2.9223 23 6 3.3713 -4.5417 -1.8018 24 1 -0.3633 0.4890 0.9039 25 1 -0.3633 0.5383 -0.8754 26 1 -0.3633 -1.0272 -0.0284 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.3848 -1.5623 -1.4760 31 1 2.0471 -0.0289 -2.0911 32 1 3.0514 -1.0864 -1.0706 33 1 2.0659 -0.0236 2.0864 34 1 3.0437 -1.1036 1.0637 35 1 -0.7370 -0.9488 1.2688 36 1 -0.6805 -2.1715 2.5611 37 1 -2.9163 0.2419 4.0737 38 1 0.5137 -2.1226 -0.4139 39 1 0.2623 -3.5169 0.6636 40 1 2.7139 -3.8708 0.7776 41 1 2.9654 -2.4765 -0.2998 42 1 1.7175 -2.6303 -2.6047 43 1 0.2838 -3.2050 -1.7204 44 1 0.2784 -4.0069 -4.0735 45 1 0.3972 -5.3639 -2.9266 46 1 2.0156 -5.6641 -4.7639 47 1 2.7201 -4.0641 -4.4232 48 1 2.6522 -6.4450 -2.5121 49 1 4.0846 -5.8316 -3.3738 50 1 4.0053 -4.9891 -1.0364 51 1 3.8632 -3.6589 -2.2103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157244113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = 44.617997 kcal Electronic energy + Delta-G solvation = -25032.610881 eV Core-core repulsion = 21968.544642 eV Total energy + Delta-G solvation = -3064.066239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61608 -39.48326 -35.44358 -35.18488 -33.90761 -31.92958 -30.49582 -29.25777 -27.98178 -27.68908 -26.66963 -24.91614 -23.90530 -22.77002 -21.37480 -20.73695 -19.45065 -18.54116 -17.53359 -16.91470 -16.62259 -16.01206 -15.68581 -15.54774 -15.40962 -15.19519 -14.90142 -14.29695 -14.25579 -14.15120 -13.87020 -13.64343 -13.36448 -13.27046 -12.98539 -12.84918 -12.68904 -12.45541 -12.34602 -12.26396 -12.18544 -11.99320 -11.78728 -11.75262 -11.64434 -11.49812 -11.30043 -11.17514 -11.08513 -10.96992 -10.72620 -10.50565 -9.08536 -8.46478 -8.13658 -6.18414 1.40140 1.41794 1.51632 2.42586 2.91089 3.20317 3.62263 3.90592 3.93896 3.96007 4.01330 4.07756 4.09135 4.19927 4.31455 4.40968 4.53468 4.55347 4.63980 4.69508 4.71209 4.73298 4.81883 4.85696 4.87423 4.91831 4.97807 4.98203 5.01402 5.08321 5.11474 5.16779 5.17125 5.23229 5.26984 5.30359 5.34946 5.38818 5.49285 5.53109 5.54322 5.64325 5.73557 5.74930 6.12685 6.19805 6.27309 6.50330 6.83979 6.99218 7.48172 8.97885 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.004484 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.532536 B = 6243.225964 C = 6519.137918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.161 4.161 5 C 0.066 3.934 6 N -0.544 5.544 7 C 0.162 3.838 8 C -0.511 4.511 9 H 0.066 0.934 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.953 3.047 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.268 1.268 16 C 0.038 3.962 17 C 0.062 3.938 18 N -0.545 5.545 19 C 0.040 3.960 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.112 4.112 23 C 0.054 3.946 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.041 0.959 36 H -0.021 1.021 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.010 -5.140 -16.032 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 C -0.188 4.188 4 C -0.217 4.217 5 C -0.062 4.062 6 N -0.267 5.267 7 C 0.036 3.964 8 C -0.549 4.549 9 H 0.084 0.916 10 C -0.191 4.191 11 N -0.572 5.572 12 Si 0.779 3.221 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.089 4.089 17 C -0.065 4.065 18 N -0.270 5.270 19 C -0.088 4.088 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.058 0.942 36 H -0.003 1.003 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.829 -5.842 -15.426 19.732 hybrid contribution -0.513 1.783 0.477 1.916 sum 10.316 -4.059 -14.950 18.612 Atomic orbital electron populations 1.22737 0.96144 1.01380 1.00920 1.21085 0.94802 0.96564 0.96529 1.21788 1.00993 0.94901 1.01151 1.22859 1.01205 1.01093 0.96586 1.22376 0.95183 0.92368 0.96251 1.62099 1.15282 1.19513 1.29812 1.20542 0.87128 0.93184 0.95515 1.21586 0.93382 1.18855 1.21096 0.91585 1.25729 0.94918 0.99403 0.99014 1.70091 0.99503 1.44164 1.43485 0.85624 0.77905 0.79641 0.78936 1.19929 1.21319 1.19231 1.22629 0.97242 0.95935 0.93115 1.22203 0.96470 0.95205 0.92664 1.61919 1.15148 1.42591 1.07379 1.22449 0.97065 0.96187 0.93094 1.21616 0.98193 0.99114 0.96554 1.21568 0.95387 1.00795 0.97746 1.21570 1.00384 0.97957 0.95102 1.22139 0.89783 0.98178 0.97229 0.92385 0.93955 0.91955 0.91644 0.92313 0.94234 0.90331 0.92381 0.92089 0.91392 0.91440 0.94227 1.00313 0.93102 0.91640 0.93827 0.91800 0.92717 0.93489 0.91890 0.90681 0.92036 0.90654 0.91970 0.91867 0.89976 0.90879 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.04 6.18 71.98 0.44 -5.60 16 2 C -0.09 -2.90 0.77 -52.18 -0.04 -2.94 16 3 C -0.13 -3.89 8.23 71.98 0.59 -3.30 16 4 C -0.16 -4.29 6.37 71.98 0.46 -3.83 16 5 C 0.07 2.50 4.54 86.30 0.39 2.89 16 6 N -0.54 -23.28 4.90 -900.80 -4.42 -27.69 16 7 C 0.16 8.41 4.24 85.56 0.36 8.77 16 8 C -0.51 -28.06 7.29 25.60 0.19 -27.87 16 9 H 0.07 3.56 5.49 -2.91 -0.02 3.54 16 10 C 0.01 0.41 5.46 84.65 0.46 0.87 16 11 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 12 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 C 0.04 1.39 3.30 86.30 0.29 1.67 16 17 C 0.06 1.84 4.47 86.30 0.39 2.23 16 18 N -0.54 -13.98 4.81 -896.35 -4.31 -18.28 16 19 C 0.04 0.94 3.91 86.33 0.34 1.28 16 20 C -0.12 -2.27 6.09 30.65 0.19 -2.08 16 21 C -0.12 -1.87 6.00 30.67 0.18 -1.68 16 22 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 23 C 0.05 1.12 5.42 86.33 0.47 1.59 16 24 H 0.06 2.76 5.48 -2.38 -0.01 2.74 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 2.55 3.27 -2.39 -0.01 2.54 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 30 H 0.08 2.12 1.69 -2.39 0.00 2.12 16 31 H 0.06 1.37 7.92 -2.39 -0.02 1.35 16 32 H 0.06 1.52 5.73 -2.39 -0.01 1.51 16 33 H 0.07 2.91 4.95 -2.39 -0.01 2.90 16 34 H 0.07 2.26 6.34 -2.39 -0.02 2.25 16 35 H 0.04 2.11 3.29 -10.51 -0.03 2.08 16 36 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.07 2.28 1.40 -2.39 0.00 2.28 16 39 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.54 3.61 -2.39 -0.01 1.53 16 42 H 0.05 1.08 5.93 -2.38 -0.01 1.06 16 43 H 0.06 1.74 5.75 -2.38 -0.01 1.72 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 51 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -60.80 343.44 -0.64 -61.44 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.88 Total: 23.35 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 4.89 Total: -29.70 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -8.44 Total: -101.34 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.80 -0.64 -61.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157244113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.057 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds