Wall clock time and date at job start Tue Mar 31 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52994 * 109.47035 * 119.99990 * 2 1 3 5 5 N 1.46905 * 109.47082 * 175.00178 * 4 2 1 6 6 C 1.46955 * 111.00128 * 169.99669 * 5 4 2 7 7 C 1.53050 * 109.36554 * 183.18695 * 6 5 4 8 8 N 1.46965 * 109.36388 * 301.60051 * 7 6 5 9 9 C 1.46904 * 110.99933 * 183.18388 * 8 7 6 10 10 C 1.53001 * 109.46726 * 86.60189 * 9 8 7 11 11 C 1.53010 * 109.47026 * 54.30809 * 10 9 8 12 12 C 1.53003 * 109.47471 * 294.31037 * 10 9 8 13 13 C 1.52999 * 109.47223 * 174.30574 * 10 9 8 14 14 C 1.50695 * 109.47487 * 180.02562 * 13 10 9 15 15 H 1.08004 * 119.99878 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00056 * 180.02562 * 14 13 10 17 17 N 1.31515 * 120.00446 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47156 * 59.99970 * 18 16 14 20 20 H 1.48498 * 109.47178 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47440 * 300.00182 * 18 16 14 22 22 C 1.46952 * 110.87818 * 59.32071 * 8 7 6 23 23 C 1.46956 * 110.99929 * 293.79860 * 5 4 2 24 24 H 1.09002 * 109.46888 * 299.99790 * 1 2 3 25 25 H 1.08994 * 109.46849 * 60.00326 * 1 2 3 26 26 H 1.09003 * 109.46635 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47016 * 239.99712 * 2 1 3 28 28 H 1.08998 * 109.47498 * 60.00007 * 3 2 1 29 29 H 1.09002 * 109.46977 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46936 * 299.99920 * 3 2 1 31 31 H 1.09000 * 109.47515 * 55.00153 * 4 2 1 32 32 H 1.09005 * 109.47102 * 294.99807 * 4 2 1 33 33 H 1.09002 * 109.48845 * 63.22163 * 6 5 4 34 34 H 1.08996 * 109.49410 * 303.15514 * 6 5 4 35 35 H 1.08996 * 109.49447 * 181.63509 * 7 6 5 36 36 H 1.09001 * 109.48933 * 61.56700 * 7 6 5 37 37 H 1.08999 * 109.47304 * 326.60755 * 9 8 7 38 38 H 1.08990 * 109.46964 * 206.60166 * 9 8 7 39 39 H 1.08996 * 109.46925 * 184.98953 * 11 10 9 40 40 H 1.08994 * 109.46872 * 304.98642 * 11 10 9 41 41 H 1.09003 * 109.46947 * 64.98773 * 11 10 9 42 42 H 1.09003 * 109.46553 * 316.54754 * 12 10 9 43 43 H 1.08991 * 109.47425 * 76.54635 * 12 10 9 44 44 H 1.08999 * 109.47106 * 196.55308 * 12 10 9 45 45 H 1.09004 * 109.47103 * 300.00857 * 13 10 9 46 46 H 1.09002 * 109.46994 * 59.99862 * 13 10 9 47 47 H 0.96994 * 120.00392 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.49160 * 60.64555 * 22 8 7 49 49 H 1.09005 * 109.49031 * 180.71426 * 22 8 7 50 50 H 1.09001 * 109.48678 * 296.77893 * 23 5 4 51 51 H 1.09007 * 109.48970 * 56.83931 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0502 -1.2966 2.4712 7 6 5.5786 -1.3167 2.3945 8 7 5.9997 -2.1930 1.2924 9 6 7.4638 -2.2984 1.2335 10 6 7.9323 -3.4177 2.1653 11 6 7.1993 -4.7141 1.8141 12 6 7.6269 -3.0359 3.6151 13 6 9.4393 -3.6229 1.9986 14 6 9.9008 -4.7258 2.9159 15 1 9.1902 -5.2304 3.5538 16 6 11.2301 -5.0907 2.9409 17 7 12.0954 -4.4767 2.1638 18 14 11.8022 -6.4574 4.0785 19 1 11.0911 -7.7157 3.7373 20 1 13.2651 -6.6557 3.9174 21 1 11.5054 -6.0871 5.4856 22 6 5.4536 -1.7230 0.0116 23 6 3.9252 -1.7028 0.0883 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1582 2.1370 33 1 3.6831 -2.3023 2.6759 34 1 3.7350 -0.6247 3.2695 35 1 5.9851 -1.6926 3.3334 36 1 5.9472 -0.3064 2.2169 37 1 7.9089 -1.3542 1.5473 38 1 7.7710 -2.5233 0.2122 39 1 7.4663 -5.4886 2.5330 40 1 6.1233 -4.5433 1.8470 41 1 7.4861 -5.0336 0.8122 42 1 7.8931 -1.9917 3.7795 43 1 6.5639 -3.1751 3.8113 44 1 8.2064 -3.6687 4.2873 45 1 9.6569 -3.8948 0.9657 46 1 9.9616 -2.6994 2.2487 47 1 13.0306 -4.7332 2.1816 48 1 5.8207 -0.7172 -0.1931 49 1 5.7688 -2.3950 -0.7867 50 1 3.5567 -2.7132 0.2660 51 1 3.5188 -1.3270 -0.8507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162413849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:11 Heat of formation + Delta-G solvation = -11.478304 kcal Electronic energy + Delta-G solvation = -23679.923354 eV Core-core repulsion = 20613.424596 eV Total energy + Delta-G solvation = -3066.498757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.56607 -37.54304 -35.62448 -33.49357 -32.08634 -30.86855 -28.22892 -27.30366 -26.88344 -26.33518 -25.24667 -23.45374 -23.44297 -22.13245 -20.09258 -19.56094 -17.86047 -16.27117 -16.16560 -15.48920 -15.07638 -14.86351 -14.81623 -14.47648 -14.14958 -14.01948 -13.55503 -13.09658 -12.86775 -12.68387 -12.54815 -12.38072 -12.32320 -11.98765 -11.88732 -11.53301 -11.39858 -11.20978 -11.14319 -11.00276 -10.89739 -10.74740 -10.69595 -10.57059 -10.49454 -10.27902 -10.24615 -9.89770 -9.57609 -8.91321 -8.82880 -8.37289 -8.28121 -7.88242 -5.92978 -3.92772 3.36635 3.41173 3.43497 3.80437 4.21109 4.52171 4.56288 4.74228 4.90089 5.00523 5.17168 5.21390 5.34125 5.39684 5.41916 5.42628 5.44862 5.50662 5.58226 5.62801 5.68808 5.74190 5.78127 5.82235 5.88759 5.91209 6.01118 6.08134 6.10309 6.13013 6.15606 6.23274 6.33288 6.38474 6.60131 6.75997 6.84105 6.91076 6.99525 7.00433 7.28331 7.30615 7.33916 7.46078 7.54933 7.75075 7.91089 8.07706 8.52732 9.12525 9.69613 11.18699 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.046023 B = 0.003040 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.250549 B = 9209.595483 C = 9335.780489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.059 3.941 7 C 0.044 3.956 8 N -0.531 5.531 9 C 0.066 3.934 10 C -0.051 4.051 11 C -0.113 4.113 12 C -0.132 4.132 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.057 3.943 23 C 0.058 3.942 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.040 0.960 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.934 9.246 -3.517 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.194 4.194 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.069 4.069 7 C -0.084 4.084 8 N -0.256 5.256 9 C -0.061 4.061 10 C -0.052 4.052 11 C -0.170 4.170 12 C -0.189 4.189 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.072 4.072 23 C -0.070 4.070 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.094 0.906 50 H 0.058 0.942 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.739 9.252 -3.563 22.987 hybrid contribution 0.492 -0.722 0.545 1.030 sum -20.247 8.530 -3.018 22.177 Atomic orbital electron populations 1.21824 0.95335 1.01536 1.01770 1.21144 0.94926 0.97214 0.98058 1.21708 1.02247 0.94860 1.00620 1.22155 0.87498 0.98684 0.98449 1.62155 1.09258 1.50438 1.04399 1.22158 0.95274 0.98614 0.90836 1.22560 0.93925 0.95092 0.96854 1.62162 1.11420 1.49121 1.02853 1.22322 0.84898 0.98408 1.00446 1.20556 0.98190 0.93253 0.93166 1.21564 0.98380 0.96882 1.00183 1.21974 0.99152 0.99963 0.97777 1.19135 0.87787 0.96603 0.96911 1.21199 0.92908 1.17964 1.22290 0.92352 1.25014 0.97080 0.96644 0.95873 1.69954 1.02810 1.41903 1.39162 0.86735 0.77485 0.82813 0.81413 1.20344 1.21476 1.20372 1.22161 0.93688 0.98708 0.92610 1.22191 0.95550 0.94878 0.94429 0.92732 0.92598 0.92914 0.91182 0.93247 0.91478 0.93620 0.95044 0.91033 0.94163 0.90896 0.88449 0.94751 0.94854 0.91848 0.93181 0.93601 0.94483 0.94598 0.94104 0.91491 0.96824 0.96992 0.93145 0.94630 0.90582 0.94196 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.78 2.85 -90.62 -0.26 -1.04 16 3 C -0.14 -1.16 9.08 37.16 0.34 -0.82 16 4 C 0.06 0.56 4.35 -3.82 -0.02 0.55 16 5 N -0.54 -6.00 4.16 -234.46 -0.98 -6.98 16 6 C 0.06 0.70 5.61 -3.77 -0.02 0.68 16 7 C 0.04 0.60 5.12 -3.76 -0.02 0.58 16 8 N -0.53 -7.97 3.45 -234.46 -0.81 -8.78 16 9 C 0.07 1.17 4.22 -3.82 -0.02 1.15 16 10 C -0.05 -1.03 0.61 -154.50 -0.09 -1.12 16 11 C -0.11 -2.22 7.92 37.16 0.29 -1.93 16 12 C -0.13 -2.49 6.92 37.16 0.26 -2.24 16 13 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 14 C -0.51 -13.91 7.47 -34.44 -0.26 -14.16 16 15 H 0.06 1.57 5.83 -52.48 -0.31 1.26 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.06 0.75 5.49 -3.77 -0.02 0.73 16 23 C 0.06 0.66 5.42 -3.77 -0.02 0.64 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.61 6.28 -51.93 -0.33 0.28 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.10 1.40 4.20 -51.93 -0.22 1.18 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.03 0.60 7.72 -51.93 -0.40 0.20 16 38 H 0.06 1.13 7.67 -51.93 -0.40 0.74 16 39 H 0.05 1.05 6.79 -51.93 -0.35 0.69 16 40 H 0.04 0.83 7.28 -51.93 -0.38 0.45 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.64 7.53 -51.93 -0.39 0.25 16 43 H 0.04 0.69 6.43 -51.93 -0.33 0.35 16 44 H 0.07 1.41 6.26 -51.93 -0.33 1.08 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.98 7.98 -51.93 -0.41 0.57 16 50 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.76 6.25 -51.92 -0.32 0.44 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -28.79 373.68 -10.18 -38.97 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -10.04 Total: -3.78 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 0.30 Total: -15.47 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -1.05 Total: -42.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.79 -10.18 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162413849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.487 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds