Wall clock time and date at job start Tue Mar 31 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52994 * 109.47035 * 119.99990 * 2 1 3 5 5 N 1.46905 * 109.47082 * 175.00178 * 4 2 1 6 6 C 1.46955 * 111.00128 * 169.99669 * 5 4 2 7 7 C 1.53050 * 109.36554 * 183.18695 * 6 5 4 8 8 N 1.46965 * 109.36388 * 301.60051 * 7 6 5 9 9 C 1.46904 * 110.99933 * 183.18388 * 8 7 6 10 10 C 1.53001 * 109.46726 * 86.60189 * 9 8 7 11 11 C 1.53010 * 109.47026 * 54.30809 * 10 9 8 12 12 C 1.53003 * 109.47471 * 294.31037 * 10 9 8 13 13 C 1.52999 * 109.47223 * 174.30574 * 10 9 8 14 14 C 1.50695 * 109.47487 * 180.02562 * 13 10 9 15 15 H 1.08004 * 119.99878 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00056 * 180.02562 * 14 13 10 17 17 N 1.31515 * 120.00446 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47156 * 59.99970 * 18 16 14 20 20 H 1.48498 * 109.47178 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47440 * 300.00182 * 18 16 14 22 22 C 1.46952 * 110.87818 * 59.32071 * 8 7 6 23 23 C 1.46956 * 110.99929 * 293.79860 * 5 4 2 24 24 H 1.09002 * 109.46888 * 299.99790 * 1 2 3 25 25 H 1.08994 * 109.46849 * 60.00326 * 1 2 3 26 26 H 1.09003 * 109.46635 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47016 * 239.99712 * 2 1 3 28 28 H 1.08998 * 109.47498 * 60.00007 * 3 2 1 29 29 H 1.09002 * 109.46977 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46936 * 299.99920 * 3 2 1 31 31 H 1.09000 * 109.47515 * 55.00153 * 4 2 1 32 32 H 1.09005 * 109.47102 * 294.99807 * 4 2 1 33 33 H 1.09002 * 109.48845 * 63.22163 * 6 5 4 34 34 H 1.08996 * 109.49410 * 303.15514 * 6 5 4 35 35 H 1.08996 * 109.49447 * 181.63509 * 7 6 5 36 36 H 1.09001 * 109.48933 * 61.56700 * 7 6 5 37 37 H 1.08999 * 109.47304 * 326.60755 * 9 8 7 38 38 H 1.08990 * 109.46964 * 206.60166 * 9 8 7 39 39 H 1.08996 * 109.46925 * 184.98953 * 11 10 9 40 40 H 1.08994 * 109.46872 * 304.98642 * 11 10 9 41 41 H 1.09003 * 109.46947 * 64.98773 * 11 10 9 42 42 H 1.09003 * 109.46553 * 316.54754 * 12 10 9 43 43 H 1.08991 * 109.47425 * 76.54635 * 12 10 9 44 44 H 1.08999 * 109.47106 * 196.55308 * 12 10 9 45 45 H 1.09004 * 109.47103 * 300.00857 * 13 10 9 46 46 H 1.09002 * 109.46994 * 59.99862 * 13 10 9 47 47 H 0.96994 * 120.00392 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.49160 * 60.64555 * 22 8 7 49 49 H 1.09005 * 109.49031 * 180.71426 * 22 8 7 50 50 H 1.09001 * 109.48678 * 296.77893 * 23 5 4 51 51 H 1.09007 * 109.48970 * 56.83931 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0502 -1.2966 2.4712 7 6 5.5786 -1.3167 2.3945 8 7 5.9997 -2.1930 1.2924 9 6 7.4638 -2.2984 1.2335 10 6 7.9323 -3.4177 2.1653 11 6 7.1993 -4.7141 1.8141 12 6 7.6269 -3.0359 3.6151 13 6 9.4393 -3.6229 1.9986 14 6 9.9008 -4.7258 2.9159 15 1 9.1902 -5.2304 3.5538 16 6 11.2301 -5.0907 2.9409 17 7 12.0954 -4.4767 2.1638 18 14 11.8022 -6.4574 4.0785 19 1 11.0911 -7.7157 3.7373 20 1 13.2651 -6.6557 3.9174 21 1 11.5054 -6.0871 5.4856 22 6 5.4536 -1.7230 0.0116 23 6 3.9252 -1.7028 0.0883 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1582 2.1370 33 1 3.6831 -2.3023 2.6759 34 1 3.7350 -0.6247 3.2695 35 1 5.9851 -1.6926 3.3334 36 1 5.9472 -0.3064 2.2169 37 1 7.9089 -1.3542 1.5473 38 1 7.7710 -2.5233 0.2122 39 1 7.4663 -5.4886 2.5330 40 1 6.1233 -4.5433 1.8470 41 1 7.4861 -5.0336 0.8122 42 1 7.8931 -1.9917 3.7795 43 1 6.5639 -3.1751 3.8113 44 1 8.2064 -3.6687 4.2873 45 1 9.6569 -3.8948 0.9657 46 1 9.9616 -2.6994 2.2487 47 1 13.0306 -4.7332 2.1816 48 1 5.8207 -0.7172 -0.1931 49 1 5.7688 -2.3950 -0.7867 50 1 3.5567 -2.7132 0.2660 51 1 3.5188 -1.3270 -0.8507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162413849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:11 Heat of formation + Delta-G solvation = -27.184889 kcal Electronic energy + Delta-G solvation = -23680.604442 eV Core-core repulsion = 20613.424596 eV Total energy + Delta-G solvation = -3067.179846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65552 -38.78453 -36.79694 -34.83357 -33.87921 -31.91139 -29.50658 -28.73376 -27.92296 -27.88401 -26.52214 -24.92078 -24.47411 -23.61911 -20.90357 -20.48356 -19.53978 -18.30446 -17.26737 -16.61298 -16.25980 -16.13164 -15.91467 -15.80844 -15.35948 -15.02586 -14.81160 -14.41472 -14.25857 -14.01133 -13.89391 -13.60817 -13.44133 -13.08257 -12.94890 -12.73841 -12.69309 -12.65803 -12.47929 -12.29891 -12.23434 -12.09615 -11.95797 -11.90103 -11.74243 -11.66583 -11.51798 -11.29241 -11.21925 -10.85007 -10.58771 -10.48572 -9.29045 -9.10911 -8.12682 -6.19521 1.41166 1.43468 1.50764 2.44419 2.94298 3.02052 3.20902 3.85777 3.95458 4.04138 4.10183 4.21564 4.24222 4.31846 4.40972 4.43168 4.46116 4.51447 4.60443 4.71479 4.73734 4.78400 4.81984 4.86811 4.88868 4.92388 4.95457 4.98936 5.05659 5.08658 5.10474 5.15813 5.17527 5.24760 5.26101 5.31836 5.48813 5.54191 5.55443 5.56015 5.63399 5.69502 5.89106 5.94667 6.06712 6.08893 6.25435 6.29297 6.39936 6.95253 7.47411 8.99479 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.046023 B = 0.003040 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.250549 B = 9209.595483 C = 9335.780489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.133 4.133 4 C 0.062 3.938 5 N -0.543 5.543 6 C 0.065 3.935 7 C 0.045 3.955 8 N -0.532 5.532 9 C 0.078 3.922 10 C -0.047 4.047 11 C -0.101 4.101 12 C -0.122 4.122 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.057 3.943 23 C 0.065 3.935 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.039 0.961 43 H 0.066 0.934 44 H 0.043 0.957 45 H -0.017 1.017 46 H -0.017 1.017 47 H 0.259 0.741 48 H 0.031 0.969 49 H 0.077 0.923 50 H 0.034 0.966 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.278 9.158 -2.859 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.190 4.190 4 C -0.065 4.065 5 N -0.268 5.268 6 C -0.063 4.063 7 C -0.083 4.083 8 N -0.257 5.257 9 C -0.050 4.050 10 C -0.048 4.048 11 C -0.159 4.159 12 C -0.179 4.179 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.193 1.193 22 C -0.071 4.071 23 C -0.063 4.063 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.002 0.998 46 H 0.001 0.999 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.095 0.905 50 H 0.053 0.947 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.113 9.167 -2.901 25.033 hybrid contribution 1.200 -0.636 0.298 1.390 sum -21.913 8.530 -2.603 23.658 Atomic orbital electron populations 1.21788 0.94133 1.01878 1.02302 1.21126 0.95872 0.96769 0.97307 1.21659 1.01069 0.95188 1.01116 1.22193 0.86119 0.98916 0.99297 1.62170 1.10572 1.50136 1.03929 1.22095 0.93576 0.98881 0.91734 1.22560 0.95495 0.94320 0.95960 1.62108 1.09260 1.50012 1.04280 1.22033 0.86941 0.96883 0.99140 1.20418 0.94638 0.94783 0.94946 1.21448 0.99460 0.95880 0.99066 1.21866 1.00366 0.99663 0.95972 1.19015 0.91418 0.94666 0.94647 1.21570 0.93193 1.18106 1.22202 0.91683 1.25918 0.97414 0.99254 0.97541 1.70101 1.03107 1.43739 1.41023 0.85641 0.76880 0.79807 0.79576 1.19367 1.21357 1.19263 1.22211 0.94988 0.98365 0.91585 1.22118 0.93969 0.94801 0.95387 0.92314 0.91995 0.92676 0.91558 0.93017 0.93164 0.92902 0.95043 0.90428 0.94578 0.89294 0.88965 0.95381 0.95628 0.92616 0.94575 0.91447 0.95469 0.94146 0.91519 0.93753 0.99825 0.99902 0.93179 0.95060 0.90478 0.94736 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.31 2.85 -10.79 -0.03 -1.34 16 3 C -0.13 -1.99 9.08 71.98 0.65 -1.34 16 4 C 0.06 1.01 4.35 86.30 0.38 1.39 16 5 N -0.54 -10.96 4.16 -895.71 -3.73 -14.69 16 6 C 0.07 1.40 5.61 86.31 0.48 1.88 16 7 C 0.04 1.16 5.12 86.31 0.44 1.60 16 8 N -0.53 -15.39 3.45 -895.71 -3.09 -18.49 16 9 C 0.08 2.76 4.22 86.30 0.36 3.12 16 10 C -0.05 -1.92 0.61 -52.18 -0.03 -1.95 16 11 C -0.10 -3.93 7.92 71.99 0.57 -3.36 16 12 C -0.12 -4.53 6.92 71.98 0.50 -4.03 16 13 C 0.04 2.11 4.04 29.85 0.12 2.23 16 14 C -0.51 -28.68 7.47 25.60 0.19 -28.49 16 15 H 0.07 3.49 5.83 -2.91 -0.02 3.48 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 18 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.06 1.42 5.49 86.31 0.47 1.90 16 23 C 0.07 1.37 5.42 86.31 0.47 1.83 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.07 1.00 6.28 -2.39 -0.02 0.99 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.03 0.52 8.12 -2.39 -0.02 0.51 16 32 H 0.08 1.18 8.03 -2.38 -0.02 1.17 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.09 2.48 4.20 -2.39 -0.01 2.47 16 36 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 37 H 0.03 0.93 7.72 -2.39 -0.02 0.92 16 38 H 0.06 2.03 7.67 -2.39 -0.02 2.02 16 39 H 0.04 1.48 6.79 -2.39 -0.02 1.46 16 40 H 0.07 2.32 7.28 -2.39 -0.02 2.30 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.04 1.44 7.53 -2.39 -0.02 1.42 16 43 H 0.07 2.13 6.43 -2.39 -0.02 2.11 16 44 H 0.04 1.84 6.26 -2.39 -0.01 1.82 16 45 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.08 1.91 7.98 -2.38 -0.02 1.89 16 50 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.09 1.64 6.25 -2.38 -0.01 1.62 16 Total: -1.00 -62.23 373.68 2.04 -60.19 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.85 Total: 11.08 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 5.70 Total: -27.31 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -6.54 Total: -90.81 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.23 2.04 -60.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162413849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.007 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds