Wall clock time and date at job start Tue Mar 31 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46961 * 2 1 4 4 C 1.46496 * 120.00352 * 270.00003 * 3 2 1 5 5 C 1.50704 * 109.47056 * 270.00510 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99695 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00292 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00315 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00367 * 9 7 5 12 12 H 1.48496 * 109.47104 * 330.00541 * 9 7 5 13 13 C 1.34776 * 119.99801 * 90.00424 * 3 2 1 14 14 O 1.21282 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46895 * 110.99789 * 179.97438 * 16 15 13 18 18 H 1.08996 * 109.47174 * 35.00122 * 17 16 15 19 19 C 1.52995 * 109.47235 * 274.99821 * 17 16 15 20 20 C 1.52998 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47283 * 60.00211 * 20 19 17 22 22 C 1.53002 * 109.46896 * 299.99704 * 21 20 19 23 23 C 1.52998 * 109.46912 * 60.00069 * 22 21 20 24 24 H 1.08995 * 109.47334 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47249 * 60.00076 * 23 22 21 26 26 H 1.09000 * 109.46892 * 299.99690 * 1 2 3 27 27 H 1.08998 * 109.46794 * 60.00269 * 1 2 3 28 28 H 1.09009 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46892 * 240.00310 * 2 1 3 30 30 H 1.09002 * 109.46990 * 120.00456 * 2 1 3 31 31 H 1.09002 * 109.47248 * 30.00186 * 4 3 2 32 32 H 1.09000 * 109.47481 * 150.00438 * 4 3 2 33 33 H 0.97000 * 120.00234 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.46894 * 60.00096 * 15 13 3 35 35 H 1.09004 * 109.47113 * 300.00247 * 15 13 3 36 36 H 1.00899 * 110.99484 * 303.95639 * 16 15 13 37 37 H 1.09009 * 109.47420 * 300.00084 * 19 17 16 38 38 H 1.09002 * 109.47368 * 60.00254 * 19 17 16 39 39 H 1.08998 * 109.47313 * 299.99781 * 20 19 17 40 40 H 1.09002 * 109.47139 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47050 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47239 * 60.00097 * 21 20 19 43 43 H 1.08996 * 109.47498 * 300.00234 * 22 21 20 44 44 H 1.08998 * 109.47130 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.47153 * 300.00118 * 25 23 22 46 46 H 1.09006 * 109.47544 * 59.99349 * 25 23 22 47 47 H 1.09004 * 109.47710 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 5.3916 2.1843 -3.2568 9 14 3.0131 3.4362 -3.9286 10 1 3.1158 4.8563 -3.5066 11 1 3.4066 3.3140 -5.3553 12 1 1.6135 2.9697 -3.7594 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0747 1.5464 4.8802 18 1 2.3258 0.4889 4.7986 19 6 0.6018 1.6925 5.2676 20 6 0.3578 1.0057 6.6128 21 6 1.2340 1.6571 7.6845 22 6 2.7069 1.5110 7.2971 23 6 2.9510 2.1978 5.9519 24 1 4.0004 2.0941 5.6761 25 6 2.5985 3.6823 6.0658 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6878 -2.0283 32 1 2.0956 3.1411 -1.1383 33 1 5.7177 2.5748 -4.0827 34 1 2.6212 0.4185 2.5301 35 1 0.9433 1.0123 2.5299 36 1 3.2575 2.5444 3.5221 37 1 0.3507 2.7501 5.3492 38 1 -0.0225 1.2287 4.5039 39 1 0.6089 -0.0519 6.5317 40 1 -0.6915 1.1102 6.8891 41 1 1.0605 1.1675 8.6428 42 1 0.9829 2.7147 7.7657 43 1 2.9581 0.4535 7.2159 44 1 3.3312 1.9755 8.0604 45 1 1.5492 3.7864 6.3419 46 1 3.2228 4.1465 6.8294 47 1 2.7720 4.1716 5.1074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162439088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:34 Heat of formation + Delta-G solvation = -53.368978 kcal Electronic energy + Delta-G solvation = -23249.968193 eV Core-core repulsion = 20045.819825 eV Total energy + Delta-G solvation = -3204.148368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75621 -38.87362 -35.44956 -34.62051 -32.69243 -32.05092 -30.38990 -29.87935 -28.05267 -26.66689 -25.32607 -22.95374 -22.47208 -22.10766 -21.36136 -18.87372 -18.17330 -16.90782 -16.64673 -15.84613 -15.72411 -15.46358 -14.81226 -14.61996 -14.36328 -13.99625 -13.50670 -13.43838 -13.31399 -12.99239 -12.65383 -12.62007 -12.35158 -12.20383 -12.06086 -11.80407 -11.71348 -11.58161 -11.36506 -11.22823 -11.09941 -10.94011 -10.70146 -10.52000 -10.46486 -10.19505 -10.13502 -10.10219 -9.52261 -8.94940 -8.57227 -8.26117 -7.67489 -6.07353 -4.05778 3.30720 3.36677 3.38874 3.41500 3.69197 4.28471 4.41382 4.53093 4.56343 4.83487 5.03136 5.04881 5.15684 5.18529 5.25167 5.27316 5.29343 5.35822 5.43893 5.45164 5.53935 5.56776 5.60825 5.69609 5.76900 5.83051 5.88358 5.91042 5.93406 5.99531 6.00230 6.16430 6.17372 6.20054 6.30641 6.41478 6.48527 6.72118 6.96153 7.10194 7.40581 7.50031 7.63708 8.31270 8.49180 8.94906 9.05678 9.53464 11.06113 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.003730 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.700399 B = 7505.636758 C = 8030.430644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.668 5.668 17 C 0.094 3.906 18 H 0.041 0.959 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.093 4.093 24 H 0.067 0.933 25 C -0.145 4.145 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.352 0.648 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -5.318 19.342 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.404 6.404 15 C -0.090 4.090 16 N -0.301 5.301 17 C -0.016 4.016 18 H 0.059 0.941 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.112 4.112 24 H 0.086 0.914 25 C -0.202 4.202 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.172 0.828 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.802 -4.342 19.148 22.409 hybrid contribution 0.334 -0.269 -0.731 0.847 sum -10.468 -4.611 18.417 21.680 Atomic orbital electron populations 1.22236 0.96797 1.01493 1.02277 1.21425 0.93393 0.83973 1.02957 1.47929 1.64525 1.13314 1.07012 1.19618 0.97168 0.93408 0.80138 1.21339 0.95386 1.32791 1.07084 0.90884 1.24861 0.94999 0.95816 0.97377 1.69898 1.15149 1.45092 1.23592 0.86839 0.81470 0.81639 0.79682 1.19889 1.21116 1.19075 1.20243 0.78518 0.87058 0.84894 1.90669 1.44937 1.17813 1.86951 1.21921 1.02235 0.94384 0.90420 1.60170 1.32572 1.37508 0.99848 1.21521 0.95757 0.95674 0.88619 0.94141 1.21575 0.95518 1.01764 0.95901 1.21534 0.99346 0.99632 0.95150 1.21578 0.95019 1.01282 0.98001 1.21539 0.96571 1.00337 0.96534 1.21255 0.98905 0.96435 0.94586 0.91413 1.21862 1.01422 0.94697 1.02240 0.92937 0.92219 0.92056 0.89800 0.91603 0.95364 0.94616 0.92595 0.92986 0.88872 0.82768 0.90799 0.92321 0.92316 0.92071 0.92406 0.91520 0.92205 0.91928 0.92172 0.93518 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.27 2.46 -175.06 -0.43 -12.70 16 4 C 0.22 5.38 4.23 -5.19 -0.02 5.35 16 5 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.40 7.71 -10.98 -0.08 10.32 16 14 O -0.53 -13.15 15.78 5.56 0.09 -13.06 16 15 C 0.04 0.64 4.52 -4.97 -0.02 0.62 16 16 N -0.67 -9.56 5.21 -107.99 -0.56 -10.13 16 17 C 0.09 1.05 2.19 -67.72 -0.15 0.90 16 18 H 0.04 0.45 7.80 -51.93 -0.41 0.04 16 19 C -0.11 -1.12 5.15 -26.73 -0.14 -1.26 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -0.95 5.65 -26.73 -0.15 -1.10 16 22 C -0.11 -0.93 5.45 -26.73 -0.15 -1.08 16 23 C -0.09 -0.93 2.57 -90.62 -0.23 -1.17 16 24 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 25 C -0.15 -1.51 8.34 37.16 0.31 -1.20 16 26 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.05 0.72 7.31 -51.93 -0.38 0.34 16 35 H 0.09 1.23 6.48 -51.93 -0.34 0.89 16 36 H 0.35 5.46 7.89 -39.29 -0.31 5.15 16 37 H 0.07 0.82 6.43 -51.92 -0.33 0.49 16 38 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -33.10 356.35 -8.68 -41.78 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.37 Total: 2.23 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.88 Total: -3.51 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.22 Total: -49.97 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.10 -8.68 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.589 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds