Wall clock time and date at job start Tue Mar 31 2020 05:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47317 * 2 1 4 4 C 1.46504 * 119.99772 * 90.00320 * 3 2 1 5 5 C 1.50703 * 109.47029 * 270.00138 * 4 3 2 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.34783 * 120.00361 * 270.00361 * 3 2 1 14 14 O 1.21276 * 120.00050 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99744 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46946 * 179.97438 * 15 13 3 17 17 C 1.46901 * 110.99840 * 179.97438 * 16 15 13 18 18 H 1.08995 * 109.47015 * 35.00754 * 17 16 15 19 19 C 1.52996 * 109.47112 * 275.00252 * 17 16 15 20 20 C 1.53010 * 109.46621 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47329 * 60.00273 * 20 19 17 22 22 C 1.53000 * 109.46837 * 299.99742 * 21 20 19 23 23 C 1.52999 * 109.47239 * 59.99934 * 22 21 20 24 24 H 1.09001 * 109.46798 * 60.00101 * 23 22 21 25 25 C 1.53004 * 109.47216 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47152 * 299.99541 * 1 2 3 27 27 H 1.08993 * 109.47194 * 59.99673 * 1 2 3 28 28 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46990 * 240.00529 * 2 1 3 30 30 H 1.09001 * 109.47055 * 120.00664 * 2 1 3 31 31 H 1.09003 * 109.46930 * 150.00403 * 4 3 2 32 32 H 1.08996 * 109.47301 * 29.99971 * 4 3 2 33 33 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 34 34 H 1.08995 * 109.47138 * 300.00370 * 15 13 3 35 35 H 1.09007 * 109.46762 * 60.00171 * 15 13 3 36 36 H 1.00904 * 111.00164 * 303.95768 * 16 15 13 37 37 H 1.09001 * 109.47263 * 299.99865 * 19 17 16 38 38 H 1.08994 * 109.47418 * 60.00415 * 19 17 16 39 39 H 1.09007 * 109.46469 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47018 * 299.99802 * 20 19 17 41 41 H 1.08997 * 109.46823 * 59.99465 * 21 20 19 42 42 H 1.08997 * 109.46858 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.46884 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47144 * 300.00246 * 22 21 20 45 45 H 1.08996 * 109.46920 * 180.02562 * 25 23 22 46 46 H 1.08997 * 109.47193 * 300.00524 * 25 23 22 47 47 H 1.09001 * 109.46857 * 60.00502 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1159 2.7253 1.0959 7 6 0.9953 3.5055 2.8776 8 7 2.0802 3.5751 3.6177 9 14 -0.5615 4.3854 3.4173 10 1 -0.5708 5.7618 2.8598 11 1 -0.6039 4.4518 4.9002 12 1 -1.7476 3.6423 2.9210 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1601 -1.1671 15 6 1.9923 1.3061 -2.4723 16 7 2.3098 2.2064 -3.5888 17 6 2.0773 1.5458 -4.8802 18 1 1.2178 0.8805 -4.7984 19 6 3.3152 0.7347 -5.2682 20 6 3.0732 0.0472 -6.6136 21 6 2.8000 1.1047 -7.6849 22 6 1.5622 1.9159 -7.2968 23 6 1.8041 2.6033 -5.9515 24 1 2.6636 3.2687 -6.0329 25 6 0.5664 3.4151 -5.5637 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.0645 2.7984 1.1384 32 1 2.5507 1.3450 2.0284 33 1 2.8885 3.1178 3.3376 34 1 2.6227 0.4188 -2.5299 35 1 0.9443 1.0116 -2.5302 36 1 1.7841 3.0651 -3.5217 37 1 4.1747 1.4000 -5.3500 38 1 3.5101 -0.0185 -4.5048 39 1 3.9550 -0.5311 -6.8898 40 1 2.2136 -0.6181 -6.5322 41 1 3.6596 1.7700 -7.7662 42 1 2.6272 0.6149 -8.6432 43 1 1.3673 2.6690 -8.0603 44 1 0.7026 1.2506 -7.2154 45 1 0.7390 3.9051 -4.6056 46 1 0.3722 4.1685 -6.3271 47 1 -0.2934 2.7500 -5.4825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162439355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:38 Heat of formation + Delta-G solvation = -63.364791 kcal Electronic energy + Delta-G solvation = -23288.973255 eV Core-core repulsion = 20084.391437 eV Total energy + Delta-G solvation = -3204.581819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65094 -38.77003 -35.45640 -34.62464 -33.00924 -32.65779 -30.03045 -29.81263 -27.46102 -26.35812 -25.14030 -22.78948 -22.70792 -21.67571 -21.28698 -19.92937 -18.47297 -16.98844 -16.78486 -15.81248 -15.34437 -15.14279 -14.68437 -14.49801 -14.37102 -14.06003 -13.70753 -13.31193 -13.21831 -13.03708 -12.75388 -12.57151 -12.37767 -12.08903 -11.99320 -11.87145 -11.67446 -11.60183 -11.29166 -11.27041 -11.01587 -10.89763 -10.66815 -10.62529 -10.41068 -10.36551 -10.13705 -10.11508 -9.08933 -8.92232 -8.35650 -8.28586 -7.60364 -6.35459 -4.07081 3.39916 3.44855 3.47696 3.61922 3.71302 4.28172 4.49402 4.54571 4.56568 4.73665 4.92894 5.03635 5.11382 5.22119 5.28260 5.29110 5.33800 5.35789 5.39543 5.44895 5.49665 5.56582 5.61791 5.69803 5.73094 5.78040 5.82200 5.88712 5.93894 5.97825 6.06535 6.11398 6.12131 6.17111 6.25263 6.33216 6.70998 6.82293 7.05825 7.19421 7.46513 7.50504 8.07576 8.34111 8.46881 8.80948 9.08041 9.62436 11.01589 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.003741 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.029552 B = 7482.892611 C = 7863.105496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.596 5.596 4 C 0.237 3.763 5 C -0.601 4.601 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.290 1.290 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.043 3.957 16 N -0.672 5.672 17 C 0.094 3.906 18 H 0.041 0.959 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.093 4.093 24 H 0.080 0.920 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.352 0.648 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -9.327 -20.388 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.329 5.329 4 C 0.117 3.883 5 C -0.640 4.640 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.547 5.547 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.210 1.210 12 H -0.216 1.216 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.089 4.089 16 N -0.307 5.307 17 C -0.015 4.015 18 H 0.059 0.941 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.112 4.112 24 H 0.098 0.902 25 C -0.213 4.213 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.671 -7.886 -19.138 20.767 hybrid contribution -0.447 -1.120 -1.158 1.672 sum -2.118 -9.006 -20.297 22.306 Atomic orbital electron populations 1.22222 0.96301 1.00865 1.03343 1.21372 0.94605 0.83645 1.01559 1.48067 1.64304 1.13219 1.07347 1.19324 0.97869 0.92138 0.78968 1.22273 0.97755 1.34599 1.09397 0.92965 1.25785 1.03307 0.96054 0.93443 1.70764 1.02124 1.42180 1.39665 0.83489 0.74066 0.76157 0.76164 1.21411 1.20961 1.21608 1.20230 0.78804 0.86987 0.84889 1.90667 1.45355 1.17529 1.86954 1.21910 0.99846 0.96674 0.90488 1.60192 1.63383 1.07202 0.99907 1.21539 0.96552 0.94783 0.88659 0.94090 1.21547 0.98264 0.98878 0.95976 1.21543 1.01349 0.97708 0.95092 1.21544 0.98284 0.97822 0.98104 1.21563 0.98001 0.98991 0.96332 1.21278 0.98836 0.96766 0.94336 0.90185 1.21923 0.97456 1.00035 1.01888 0.90491 0.93449 0.92783 0.92040 0.90836 0.94947 0.96236 0.92190 0.89029 0.93007 0.82511 0.91137 0.92185 0.91989 0.92269 0.91857 0.92234 0.91885 0.92114 0.92045 0.92264 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.11 1.83 5.98 -4.04 -0.02 1.81 16 3 N -0.60 -12.78 2.46 -175.06 -0.43 -13.21 16 4 C 0.24 6.22 4.52 -5.19 -0.02 6.19 16 5 C -0.60 -17.17 8.92 -34.44 -0.31 -17.48 16 6 H 0.05 1.50 7.42 -52.48 -0.39 1.11 16 7 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -28.01 13.65 55.43 0.76 -27.26 16 9 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.51 10.75 7.71 -10.98 -0.08 10.66 16 14 O -0.53 -13.67 15.78 5.56 0.09 -13.58 16 15 C 0.04 0.67 4.52 -4.98 -0.02 0.65 16 16 N -0.67 -10.05 5.93 -108.00 -0.64 -10.69 16 17 C 0.09 1.08 1.97 -67.71 -0.13 0.95 16 18 H 0.04 0.47 7.80 -51.93 -0.41 0.06 16 19 C -0.11 -1.15 5.43 -26.73 -0.15 -1.29 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 23 C -0.09 -0.95 2.38 -90.62 -0.22 -1.16 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 C -0.16 -1.58 8.96 37.16 0.33 -1.25 16 26 H 0.08 1.45 7.26 -51.93 -0.38 1.07 16 27 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 30 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 31 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 32 H 0.02 0.51 7.76 -51.93 -0.40 0.11 16 33 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 34 H 0.09 1.26 6.70 -51.93 -0.35 0.92 16 35 H 0.05 0.74 7.10 -51.92 -0.37 0.37 16 36 H 0.35 5.63 5.87 -39.29 -0.23 5.40 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.72 6.21 -51.93 -0.32 0.39 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -33.02 361.37 -9.13 -42.15 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.47 Total: 2.46 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.80 Total: -6.05 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.31 Total: -51.16 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.02 -9.13 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.215 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds