Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.52997 * 109.47212 * 89.99960 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00240 * 4 3 2 6 6 C 1.52997 * 109.47242 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47380 * 59.99720 * 6 5 4 8 8 C 1.53002 * 109.46654 * 300.00174 * 7 6 5 9 9 C 1.52994 * 109.47404 * 174.99693 * 4 3 2 10 10 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 11 11 O 1.21595 * 119.99524 * 179.97438 * 10 2 1 12 12 N 1.34764 * 120.00259 * 0.02562 * 10 2 1 13 13 C 1.46497 * 120.00171 * 179.97438 * 12 10 2 14 14 C 1.53010 * 109.47226 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46857 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46838 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00209 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00211 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46811 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47133 * 119.99993 * 20 18 16 23 23 H 1.48500 * 109.47083 * 240.00234 * 20 18 16 24 24 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 25 25 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 26 26 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 27 27 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 28 28 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 29 29 H 1.09008 * 109.47017 * 54.99771 * 4 3 2 30 30 H 1.09008 * 109.46731 * 299.99706 * 5 4 3 31 31 H 1.08998 * 109.47430 * 59.99652 * 5 4 3 32 32 H 1.08998 * 109.46934 * 299.99660 * 6 5 4 33 33 H 1.09000 * 109.47325 * 179.97438 * 6 5 4 34 34 H 1.08992 * 109.47003 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46692 * 59.99766 * 7 6 5 36 36 H 1.08995 * 109.46734 * 299.99283 * 8 7 6 37 37 H 1.09002 * 109.46264 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47476 * 300.00087 * 9 4 3 39 39 H 1.09008 * 109.46970 * 60.00049 * 9 4 3 40 40 H 0.97005 * 119.99940 * 0.02562 * 12 10 2 41 41 H 1.08998 * 109.47502 * 299.99708 * 13 12 10 42 42 H 1.09000 * 109.47147 * 60.00011 * 13 12 10 43 43 H 1.08998 * 109.46769 * 300.00313 * 14 13 12 44 44 H 1.09000 * 109.46921 * 60.00029 * 14 13 12 45 45 H 1.09002 * 109.47146 * 299.99591 * 15 14 13 46 46 H 1.09000 * 109.47396 * 60.00241 * 15 14 13 47 47 H 0.97002 * 119.99593 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1178 2.0135 2.1266 6 6 1.3727 2.4546 3.5692 7 6 2.2442 3.7122 3.5717 8 6 3.5788 3.4091 2.8876 9 6 3.3236 2.9682 1.4443 10 6 2.1388 -1.1672 0.0005 11 8 3.3548 -1.1670 0.0001 12 7 1.4651 -2.3343 0.0005 13 6 2.1976 -3.6030 0.0005 14 6 1.2034 -4.7660 0.0012 15 6 1.9685 -6.0910 0.0018 16 6 0.9893 -7.2365 0.0018 17 1 -0.0726 -7.0392 0.0010 18 6 1.4489 -8.5364 0.0018 19 7 2.7420 -8.7766 0.0023 20 14 0.2351 -9.9563 0.0011 21 1 -1.1508 -9.4227 0.0000 22 1 0.4461 -10.7872 -1.2114 23 1 0.4451 -10.7875 1.2136 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.1498 1.1385 -0.5138 28 1 1.6083 2.0285 -0.5138 29 1 2.9641 0.9132 1.9815 30 1 0.6060 2.8109 1.5875 31 1 0.4971 1.1176 2.1253 32 1 1.8842 1.6571 4.1080 33 1 0.4220 2.6709 4.0564 34 1 2.4261 4.0261 4.5994 35 1 1.7326 4.5097 3.0328 36 1 4.0903 2.6116 3.4264 37 1 4.1998 4.3049 2.8898 38 1 4.2744 2.7523 0.9571 39 1 2.8118 3.7655 0.9053 40 1 0.4951 -2.3344 -0.0002 41 1 2.8243 -3.6608 -0.8894 42 1 2.8243 -3.6607 0.8905 43 1 0.5771 -4.7080 0.8914 44 1 0.5764 -4.7085 -0.8886 45 1 2.5951 -6.1491 -0.8882 46 1 2.5952 -6.1482 0.8918 47 1 3.0653 -9.6912 0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = -67.394430 kcal Electronic energy + Delta-G solvation = -22377.820480 eV Core-core repulsion = 19173.063923 eV Total energy + Delta-G solvation = -3204.756557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25910 -38.67019 -35.78578 -35.15569 -33.34475 -31.97956 -31.03037 -30.71741 -27.53151 -26.89628 -25.09966 -22.99531 -22.77179 -21.57742 -20.60189 -19.95467 -19.48133 -17.78315 -16.56091 -16.22340 -15.99385 -15.30677 -14.72079 -14.55719 -14.47227 -14.32625 -14.22542 -13.91894 -13.56852 -13.19969 -12.79068 -12.71048 -12.36414 -12.24270 -12.15971 -11.77070 -11.75836 -11.64206 -11.36169 -11.12441 -10.91346 -10.71230 -10.68722 -10.55426 -10.46277 -10.23931 -9.95512 -9.84228 -9.41885 -9.09556 -8.86751 -8.42249 -8.36273 -6.00770 -4.03690 2.76833 3.30496 3.37905 3.39297 3.41406 4.10537 4.43818 4.45571 4.50247 4.53077 4.86556 4.88436 5.02316 5.10809 5.18054 5.22416 5.28531 5.30475 5.34477 5.35049 5.42306 5.49186 5.67691 5.70127 5.76083 5.78124 5.84620 5.88714 5.92915 5.97811 6.01653 6.13394 6.21610 6.25269 6.48687 6.59196 6.65058 6.84669 7.05138 7.06481 7.65685 7.78593 7.98492 8.12376 8.39463 8.79416 9.03276 9.60382 11.10602 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.002549 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.074689 B =10983.680091 C =11023.844215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.635 5.635 3 C 0.139 3.861 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.111 4.111 10 C 0.701 3.299 11 O -0.591 6.591 12 N -0.742 5.742 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 26.687 3.574 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.373 5.373 3 C 0.016 3.984 4 C -0.124 4.124 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.149 4.149 10 C 0.402 3.598 11 O -0.469 6.469 12 N -0.398 5.398 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.881 26.508 3.560 27.026 hybrid contribution -1.168 -0.905 0.045 1.478 sum -5.049 25.604 3.606 26.345 Atomic orbital electron populations 1.21832 0.80311 1.03082 1.01653 1.46993 1.06056 1.05093 1.79193 1.21331 0.97527 0.83397 0.96165 1.21598 0.96291 0.97924 0.96619 1.21688 0.97110 1.00821 0.95593 1.21535 0.99516 0.97783 0.96953 1.21531 0.96127 0.97722 1.00223 1.21526 0.97096 1.01028 0.96028 1.21504 0.99740 0.96876 0.96782 1.15965 0.85411 0.80432 0.77973 1.90907 1.11595 1.86259 1.58123 1.45533 1.09810 1.05211 1.79201 1.21502 0.95136 0.80450 1.01827 1.21884 0.97854 0.95301 1.00739 1.19032 0.95484 0.89192 0.97694 1.21244 0.93013 0.90935 1.50731 0.92621 1.25039 0.95130 0.99040 0.95329 1.69982 1.12505 1.20098 1.50690 0.86529 0.81374 0.82439 0.77593 1.19778 1.21010 1.21004 0.92819 0.91453 0.90579 0.89816 0.90994 0.90540 0.92248 0.91662 0.92036 0.92259 0.92335 0.92183 0.91946 0.92151 0.91708 0.92050 0.77202 0.92000 0.92034 0.92850 0.92820 0.96239 0.96240 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.27 59.84 0.55 1.16 16 2 N -0.64 -7.43 2.70 -187.35 -0.51 -7.93 16 3 C 0.14 1.42 4.90 -4.04 -0.02 1.40 16 4 C -0.10 -1.00 2.39 -90.62 -0.22 -1.21 16 5 C -0.11 -0.92 4.19 -26.73 -0.11 -1.03 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 8 C -0.12 -0.92 5.92 -26.70 -0.16 -1.08 16 9 C -0.11 -0.90 5.21 -26.71 -0.14 -1.04 16 10 C 0.70 11.25 8.28 -86.93 -0.72 10.53 16 11 O -0.59 -11.90 15.92 5.28 0.08 -11.81 16 12 N -0.74 -11.37 5.42 -65.23 -0.35 -11.73 16 13 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 26 H 0.08 0.47 5.98 -51.93 -0.31 0.16 16 27 H 0.08 1.02 7.42 -51.93 -0.39 0.63 16 28 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.56 5.89 -51.93 -0.31 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.39 4.93 6.20 -40.82 -0.25 4.67 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -32.78 365.08 -10.13 -42.91 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -8.73 Total: -0.81 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.84 Total: -6.42 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.12 Total: -45.93 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.78 -10.13 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.480 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds