Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47179 * 2 1 4 4 C 1.48534 * 110.99969 * 55.50378 * 3 2 1 5 5 C 1.54934 * 103.22783 * 159.72212 * 4 3 2 6 6 C 1.54597 * 102.91882 * 322.58569 * 5 4 3 7 7 C 1.47902 * 110.99894 * 172.89706 * 3 2 1 8 8 H 1.08992 * 110.08331 * 333.60204 * 7 3 2 9 9 C 1.53006 * 109.91401 * 94.80622 * 7 3 2 10 10 N 1.46502 * 109.46652 * 296.80609 * 9 7 3 11 11 C 1.37486 * 119.99542 * 174.33171 * 10 9 7 12 12 N 1.37474 * 120.00336 * 0.02562 * 11 10 9 13 13 N 1.30344 * 119.99600 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99924 * 173.65229 * 13 11 10 15 15 C 1.53001 * 109.46839 * 114.20646 * 14 13 11 16 16 C 1.53001 * 109.46875 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47025 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00288 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99583 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00086 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47302 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47276 * 119.99738 * 21 19 17 24 24 H 1.48503 * 109.47479 * 240.00415 * 21 19 17 25 25 H 1.08999 * 109.47421 * 60.00121 * 1 2 3 26 26 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47752 * 300.00046 * 1 2 3 28 28 H 1.08999 * 109.47752 * 239.99954 * 2 1 3 29 29 H 1.09006 * 109.47071 * 119.99939 * 2 1 3 30 30 H 1.08996 * 110.66871 * 41.28499 * 4 3 2 31 31 H 1.08998 * 110.66318 * 278.15601 * 4 3 2 32 32 H 1.08992 * 110.72514 * 204.22869 * 5 4 3 33 33 H 1.09005 * 110.72320 * 80.94252 * 5 4 3 34 34 H 1.08993 * 110.30797 * 263.03677 * 6 5 4 35 35 H 1.09003 * 110.30968 * 140.87530 * 6 5 4 36 36 H 1.08992 * 109.47075 * 176.81344 * 9 7 3 37 37 H 1.09000 * 109.47277 * 56.80291 * 9 7 3 38 38 H 0.96993 * 120.00644 * 354.33540 * 10 9 7 39 39 H 0.97000 * 120.00348 * 184.92101 * 12 11 10 40 40 H 0.97002 * 120.00370 * 4.91789 * 12 11 10 41 41 H 1.08996 * 109.47675 * 234.20750 * 14 13 11 42 42 H 1.09001 * 109.46994 * 354.21282 * 14 13 11 43 43 H 1.08997 * 109.47808 * 299.99905 * 15 14 13 44 44 H 1.09001 * 109.46808 * 60.00522 * 15 14 13 45 45 H 1.09003 * 109.47275 * 300.00346 * 16 15 14 46 46 H 1.08996 * 109.47629 * 60.00391 * 16 15 14 47 47 H 0.97005 * 119.99444 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4566 2.1487 1.1429 5 6 2.4394 3.3369 1.2938 6 6 3.8109 2.6919 0.9890 7 6 3.4881 1.4280 0.1707 8 1 3.8287 0.5419 0.7062 9 6 4.1698 1.5044 -1.1970 10 7 3.8716 0.2896 -1.9596 11 6 4.2812 0.1814 -3.2676 12 7 4.9709 1.2127 -3.8596 13 7 4.0155 -0.8992 -3.9463 14 6 4.3271 -0.9611 -5.3765 15 6 5.4198 -2.0051 -5.6156 16 6 5.7458 -2.0693 -7.1091 17 6 6.8216 -3.0980 -7.3446 18 1 7.2321 -3.6504 -6.5123 19 6 7.2818 -3.3340 -8.6228 20 7 6.7816 -2.6616 -9.6363 21 14 8.6158 -4.6085 -8.9147 22 1 9.0065 -5.2217 -7.6198 23 1 8.1023 -5.6627 -9.8260 24 1 9.7987 -3.9551 -9.5304 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.4485 1.5389 2.0463 31 1 0.4537 2.5062 0.9098 32 1 2.4156 3.7304 2.3099 33 1 2.2120 4.1198 0.5703 34 1 4.3170 2.4232 1.9162 35 1 4.4282 3.3739 0.4042 36 1 5.2476 1.5927 -1.0612 37 1 3.7993 2.3741 -1.7395 38 1 3.3853 -0.4382 -1.5419 39 1 5.1975 1.1670 -4.8017 40 1 5.2310 1.9863 -3.3353 41 1 3.4314 -1.2390 -5.9320 42 1 4.6765 0.0144 -5.7148 43 1 6.3156 -1.7273 -5.0602 44 1 5.0705 -2.9806 -5.2773 45 1 4.8501 -2.3469 -7.6649 46 1 6.0953 -1.0938 -7.4470 47 1 7.1056 -2.8274 -10.5355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170915076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = 25.845781 kcal Electronic energy + Delta-G solvation = -22119.671799 eV Core-core repulsion = 18951.251193 eV Total energy + Delta-G solvation = -3168.420607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.212 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96750 -38.10557 -34.91798 -33.91202 -33.37580 -31.94602 -30.60747 -29.69214 -28.98600 -26.55175 -25.06227 -23.31048 -22.40940 -21.06863 -20.94057 -20.14356 -19.36674 -17.46832 -16.91298 -16.40817 -16.07713 -15.86443 -15.33532 -14.70935 -14.49990 -14.39074 -13.95452 -13.67564 -13.57101 -13.24752 -13.03023 -12.78161 -12.40191 -12.13984 -11.84743 -11.77668 -11.63102 -11.44507 -11.39903 -11.34194 -11.09225 -10.98565 -10.79517 -10.51600 -10.45204 -9.58187 -9.29785 -8.98414 -8.93099 -8.79664 -8.53590 -8.25304 -7.29278 -5.90550 -3.91758 3.16126 3.36831 3.39819 3.43806 3.49337 3.51750 4.12181 4.19798 4.35889 4.48701 4.54411 4.71295 4.79560 4.89529 4.93396 5.08306 5.17865 5.24278 5.28245 5.37682 5.41651 5.44822 5.50785 5.56642 5.62588 5.69358 5.76105 5.83571 5.92041 6.11871 6.39561 6.48608 6.58160 6.67781 6.72228 6.95023 7.14831 7.26964 7.34299 7.63871 7.81089 7.98147 8.11688 8.26362 8.56136 9.06583 9.16214 9.71460 11.20854 Molecular weight = 282.21amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.002471 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.154629 B =11330.761975 C =11644.114948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.038 3.962 3 N -0.507 5.507 4 C 0.034 3.966 5 C -0.124 4.124 6 C -0.124 4.124 7 C 0.055 3.945 8 H 0.060 0.940 9 C 0.142 3.858 10 N -0.727 5.727 11 C 0.613 3.387 12 N -0.897 5.897 13 N -0.664 5.664 14 C 0.082 3.918 15 C -0.102 4.102 16 C 0.021 3.979 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.411 0.589 40 H 0.384 0.616 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 14.615 25.414 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 N -0.232 5.232 4 C -0.094 4.094 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.054 4.054 8 H 0.078 0.922 9 C 0.016 3.984 10 N -0.374 5.374 11 C 0.246 3.754 12 N -0.457 5.457 13 N -0.406 5.406 14 C -0.048 4.048 15 C -0.141 4.141 16 C -0.017 4.017 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.245 0.755 40 H 0.212 0.788 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.694 14.087 24.818 30.475 hybrid contribution 1.450 -0.401 0.073 1.506 sum -9.244 13.687 24.891 29.872 Atomic orbital electron populations 1.21804 0.94524 1.02075 1.02353 1.22414 0.96524 0.89052 1.01037 1.64770 1.04222 1.12903 1.41335 1.23238 0.99254 0.94678 0.92205 1.22489 0.94125 0.97806 1.01777 1.22370 0.98048 0.96057 0.99739 1.22588 0.89038 0.98561 0.95220 0.92168 1.21323 0.97902 0.88230 0.90967 1.43880 1.64379 1.20069 1.09108 1.18873 0.87161 0.84215 0.85106 1.43164 1.65223 1.22601 1.14718 1.72440 1.39242 1.19750 1.09135 1.21695 0.98754 0.97398 0.86964 1.21644 0.95454 0.97438 0.99518 1.19104 0.96393 0.96688 0.89518 1.21333 1.20288 1.20922 0.92706 0.92754 1.25038 0.96925 0.96383 0.96307 1.69986 1.43052 1.41603 0.99108 0.86555 0.81832 0.81579 0.78153 1.19782 1.21044 1.21110 0.91624 0.91999 0.92843 0.89843 0.94728 0.93785 0.89869 0.91008 0.90548 0.91047 0.90394 0.92449 0.91426 0.75086 0.75475 0.78842 0.91879 0.96178 0.94266 0.93018 0.96613 0.96987 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.65 37.15 0.36 -0.75 16 2 C 0.04 0.31 5.29 -3.82 -0.02 0.29 16 3 N -0.51 -4.01 4.96 -222.58 -1.10 -5.12 16 4 C 0.03 0.21 5.22 -1.90 -0.01 0.20 16 5 C -0.12 -0.65 7.06 -24.87 -0.18 -0.82 16 6 C -0.12 -0.66 6.57 -25.38 -0.17 -0.83 16 7 C 0.05 0.40 2.70 -66.64 -0.18 0.22 16 8 H 0.06 0.45 7.63 -51.93 -0.40 0.06 16 9 C 0.14 1.20 4.51 -4.04 -0.02 1.18 16 10 N -0.73 -8.59 5.44 -61.79 -0.34 -8.92 16 11 C 0.61 9.34 8.63 -320.09 -2.76 6.58 16 12 N -0.90 -11.50 8.77 30.14 0.26 -11.24 16 13 N -0.66 -12.57 10.62 -61.77 -0.66 -13.23 16 14 C 0.08 1.69 6.27 -4.04 -0.03 1.66 16 15 C -0.10 -2.42 5.48 -26.73 -0.15 -2.56 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.51 -15.47 9.11 -34.44 -0.31 -15.78 16 18 H 0.05 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.99 13.29 55.43 0.74 -27.26 16 21 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 6.85 -51.93 -0.36 -0.01 16 28 H 0.08 0.80 5.55 -51.93 -0.29 0.51 16 29 H 0.03 0.26 7.90 -51.93 -0.41 -0.15 16 30 H 0.04 0.27 8.02 -51.93 -0.42 -0.15 16 31 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.37 7.69 -51.93 -0.40 -0.03 16 36 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 38 H 0.41 4.88 5.72 -40.82 -0.23 4.64 16 39 H 0.41 5.69 6.21 -40.82 -0.25 5.43 16 40 H 0.38 3.74 7.36 -40.82 -0.30 3.44 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.38 5.46 -51.93 -0.28 0.10 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -33.82 364.31 -12.65 -46.47 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.33 Total: 4.93 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.69 Total: -8.66 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.09 Total: -65.77 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.82 -12.65 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170915076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.315 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds