Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47287 * 2 1 4 4 C 1.48563 * 111.00184 * 279.60638 * 3 2 1 5 5 C 1.54376 * 104.59362 * 200.95888 * 4 3 2 6 6 C 1.54266 * 105.06332 * 23.85066 * 5 4 3 7 7 C 1.48563 * 111.00018 * 164.18561 * 3 2 1 8 8 H 1.08999 * 110.41186 * 40.26157 * 7 3 2 9 9 C 1.53004 * 110.40814 * 277.94109 * 7 3 2 10 10 N 1.46504 * 109.46656 * 173.28994 * 9 7 3 11 11 C 1.37481 * 119.99563 * 184.60778 * 10 9 7 12 12 N 1.37484 * 120.00324 * 359.97438 * 11 10 9 13 13 N 1.30349 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00019 * 181.36568 * 13 11 10 15 15 C 1.53000 * 109.47245 * 114.18905 * 14 13 11 16 16 C 1.53000 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47026 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46804 * 90.00117 * 21 19 17 23 23 H 1.48497 * 109.47430 * 209.99759 * 21 19 17 24 24 H 1.48494 * 109.47204 * 330.00509 * 21 19 17 25 25 H 1.08993 * 109.47389 * 300.00115 * 1 2 3 26 26 H 1.09009 * 109.47087 * 59.99748 * 1 2 3 27 27 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47019 * 120.00526 * 2 1 3 29 29 H 1.09001 * 109.46931 * 240.00328 * 2 1 3 30 30 H 1.08999 * 110.40701 * 319.73400 * 4 3 2 31 31 H 1.08995 * 110.41185 * 82.17929 * 4 3 2 32 32 H 1.08997 * 110.32550 * 264.95773 * 5 4 3 33 33 H 1.08999 * 110.41119 * 142.78993 * 5 4 3 34 34 H 1.08996 * 110.32506 * 241.10401 * 6 5 4 35 35 H 1.08999 * 110.40900 * 118.93556 * 6 5 4 36 36 H 1.09003 * 109.47023 * 293.28031 * 9 7 3 37 37 H 1.08993 * 109.47201 * 53.28657 * 9 7 3 38 38 H 0.96998 * 120.00400 * 4.60048 * 10 9 7 39 39 H 0.96993 * 119.99908 * 354.10236 * 12 11 10 40 40 H 0.97006 * 119.99922 * 174.09549 * 12 11 10 41 41 H 1.09001 * 109.46529 * 234.18001 * 14 13 11 42 42 H 1.08997 * 109.47588 * 354.18246 * 14 13 11 43 43 H 1.09005 * 109.46946 * 299.99716 * 15 14 13 44 44 H 1.08997 * 109.47366 * 59.99204 * 15 14 13 45 45 H 1.08999 * 109.47132 * 299.99298 * 16 15 14 46 46 H 1.09002 * 109.47147 * 59.99575 * 16 15 14 47 47 H 0.96997 * 120.00370 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9790 1.9641 -1.3675 5 6 2.9779 3.1402 -1.3217 6 6 3.9491 2.7969 -0.1734 7 6 3.4553 1.4421 0.3780 8 1 4.0031 0.6210 -0.0844 9 6 3.6087 1.3945 1.8996 10 7 5.0289 1.2903 2.2441 11 6 5.4082 1.1367 3.5565 12 7 4.4550 1.0813 4.5457 13 7 6.6717 1.0435 3.8631 14 6 7.0746 0.8498 5.2582 15 6 7.7264 -0.5256 5.4146 16 6 8.1477 -0.7276 6.8715 17 6 8.7892 -2.0826 7.0256 18 1 8.8862 -2.7345 6.1701 19 6 9.2522 -2.4898 8.2588 20 7 9.1336 -1.6961 9.3007 21 14 10.0466 -4.1696 8.4500 22 1 11.5085 -4.0553 8.2156 23 1 9.8039 -4.6785 9.8238 24 1 9.4591 -5.1103 7.4626 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.2958 1.2247 -2.1030 31 1 0.9767 2.3254 -1.5976 32 1 2.4553 4.0728 -1.1093 33 1 3.5188 3.2165 -2.2649 34 1 3.9031 3.5609 0.6026 35 1 4.9671 2.7031 -0.5517 36 1 3.1950 2.3041 2.3351 37 1 3.0752 0.5286 2.2916 38 1 5.7014 1.3296 1.5462 39 1 3.5222 1.2360 4.3295 40 1 4.7154 0.8875 5.4599 41 1 7.7878 1.6240 5.5412 42 1 6.1971 0.9113 5.9018 43 1 7.0133 -1.2999 5.1315 44 1 8.6039 -0.5871 4.7710 45 1 8.8610 0.0467 7.1541 46 1 7.2704 -0.6659 7.5153 47 1 9.4596 -1.9824 10.1682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170915077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = 21.278315 kcal Electronic energy + Delta-G solvation = -21848.363556 eV Core-core repulsion = 18679.744889 eV Total energy + Delta-G solvation = -3168.618667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.212 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87530 -38.21889 -35.06565 -33.87916 -33.34115 -31.97440 -30.66121 -29.73844 -29.10236 -26.53708 -24.92454 -23.18842 -22.74956 -21.15604 -20.70770 -20.27608 -19.46709 -17.56509 -16.85808 -16.35932 -16.03219 -15.91233 -15.06285 -14.92050 -14.56853 -14.43061 -14.19070 -13.85967 -13.56908 -13.28426 -13.03760 -12.76793 -12.52525 -12.15958 -11.91411 -11.75563 -11.69811 -11.62460 -11.36218 -11.19582 -11.16426 -10.88583 -10.79164 -10.53823 -10.47952 -9.60528 -9.32414 -9.02089 -8.98737 -8.97815 -8.60504 -8.26119 -7.36903 -5.91555 -3.92987 2.95285 3.33841 3.37346 3.42834 3.47192 3.63225 4.11978 4.21701 4.26342 4.51920 4.53361 4.68116 4.73824 4.85066 4.93421 5.00094 5.13812 5.18014 5.28579 5.43750 5.45903 5.48023 5.49806 5.53594 5.57814 5.69136 5.73389 5.77635 5.87509 6.06601 6.35173 6.39976 6.53339 6.54601 6.67336 6.92230 7.11865 7.21436 7.31907 7.58021 7.79222 7.96182 8.10279 8.20094 8.54500 9.00422 9.14558 9.70288 11.19819 Molecular weight = 282.21amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002398 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.537101 B =11674.999519 C =12101.867844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 N -0.504 5.504 4 C 0.034 3.966 5 C -0.125 4.125 6 C -0.121 4.121 7 C 0.053 3.947 8 H 0.061 0.939 9 C 0.142 3.858 10 N -0.730 5.730 11 C 0.612 3.388 12 N -0.898 5.898 13 N -0.660 5.660 14 C 0.081 3.919 15 C -0.101 4.101 16 C 0.021 3.979 17 C -0.515 4.515 18 H 0.054 0.946 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.385 0.615 40 H 0.412 0.588 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.016 0.984 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.247 9.339 -22.261 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 N -0.229 5.229 4 C -0.094 4.094 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.056 4.056 8 H 0.079 0.921 9 C 0.016 3.984 10 N -0.376 5.376 11 C 0.246 3.754 12 N -0.458 5.458 13 N -0.401 5.401 14 C -0.050 4.050 15 C -0.140 4.140 16 C -0.017 4.017 17 C -0.554 4.554 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.213 0.787 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.829 9.639 -22.041 30.549 hybrid contribution 0.239 -1.531 0.288 1.576 sum -18.590 8.108 -21.754 29.741 Atomic orbital electron populations 1.21702 0.94442 1.01512 1.02467 1.22323 0.96721 0.88951 1.01303 1.65217 1.16169 1.18532 1.22950 1.23139 1.00335 0.96419 0.89476 1.22301 0.96793 0.98575 0.98649 1.22379 0.98936 0.96268 0.98280 1.22750 0.89523 0.98203 0.95082 0.92086 1.21067 0.82025 1.01377 0.93901 1.43607 1.06563 1.83377 1.04045 1.18799 0.85754 0.89286 0.81597 1.43178 1.09003 1.82762 1.10885 1.72462 1.09764 1.36973 1.20921 1.21714 0.97641 0.99011 0.86597 1.21642 0.99060 0.93274 1.00002 1.19100 0.96180 0.96622 0.89758 1.21287 1.38139 1.01610 0.94331 0.92792 1.25032 0.96246 0.97260 0.96068 1.69970 1.47364 1.36440 0.99973 0.86605 0.79754 0.84530 0.77181 1.20673 1.21293 1.19955 0.91780 0.92883 0.92318 0.90601 0.94314 0.93709 0.89947 0.90889 0.91269 0.90439 0.90932 0.91721 0.92226 0.75075 0.78724 0.75387 0.91850 0.96091 0.94253 0.92952 0.96600 0.96980 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 10.09 37.16 0.37 -0.47 16 2 C 0.04 0.24 5.54 -3.82 -0.02 0.21 16 3 N -0.50 -3.56 4.98 -222.14 -1.11 -4.67 16 4 C 0.03 0.21 6.13 -2.18 -0.01 0.19 16 5 C -0.13 -0.71 7.00 -25.35 -0.18 -0.89 16 6 C -0.12 -0.80 6.41 -25.35 -0.16 -0.96 16 7 C 0.05 0.39 2.27 -66.07 -0.15 0.24 16 8 H 0.06 0.48 8.00 -51.93 -0.42 0.06 16 9 C 0.14 1.20 4.66 -4.04 -0.02 1.18 16 10 N -0.73 -8.11 5.58 -61.79 -0.34 -8.45 16 11 C 0.61 9.01 8.63 -320.08 -2.76 6.25 16 12 N -0.90 -11.18 8.76 30.14 0.26 -10.92 16 13 N -0.66 -12.19 10.62 -61.78 -0.66 -12.85 16 14 C 0.08 1.63 6.30 -4.04 -0.03 1.60 16 15 C -0.10 -2.37 5.48 -26.73 -0.15 -2.52 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 18 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 21 Si 0.89 22.47 29.54 -169.99 -5.02 17.44 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.30 7.80 -51.92 -0.40 -0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.54 7.01 -51.93 -0.36 0.18 16 29 H 0.04 0.26 7.64 -51.93 -0.40 -0.14 16 30 H 0.04 0.26 7.67 -51.93 -0.40 -0.13 16 31 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.56 7.72 -51.93 -0.40 0.16 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 37 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 38 H 0.41 4.46 8.54 -40.82 -0.35 4.12 16 39 H 0.39 3.70 7.38 -40.82 -0.30 3.40 16 40 H 0.41 5.54 6.19 -40.82 -0.25 5.28 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.39 5.39 -51.93 -0.28 0.11 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.21 369.76 -12.73 -45.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.52 Total: 3.99 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.65 Total: -8.92 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -1.11 Total: -64.03 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.21 -12.73 -45.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170915077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.218 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds