Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99952 * 2 1 4 4 O 1.21593 * 119.99598 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00351 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00331 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47385 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47209 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46856 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00225 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99626 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47253 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47227 * 119.99516 * 13 11 9 16 16 H 1.48496 * 109.47313 * 239.99629 * 13 11 9 17 17 C 1.46503 * 120.00148 * 179.97438 * 2 1 3 18 18 C 1.54065 * 108.87405 * 62.97576 * 17 2 1 19 19 C 1.54066 * 112.81762 * 197.50625 * 18 17 2 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87630 * 300.00259 * 17 2 1 24 24 H 1.09000 * 109.47590 * 270.00596 * 1 2 3 25 25 H 1.08998 * 109.47131 * 30.00177 * 1 2 3 26 26 H 1.09000 * 109.47649 * 150.00386 * 1 2 3 27 27 H 0.96999 * 119.99441 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.46724 * 300.00201 * 6 5 3 29 29 H 1.08999 * 109.46999 * 59.99566 * 6 5 3 30 30 H 1.09002 * 109.46690 * 299.99952 * 7 6 5 31 31 H 1.08998 * 109.47257 * 59.99290 * 7 6 5 32 32 H 1.08995 * 109.47073 * 299.99160 * 8 7 6 33 33 H 1.08994 * 109.47527 * 59.99920 * 8 7 6 34 34 H 0.97000 * 119.99699 * 180.02562 * 12 11 9 35 35 H 1.09002 * 108.85422 * 181.44123 * 17 2 1 36 36 H 1.09005 * 108.81720 * 318.37164 * 18 17 2 37 37 H 1.09004 * 108.81387 * 76.75411 * 18 17 2 38 38 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 39 39 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 40 40 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 41 41 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 42 42 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 43 43 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 44 44 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 45 45 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 46 46 H 1.09006 * 109.62936 * 95.21532 * 23 17 2 47 47 H 1.08998 * 109.78811 * 334.73047 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1671 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7661 -0.0010 8 6 1.9683 6.0911 -0.0022 9 6 0.9890 7.2365 -0.0027 10 1 -0.0728 7.0392 -0.0026 11 6 1.4487 8.5365 -0.0044 12 7 2.7416 8.7767 -0.0050 13 14 0.2348 9.9563 -0.0057 14 1 -1.1511 9.4227 -0.0054 15 1 0.4454 10.7888 1.2058 16 1 0.4449 10.7861 -1.2192 17 6 2.1975 -1.2687 0.0006 18 6 1.8731 -2.0321 -1.2977 19 6 2.2309 -3.5284 -1.2163 20 6 3.5507 -3.7686 -0.5348 21 6 3.2874 -4.0440 0.9599 22 6 3.0661 -2.8218 1.7185 23 6 1.8243 -2.0458 1.2339 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6612 0.8889 29 1 2.8242 3.6604 -0.8911 30 1 0.5763 4.7081 -0.8907 31 1 0.5769 4.7085 0.8892 32 1 2.5955 6.1493 0.8873 33 1 2.5943 6.1484 -0.8926 34 1 3.0649 9.6912 -0.0058 35 1 3.2667 -1.0581 0.0264 36 1 0.8072 -1.9363 -1.5050 37 1 2.4319 -1.5828 -2.1187 38 1 2.2763 -3.9357 -2.2263 39 1 1.4486 -4.0485 -0.6633 40 1 4.1825 -2.8864 -0.6389 41 1 4.0436 -4.6305 -0.9846 42 1 2.4075 -4.6807 1.0518 43 1 4.1468 -4.5673 1.3791 44 1 2.9342 -3.0780 2.7698 45 1 3.9421 -2.1810 1.6189 46 1 1.0239 -2.7468 0.9969 47 1 1.4924 -1.3615 2.0148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -56.615501 kcal Electronic energy + Delta-G solvation = -22563.212006 eV Core-core repulsion = 19358.922859 eV Total energy + Delta-G solvation = -3204.289147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47500 -38.71064 -35.66869 -35.16799 -33.31944 -32.59873 -31.61710 -30.42608 -27.14326 -26.59397 -25.17255 -24.34712 -22.82112 -20.81728 -20.61050 -20.15805 -18.91218 -17.90721 -16.72366 -16.28014 -15.99475 -15.37202 -14.98225 -14.74181 -14.44955 -14.14961 -14.12495 -13.80143 -13.59728 -13.36772 -13.02279 -12.63435 -12.47717 -12.28767 -12.16376 -11.78112 -11.67656 -11.51866 -11.08063 -10.92834 -10.90411 -10.68983 -10.63212 -10.60871 -10.56041 -10.46419 -9.95254 -9.84197 -9.41576 -9.09437 -8.87621 -8.43991 -8.36291 -6.00701 -4.03609 2.73703 3.30551 3.37977 3.38949 3.41470 4.09024 4.32613 4.44338 4.45590 4.67560 4.82415 4.87484 4.90482 4.98106 5.08291 5.16937 5.24359 5.28287 5.35141 5.46947 5.49558 5.57139 5.69930 5.72535 5.78830 5.84596 5.87176 5.91073 5.92580 5.98147 6.07943 6.16021 6.20659 6.21972 6.50402 6.59932 6.65186 6.86165 7.05248 7.08656 7.65843 7.78736 7.98591 8.12638 8.39571 8.79239 9.03385 9.60455 11.10689 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043821 B = 0.002541 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.807754 B =11018.274199 C =11186.439420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.635 5.635 3 C 0.702 3.298 4 O -0.593 6.593 5 N -0.742 5.742 6 C 0.134 3.866 7 C -0.120 4.120 8 C 0.024 3.976 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.158 3.842 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.125 4.125 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.393 0.607 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -27.291 0.215 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.373 5.373 3 C 0.403 3.597 4 O -0.471 6.471 5 N -0.397 5.397 6 C 0.011 3.989 7 C -0.158 4.158 8 C -0.014 4.014 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.054 3.946 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.331 -27.100 0.213 27.305 hybrid contribution -1.219 0.926 -0.035 1.531 sum -4.550 -26.174 0.178 26.567 Atomic orbital electron populations 1.21662 0.80518 1.02824 1.01618 1.47231 1.06036 1.04953 1.79080 1.15973 0.85415 0.80465 0.77859 1.90892 1.11647 1.86186 1.58374 1.45535 1.09817 1.05181 1.79165 1.21506 0.95146 0.80446 1.01840 1.21882 0.97854 0.95297 1.00744 1.19031 0.95485 0.89188 0.97697 1.21244 0.93015 0.90934 1.50743 0.92618 1.25036 0.95126 0.99038 0.95328 1.69976 1.12512 1.20100 1.50681 0.86529 0.81378 0.82440 0.77592 1.19780 1.21004 1.21012 1.20807 0.98384 0.81633 0.93779 1.22291 1.01682 0.95000 0.97661 1.21278 0.97642 0.95455 1.00685 1.21403 0.97566 1.01922 0.95183 1.20501 1.01519 0.97916 0.95480 1.20443 0.98321 0.97259 0.99593 1.21737 0.98216 0.98984 0.97362 0.92786 0.91464 0.90927 0.77175 0.91996 0.92014 0.92847 0.92817 0.96233 0.96241 0.92987 0.88073 0.91834 0.91841 0.92159 0.92037 0.91250 0.91922 0.92264 0.92331 0.92100 0.91645 0.91526 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 9.47 59.84 0.57 1.22 16 2 N -0.64 -7.64 2.58 -180.49 -0.47 -8.11 16 3 C 0.70 11.43 8.28 -86.92 -0.72 10.71 16 4 O -0.59 -12.06 15.65 5.28 0.08 -11.97 16 5 N -0.74 -11.46 5.42 -65.23 -0.35 -11.81 16 6 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 7 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 8 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 9 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 13 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.16 1.69 2.01 -68.64 -0.14 1.55 16 18 C -0.13 -1.13 5.39 -25.62 -0.14 -1.27 16 19 C -0.11 -0.80 5.31 -27.44 -0.15 -0.94 16 20 C -0.12 -0.90 5.61 -27.34 -0.15 -1.06 16 21 C -0.12 -0.81 5.26 -29.60 -0.16 -0.97 16 22 C -0.12 -0.97 5.26 -29.60 -0.16 -1.13 16 23 C -0.12 -1.09 4.73 -27.34 -0.13 -1.22 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 26 H 0.07 0.48 6.37 -51.93 -0.33 0.15 16 27 H 0.39 4.97 6.20 -40.82 -0.25 4.72 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.10 1.37 5.33 -51.93 -0.28 1.09 16 36 H 0.06 0.51 6.23 -51.93 -0.32 0.18 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 40 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.37 7.47 -51.93 -0.39 -0.01 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 46 H 0.07 0.49 6.98 -51.93 -0.36 0.13 16 47 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -32.73 357.31 -9.90 -42.63 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.39 Total: -0.23 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.88 Total: -6.18 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.08 Total: -46.20 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.73 -9.90 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.984 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds