Wall clock time and date at job start Tue Mar 31 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99952 * 2 1 4 4 O 1.21593 * 119.99598 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00351 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00331 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47385 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47209 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46856 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00225 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99626 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47253 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47227 * 119.99516 * 13 11 9 16 16 H 1.48496 * 109.47313 * 239.99629 * 13 11 9 17 17 C 1.46503 * 120.00148 * 179.97438 * 2 1 3 18 18 C 1.54065 * 108.87405 * 62.97576 * 17 2 1 19 19 C 1.54066 * 112.81762 * 197.50625 * 18 17 2 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87630 * 300.00259 * 17 2 1 24 24 H 1.09000 * 109.47590 * 270.00596 * 1 2 3 25 25 H 1.08998 * 109.47131 * 30.00177 * 1 2 3 26 26 H 1.09000 * 109.47649 * 150.00386 * 1 2 3 27 27 H 0.96999 * 119.99441 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.46724 * 300.00201 * 6 5 3 29 29 H 1.08999 * 109.46999 * 59.99566 * 6 5 3 30 30 H 1.09002 * 109.46690 * 299.99952 * 7 6 5 31 31 H 1.08998 * 109.47257 * 59.99290 * 7 6 5 32 32 H 1.08995 * 109.47073 * 299.99160 * 8 7 6 33 33 H 1.08994 * 109.47527 * 59.99920 * 8 7 6 34 34 H 0.97000 * 119.99699 * 180.02562 * 12 11 9 35 35 H 1.09002 * 108.85422 * 181.44123 * 17 2 1 36 36 H 1.09005 * 108.81720 * 318.37164 * 18 17 2 37 37 H 1.09004 * 108.81387 * 76.75411 * 18 17 2 38 38 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 39 39 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 40 40 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 41 41 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 42 42 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 43 43 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 44 44 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 45 45 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 46 46 H 1.09006 * 109.62936 * 95.21532 * 23 17 2 47 47 H 1.08998 * 109.78811 * 334.73047 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1671 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7661 -0.0010 8 6 1.9683 6.0911 -0.0022 9 6 0.9890 7.2365 -0.0027 10 1 -0.0728 7.0392 -0.0026 11 6 1.4487 8.5365 -0.0044 12 7 2.7416 8.7767 -0.0050 13 14 0.2348 9.9563 -0.0057 14 1 -1.1511 9.4227 -0.0054 15 1 0.4454 10.7888 1.2058 16 1 0.4449 10.7861 -1.2192 17 6 2.1975 -1.2687 0.0006 18 6 1.8731 -2.0321 -1.2977 19 6 2.2309 -3.5284 -1.2163 20 6 3.5507 -3.7686 -0.5348 21 6 3.2874 -4.0440 0.9599 22 6 3.0661 -2.8218 1.7185 23 6 1.8243 -2.0458 1.2339 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6612 0.8889 29 1 2.8242 3.6604 -0.8911 30 1 0.5763 4.7081 -0.8907 31 1 0.5769 4.7085 0.8892 32 1 2.5955 6.1493 0.8873 33 1 2.5943 6.1484 -0.8926 34 1 3.0649 9.6912 -0.0058 35 1 3.2667 -1.0581 0.0264 36 1 0.8072 -1.9363 -1.5050 37 1 2.4319 -1.5828 -2.1187 38 1 2.2763 -3.9357 -2.2263 39 1 1.4486 -4.0485 -0.6633 40 1 4.1825 -2.8864 -0.6389 41 1 4.0436 -4.6305 -0.9846 42 1 2.4075 -4.6807 1.0518 43 1 4.1468 -4.5673 1.3791 44 1 2.9342 -3.0780 2.7698 45 1 3.9421 -2.1810 1.6189 46 1 1.0239 -2.7468 0.9969 47 1 1.4924 -1.3615 2.0148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:08 Heat of formation + Delta-G solvation = -75.931205 kcal Electronic energy + Delta-G solvation = -22564.049598 eV Core-core repulsion = 19358.922859 eV Total energy + Delta-G solvation = -3205.126739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55145 -39.62560 -37.04285 -36.39032 -35.20400 -33.29320 -33.12242 -31.57409 -28.54820 -27.82516 -25.84203 -25.53260 -24.35767 -22.32105 -21.43030 -21.36782 -19.77888 -19.09783 -18.46064 -17.65186 -17.07102 -16.57558 -16.33506 -16.05490 -15.64529 -15.41724 -15.03302 -14.66841 -14.58733 -14.26810 -14.18396 -13.84766 -13.73998 -13.47398 -13.27140 -13.13748 -12.94140 -12.77583 -12.52181 -12.34038 -12.25246 -11.80455 -11.68536 -11.61279 -11.55661 -11.29316 -11.27548 -11.21912 -11.14565 -11.02793 -10.56414 -10.22943 -9.48537 -8.19570 -6.31156 1.41791 1.42157 1.55305 1.63082 2.10688 2.41896 3.00120 3.14266 3.60660 3.80268 4.03163 4.12541 4.15651 4.20225 4.21360 4.22146 4.33001 4.42241 4.50605 4.54409 4.56176 4.63900 4.83918 4.85450 4.93201 4.94280 4.94796 5.06509 5.10568 5.15657 5.19573 5.30333 5.32665 5.34477 5.41136 5.46341 5.49907 5.53188 5.57807 5.64179 5.70233 5.83933 5.96597 6.22231 6.86095 6.97128 7.38437 7.54187 8.92972 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043821 B = 0.002541 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.807754 B =11018.274199 C =11186.439420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.627 5.627 3 C 0.694 3.306 4 O -0.642 6.642 5 N -0.730 5.730 6 C 0.149 3.851 7 C -0.099 4.099 8 C 0.024 3.976 9 C -0.539 4.539 10 H 0.067 0.933 11 C -0.005 4.005 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.257 1.257 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.156 3.844 18 C -0.122 4.122 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.410 0.590 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.068 0.932 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.092 0.908 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -28.971 0.242 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.364 5.364 3 C 0.395 3.605 4 O -0.525 6.525 5 N -0.387 5.387 6 C 0.024 3.976 7 C -0.137 4.137 8 C -0.014 4.014 9 C -0.577 4.577 10 H 0.086 0.914 11 C -0.203 4.203 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.181 1.181 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.053 3.947 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.155 4.155 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.248 0.752 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.653 -28.831 0.240 29.590 hybrid contribution -0.158 1.400 -0.040 1.409 sum -6.812 -27.431 0.200 28.265 Atomic orbital electron populations 1.21977 0.77709 1.04504 1.03146 1.47328 1.07753 1.03832 1.77450 1.16203 0.84956 0.81564 0.77763 1.90861 1.14061 1.87022 1.60528 1.45186 1.10448 1.03966 1.79148 1.21073 0.94638 0.81600 1.00268 1.21577 0.97417 0.92573 1.02099 1.18943 0.95194 0.92224 0.95055 1.21702 0.93870 0.91803 1.50319 0.91436 1.26051 0.97055 1.02354 0.94797 1.70123 1.14824 1.20926 1.51772 0.85341 0.79293 0.78430 0.77612 1.18100 1.20574 1.20588 1.20916 0.96382 0.81472 0.95974 1.22244 1.02317 0.95896 0.95553 1.21268 0.97774 0.94022 1.01525 1.21414 0.97653 1.01327 0.95867 1.20483 1.02511 0.97355 0.94818 1.20437 0.97111 0.97387 1.00501 1.21677 0.99030 0.98953 0.95838 0.91280 0.90797 0.88315 0.75180 0.93726 0.93736 0.91344 0.91330 0.98994 0.99000 0.92811 0.91805 0.90101 0.93989 0.91250 0.90189 0.93700 0.90775 0.90445 0.91939 0.91147 0.94282 0.88965 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 9.47 127.77 1.21 2.16 16 2 N -0.63 -14.56 2.58 -843.21 -2.18 -16.74 16 3 C 0.69 22.93 8.28 179.06 1.48 24.42 16 4 O -0.64 -27.60 15.65 -4.01 -0.06 -27.66 16 5 N -0.73 -22.29 5.42 -478.54 -2.59 -24.89 16 6 C 0.15 5.64 5.67 86.38 0.49 6.13 16 7 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 8 C 0.02 1.25 4.97 29.85 0.15 1.40 16 9 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 10 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 11 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 12 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 13 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 14 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.16 3.28 2.01 44.53 0.09 3.37 16 18 C -0.12 -1.98 5.39 31.31 0.17 -1.81 16 19 C -0.11 -1.28 5.31 30.14 0.16 -1.12 16 20 C -0.13 -1.71 5.61 30.20 0.17 -1.54 16 21 C -0.11 -1.40 5.26 28.74 0.15 -1.25 16 22 C -0.12 -1.84 5.26 28.74 0.15 -1.69 16 23 C -0.12 -1.86 4.73 30.20 0.14 -1.72 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.95 6.36 -2.39 -0.02 0.93 16 26 H 0.10 0.89 6.37 -2.39 -0.02 0.87 16 27 H 0.41 9.59 6.20 -92.71 -0.58 9.02 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.06 1.85 5.33 -2.39 -0.01 1.84 16 36 H 0.08 1.03 6.23 -2.38 -0.01 1.02 16 37 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.69 6.63 -2.39 -0.02 0.68 16 40 H 0.04 0.83 6.97 -2.39 -0.02 0.82 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.71 7.47 -2.39 -0.02 0.69 16 43 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.04 0.81 7.46 -2.39 -0.02 0.80 16 46 H 0.09 1.02 6.98 -2.38 -0.02 1.00 16 47 H 0.06 1.09 7.93 -2.39 -0.02 1.07 16 Total: -1.00 -73.73 357.31 3.05 -70.68 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.36 Total: 15.40 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.22 Total: -5.34 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.49 Total: -99.16 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.06 Total: -27.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.73 3.05 -70.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.255 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds