Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46826 * 2 1 4 4 C 1.46497 * 119.99928 * 270.00233 * 3 2 1 5 5 C 1.50706 * 109.47173 * 270.00119 * 4 3 2 6 6 H 1.08004 * 119.99569 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99789 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00016 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47360 * 59.99621 * 9 7 5 11 11 H 1.48495 * 109.47147 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46972 * 299.99797 * 9 7 5 13 13 C 1.34778 * 120.00051 * 90.00327 * 3 2 1 14 14 O 1.21278 * 120.00010 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99817 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46876 * 174.49828 * 15 13 3 17 17 C 1.46844 * 111.00067 * 300.43658 * 16 15 13 18 18 C 1.53033 * 109.52556 * 185.83834 * 17 16 15 19 19 C 1.53112 * 109.28044 * 300.82398 * 18 17 16 20 20 C 1.53121 * 109.16296 * 57.65185 * 19 18 17 21 21 H 1.08995 * 109.50633 * 182.40937 * 20 19 18 22 22 C 1.52996 * 109.50014 * 62.28607 * 20 19 18 23 23 C 1.46840 * 111.00153 * 64.64680 * 16 15 13 24 24 H 1.09000 * 109.46721 * 294.17851 * 23 16 15 25 25 C 1.53003 * 109.46481 * 54.14390 * 23 16 15 26 26 H 1.09001 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46741 * 299.99663 * 1 2 3 28 28 H 1.08997 * 109.47212 * 60.00267 * 1 2 3 29 29 H 1.09000 * 109.46741 * 240.00337 * 2 1 3 30 30 H 1.08997 * 109.47212 * 119.99733 * 2 1 3 31 31 H 1.09000 * 109.47729 * 29.99716 * 4 3 2 32 32 H 1.09001 * 109.47516 * 150.00119 * 4 3 2 33 33 H 0.97002 * 119.99434 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46928 * 54.49865 * 15 13 3 35 35 H 1.09006 * 109.47590 * 294.49618 * 15 13 3 36 36 H 1.09010 * 109.46299 * 305.85678 * 17 16 15 37 37 H 1.09003 * 109.46240 * 65.81953 * 17 16 15 38 38 H 1.09000 * 109.50146 * 180.87758 * 18 17 16 39 39 H 1.09006 * 109.53139 * 60.78448 * 18 17 16 40 40 H 1.09003 * 109.51943 * 297.74414 * 19 18 17 41 41 H 1.09000 * 109.57720 * 177.59021 * 19 18 17 42 42 H 1.09001 * 109.47327 * 300.19443 * 22 20 19 43 43 H 1.09005 * 109.47361 * 60.20334 * 22 20 19 44 44 H 1.09004 * 109.46673 * 180.19700 * 22 20 19 45 45 H 1.09009 * 109.46951 * 53.19971 * 25 23 16 46 46 H 1.08996 * 109.47757 * 173.20209 * 25 23 16 47 47 H 1.09004 * 109.47345 * 293.20290 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1266 -3.6176 9 14 5.9137 2.0976 -3.4165 10 1 6.1417 0.6410 -3.5943 11 1 6.1612 2.7975 -4.7025 12 1 6.8409 2.6210 -2.3811 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.4331 2.1568 3.5857 17 6 3.8645 2.4657 3.4762 18 6 4.3201 3.2276 4.7228 19 6 3.5083 4.5196 4.8505 20 6 2.0183 4.1728 4.9140 21 1 1.4327 5.0908 4.9619 22 6 1.7437 3.3252 6.1578 23 6 1.6295 3.3835 3.6618 24 1 1.8124 3.9931 2.7769 25 6 0.1455 3.0174 3.7304 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6753 3.5171 -4.4435 34 1 2.5470 0.3687 2.4886 35 1 0.9260 1.0992 2.5738 36 1 4.4307 1.5382 3.3903 37 1 4.0370 3.0795 2.5921 38 1 5.3790 3.4703 4.6341 39 1 4.1612 2.6092 5.6062 40 1 3.6978 5.1557 3.9858 41 1 3.7991 5.0452 5.7600 42 1 2.3311 2.4083 6.1096 43 1 2.0208 3.8879 7.0493 44 1 0.6835 3.0757 6.2006 45 1 -0.0171 2.3104 4.5441 46 1 -0.4430 3.9174 3.9081 47 1 -0.1607 2.5633 2.7880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172857022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -40.387933 kcal Electronic energy + Delta-G solvation = -24328.813124 eV Core-core repulsion = 21125.227657 eV Total energy + Delta-G solvation = -3203.585467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23089 -38.22842 -35.35782 -33.80046 -32.74987 -32.63348 -30.09445 -28.64512 -27.59898 -26.27393 -25.73211 -23.16098 -22.84478 -21.95397 -21.15369 -18.68370 -18.03090 -16.55653 -16.29270 -15.92187 -15.32314 -15.15331 -14.88736 -14.34221 -14.25014 -14.07301 -13.39734 -13.18831 -13.04037 -12.76556 -12.43512 -12.17715 -12.03336 -11.97633 -11.79375 -11.76401 -11.56630 -11.29637 -11.21688 -11.11930 -10.92734 -10.69074 -10.54828 -10.40496 -10.35855 -10.13100 -10.01737 -9.86404 -9.63536 -9.50480 -8.44268 -7.64980 -7.60320 -6.05194 -4.10003 3.30345 3.34726 3.35526 3.41770 3.98096 4.16237 4.43879 4.89150 4.96350 5.05841 5.15844 5.27350 5.29335 5.35117 5.50030 5.54486 5.59347 5.63806 5.66515 5.71011 5.75232 5.79499 5.84201 5.92869 5.97388 6.03854 6.07746 6.15071 6.17075 6.22630 6.29756 6.32706 6.41494 6.48129 6.51114 6.56809 6.72558 7.04034 7.29425 7.39480 7.44283 7.55938 7.91155 8.23177 8.43602 8.89207 9.09425 9.55170 11.02767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.005275 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.180579 B = 5307.178092 C = 6156.639454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.475 3.525 14 O -0.540 6.540 15 C 0.028 3.972 16 N -0.506 5.506 17 C 0.036 3.964 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.080 4.080 21 H 0.065 0.935 22 C -0.139 4.139 23 C 0.067 3.933 24 H 0.079 0.921 25 C -0.146 4.146 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 -3.993 15.984 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.261 3.739 14 O -0.419 6.419 15 C -0.103 4.103 16 N -0.230 5.230 17 C -0.092 4.092 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.099 4.099 21 H 0.084 0.916 22 C -0.196 4.196 23 C -0.041 4.041 24 H 0.097 0.903 25 C -0.203 4.203 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.975 -3.538 16.234 17.344 hybrid contribution 1.081 0.178 -1.317 1.713 sum -3.894 -3.360 14.917 15.779 Atomic orbital electron populations 1.22210 0.96790 1.01423 1.02221 1.21421 0.93511 0.84297 1.02657 1.48419 1.63149 1.13167 1.08028 1.19229 0.96147 0.93557 0.78410 1.21380 0.96904 1.31873 1.06231 0.92669 1.24928 0.97783 0.94927 0.96402 1.69925 1.35708 1.33417 1.14355 0.86578 0.84867 0.78255 0.77828 1.20251 1.21168 1.20234 1.21647 0.78589 0.87449 0.86197 1.90562 1.46222 1.18230 1.86877 1.22401 1.02839 0.97410 0.87665 1.62444 1.03793 1.17563 1.39188 1.22318 0.87929 1.00077 0.98847 1.21550 0.98639 0.96436 0.98327 1.21592 0.94966 0.97488 1.01294 1.21130 0.96023 0.97717 0.95058 0.91619 1.21802 1.01367 1.00557 0.95893 1.21857 0.92338 0.91449 0.98438 0.90326 1.21933 0.95442 1.01438 1.01531 0.92134 0.93123 0.92134 0.90058 0.91656 0.95253 0.94102 0.92696 0.88807 0.88205 0.91812 0.90928 0.92136 0.91606 0.91988 0.92471 0.91279 0.94081 0.93111 0.91961 0.92570 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.67 5.96 -4.04 -0.02 1.64 16 3 N -0.60 -12.35 2.46 -175.06 -0.43 -12.78 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.48 9.54 7.07 -10.99 -0.08 9.46 16 14 O -0.54 -12.89 11.22 5.56 0.06 -12.83 16 15 C 0.03 0.43 4.16 -4.97 -0.02 0.41 16 16 N -0.51 -7.51 3.98 -228.12 -0.91 -8.42 16 17 C 0.04 0.57 5.00 -3.84 -0.02 0.55 16 18 C -0.11 -1.47 5.74 -26.66 -0.15 -1.62 16 19 C -0.12 -1.50 5.51 -26.61 -0.15 -1.64 16 20 C -0.08 -1.02 2.74 -90.54 -0.25 -1.27 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.14 -1.54 8.39 37.16 0.31 -1.22 16 23 C 0.07 0.99 1.75 -67.72 -0.12 0.88 16 24 H 0.08 1.48 5.69 -51.93 -0.30 1.19 16 25 C -0.15 -1.86 7.94 37.16 0.30 -1.57 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.07 0.86 6.29 -51.93 -0.33 0.53 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.29 7.10 -51.93 -0.37 0.93 16 35 H 0.10 1.33 5.34 -51.93 -0.28 1.06 16 36 H 0.06 0.97 8.12 -51.92 -0.42 0.55 16 37 H 0.07 1.44 5.67 -51.93 -0.29 1.14 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.80 6.58 -51.93 -0.34 0.46 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.53 6.58 -51.93 -0.34 0.19 16 45 H 0.06 0.72 6.81 -51.92 -0.35 0.36 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.68 6.64 -51.93 -0.34 0.34 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -31.28 349.33 -8.78 -40.05 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.21 Total: 1.12 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.27 Total: -3.37 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.60 Total: -47.15 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.06 Total: -12.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.28 -8.78 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172857022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.336 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds