Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47331 * 2 1 4 4 C 1.46498 * 119.99753 * 270.00291 * 3 2 1 5 5 C 1.50707 * 109.47252 * 90.00203 * 4 3 2 6 6 H 1.08000 * 119.99886 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00051 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99874 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47125 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47590 * 119.99694 * 9 7 5 12 12 H 1.48512 * 109.46936 * 239.99676 * 9 7 5 13 13 C 1.34774 * 120.00173 * 90.00069 * 3 2 1 14 14 O 1.21279 * 120.00121 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99607 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46705 * 179.97438 * 15 13 3 17 17 C 1.46845 * 111.00066 * 75.56524 * 16 15 13 18 18 C 1.53044 * 109.52324 * 185.83978 * 17 16 15 19 19 C 1.53121 * 109.27418 * 300.81765 * 18 17 16 20 20 C 1.53117 * 109.16421 * 57.65413 * 19 18 17 21 21 H 1.09004 * 109.49729 * 62.28395 * 20 19 18 22 22 C 1.52993 * 109.50286 * 182.36185 * 20 19 18 23 23 C 1.46851 * 110.99898 * 199.77247 * 16 15 13 24 24 H 1.09004 * 109.46118 * 294.17807 * 23 16 15 25 25 C 1.52999 * 109.46206 * 54.14199 * 23 16 15 26 26 H 1.08999 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47213 * 299.99730 * 1 2 3 28 28 H 1.08994 * 109.47480 * 60.00026 * 1 2 3 29 29 H 1.09009 * 109.46769 * 239.99856 * 2 1 3 30 30 H 1.09006 * 109.47274 * 120.00353 * 2 1 3 31 31 H 1.08999 * 109.47188 * 209.99510 * 4 3 2 32 32 H 1.09003 * 109.47639 * 329.99780 * 4 3 2 33 33 H 0.97003 * 119.99342 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47280 * 299.99370 * 15 13 3 35 35 H 1.08995 * 109.47229 * 60.00022 * 15 13 3 36 36 H 1.08999 * 109.46127 * 305.84896 * 17 16 15 37 37 H 1.09000 * 109.46821 * 65.82098 * 17 16 15 38 38 H 1.08996 * 109.50187 * 60.75900 * 18 17 16 39 39 H 1.09000 * 109.50046 * 180.87524 * 18 17 16 40 40 H 1.08999 * 109.51947 * 177.56222 * 19 18 17 41 41 H 1.09002 * 109.52133 * 297.74754 * 19 18 17 42 42 H 1.09001 * 109.47158 * 60.00369 * 22 20 19 43 43 H 1.09001 * 109.47027 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47461 * 300.00134 * 22 20 19 45 45 H 1.08999 * 109.47026 * 52.77536 * 25 23 16 46 46 H 1.09000 * 109.47058 * 172.77285 * 25 23 16 47 47 H 1.09000 * 109.47206 * 292.77187 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7248 -1.0961 7 6 0.9948 3.5048 -2.8780 8 7 2.0797 3.5743 -3.6181 9 14 -0.5616 4.3860 -3.4167 10 1 -1.6339 4.1532 -2.4161 11 1 -0.2934 5.8426 -3.5256 12 1 -0.9951 3.8624 -4.7371 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3059 2.4722 16 7 2.3111 2.2058 3.5888 17 6 1.2601 3.2156 3.7673 18 6 1.6923 4.2198 4.8384 19 6 1.9426 3.4784 6.1546 20 6 3.0062 2.4001 5.9297 21 1 3.9430 2.8700 5.6300 22 6 3.2200 1.6154 7.2256 23 6 2.5360 1.4489 4.8270 24 1 1.6064 0.9690 5.1332 25 6 3.6048 0.3812 4.5848 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.0643 2.7984 -1.1385 32 1 2.5505 1.3451 -2.0285 33 1 2.0714 4.0830 -4.4441 34 1 0.9445 1.0114 2.5302 35 1 2.6229 0.4187 2.5298 36 1 1.0949 3.7383 2.8252 37 1 0.3365 2.7276 4.0785 38 1 2.6083 4.7182 4.5215 39 1 0.9053 4.9602 4.9817 40 1 2.2923 4.1834 6.9088 41 1 1.0168 3.0122 6.4918 42 1 2.2832 1.1447 7.5240 43 1 3.9768 0.8477 7.0648 44 1 3.5518 2.2945 8.0110 45 1 4.4925 0.8464 4.1563 46 1 3.8644 -0.0942 5.5307 47 1 3.2188 -0.3693 3.8949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172857031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -42.203278 kcal Electronic energy + Delta-G solvation = -23825.256087 eV Core-core repulsion = 20621.591900 eV Total energy + Delta-G solvation = -3203.664187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85738 -38.40978 -35.20737 -34.11684 -33.05766 -32.66569 -29.94228 -28.88864 -27.73526 -26.27147 -25.82659 -23.01314 -22.70505 -21.46939 -21.23179 -19.58601 -18.18133 -16.64045 -16.43114 -15.63596 -15.37473 -14.93546 -14.66800 -14.58644 -14.27813 -13.98265 -13.68201 -13.14534 -12.97814 -12.75988 -12.66949 -12.33528 -12.18900 -12.10565 -12.04847 -11.71503 -11.62827 -11.40820 -11.25795 -11.13912 -10.86883 -10.83308 -10.67755 -10.57258 -10.47957 -10.20781 -10.06391 -9.99327 -9.50897 -8.78520 -8.39259 -8.00388 -7.55974 -5.99961 -4.03642 3.31232 3.38842 3.41883 3.57145 3.70425 4.28649 4.48711 4.66575 4.71096 4.88009 5.08349 5.21634 5.29327 5.32594 5.34042 5.36067 5.41356 5.47053 5.51694 5.54290 5.58139 5.75002 5.76813 5.78834 5.82618 5.85603 5.88245 5.98032 6.02385 6.07234 6.14944 6.22629 6.25647 6.33828 6.36769 6.50590 6.78114 7.07038 7.25610 7.34047 7.52648 7.65842 7.97759 8.29889 8.54126 8.97306 9.25460 9.61306 11.08174 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.004407 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.153321 B = 6351.933816 C = 6891.015291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.603 5.603 4 C 0.247 3.753 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.030 3.970 16 N -0.514 5.514 17 C 0.059 3.941 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.084 4.084 21 H 0.080 0.920 22 C -0.147 4.147 23 C 0.088 3.912 24 H 0.036 0.964 25 C -0.154 4.154 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.023 0.977 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -8.157 18.533 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.336 5.336 4 C 0.128 3.872 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.293 3.707 14 O -0.397 6.397 15 C -0.101 4.101 16 N -0.238 5.238 17 C -0.069 4.069 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.103 4.103 21 H 0.098 0.902 22 C -0.205 4.205 23 C -0.020 4.020 24 H 0.054 0.946 25 C -0.211 4.211 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.283 -7.212 18.227 19.604 hybrid contribution -1.761 -0.017 -0.323 1.790 sum -1.478 -7.229 17.904 19.365 Atomic orbital electron populations 1.22230 0.96551 1.00742 1.03242 1.21346 0.94388 0.84024 1.01421 1.48268 1.64493 1.13136 1.07744 1.19250 0.97432 0.92417 0.78101 1.21488 0.97525 1.30828 1.05991 0.92397 1.24932 0.96352 0.96357 0.96539 1.69946 1.27385 1.41790 1.14348 0.86498 0.83314 0.79652 0.78271 1.19891 1.20926 1.21053 1.20162 0.78902 0.87052 0.84628 1.90652 1.44904 1.17341 1.86845 1.22182 1.00508 0.96297 0.91078 1.61513 1.45002 1.14267 1.03053 1.22124 0.90837 0.93475 1.00467 1.21550 1.02170 0.97479 0.94052 1.21653 0.98455 0.97564 0.97581 1.21164 0.99674 0.95572 0.93871 0.90167 1.21889 1.01525 1.00139 0.96922 1.21613 0.97248 0.93367 0.89814 0.94650 1.22046 0.99580 0.97901 1.01582 0.92933 0.93528 0.90549 0.90771 0.92359 0.93946 0.95236 0.92876 0.92630 0.88287 0.89322 0.95834 0.90757 0.91798 0.92039 0.92590 0.92988 0.92260 0.92661 0.91374 0.91813 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.11 1.82 5.97 -4.04 -0.02 1.80 16 3 N -0.60 -12.85 2.46 -175.05 -0.43 -13.28 16 4 C 0.25 6.51 5.20 -5.19 -0.03 6.48 16 5 C -0.52 -14.68 8.92 -34.44 -0.31 -14.98 16 6 H 0.06 1.64 7.42 -52.49 -0.39 1.25 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 10.75 7.38 -10.99 -0.08 10.67 16 14 O -0.52 -13.40 14.74 5.56 0.08 -13.32 16 15 C 0.03 0.48 3.87 -4.97 -0.02 0.46 16 16 N -0.51 -7.91 4.05 -228.12 -0.92 -8.84 16 17 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16 18 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 19 C -0.11 -1.23 5.29 -26.61 -0.14 -1.37 16 20 C -0.08 -0.90 2.40 -90.55 -0.22 -1.12 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 22 C -0.15 -1.23 8.88 37.15 0.33 -0.90 16 23 C 0.09 1.05 1.96 -67.72 -0.13 0.92 16 24 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 25 C -0.15 -1.62 8.46 37.16 0.31 -1.30 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.71 7.22 -51.93 -0.38 0.34 16 28 H 0.08 1.41 7.26 -51.93 -0.38 1.03 16 29 H 0.07 1.17 7.89 -51.92 -0.41 0.76 16 30 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 34 H 0.06 0.82 7.05 -51.93 -0.37 0.46 16 35 H 0.10 1.35 4.67 -51.93 -0.24 1.11 16 36 H 0.09 1.68 6.69 -51.93 -0.35 1.33 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.54 6.11 -51.93 -0.32 0.23 16 47 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -32.42 357.22 -8.78 -41.20 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.40 Total: -1.33 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.20 Total: -0.74 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.62 Total: -48.20 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.42 -8.78 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172857031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.007 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds