Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 C 1.53004 * 109.46930 * 119.99573 * 2 1 3 5 5 C 1.52999 * 109.47163 * 65.00057 * 4 2 1 6 6 N 1.46901 * 109.47261 * 178.08127 * 5 4 2 7 7 C 1.46896 * 111.00009 * 287.88893 * 6 5 4 8 8 C 1.50704 * 109.47372 * 298.52730 * 7 6 5 9 9 H 1.08003 * 119.99552 * 4.78203 * 8 7 6 10 10 C 1.37877 * 120.00376 * 184.78641 * 8 7 6 11 11 N 1.31516 * 119.99850 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00250 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46950 * 59.99904 * 12 10 8 14 14 H 1.48500 * 109.47413 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47214 * 299.99841 * 12 10 8 16 16 C 1.46898 * 110.99668 * 163.93576 * 6 5 4 17 17 C 1.53002 * 109.46746 * 190.00006 * 16 6 5 18 18 N 1.46903 * 109.47055 * 180.02562 * 17 16 6 19 19 C 1.46851 * 111.00000 * 45.78795 * 18 17 16 20 20 C 1.53041 * 109.52026 * 185.84037 * 19 18 17 21 21 C 1.53116 * 109.28032 * 300.82292 * 20 19 18 22 22 C 1.53114 * 109.16077 * 57.65348 * 21 20 19 23 23 C 1.46850 * 111.00049 * 170.00028 * 18 17 16 24 24 H 1.08998 * 109.47275 * 60.00327 * 1 2 3 25 25 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47218 * 300.00408 * 1 2 3 27 27 H 1.08998 * 109.47218 * 239.99592 * 2 1 3 28 28 H 1.09005 * 109.46803 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46870 * 299.99365 * 3 2 1 30 30 H 1.08998 * 109.47245 * 60.00251 * 3 2 1 31 31 H 1.09002 * 109.47138 * 305.00437 * 4 2 1 32 32 H 1.09002 * 109.47107 * 185.00149 * 4 2 1 33 33 H 1.09008 * 109.46910 * 58.07780 * 5 4 2 34 34 H 1.09004 * 109.47129 * 298.08601 * 5 4 2 35 35 H 1.08997 * 109.47332 * 58.52277 * 7 6 5 36 36 H 1.09000 * 109.47060 * 178.52661 * 7 6 5 37 37 H 0.97001 * 120.00349 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47375 * 70.00168 * 16 6 5 39 39 H 1.08999 * 109.47485 * 309.99765 * 16 6 5 40 40 H 1.08993 * 109.47037 * 60.00430 * 17 16 6 41 41 H 1.08999 * 109.47317 * 299.99425 * 17 16 6 42 42 H 1.08996 * 109.45750 * 65.82897 * 19 18 17 43 43 H 1.08990 * 109.46209 * 305.85599 * 19 18 17 44 44 H 1.09003 * 109.49912 * 180.88081 * 20 19 18 45 45 H 1.09000 * 109.50149 * 60.76499 * 20 19 18 46 46 H 1.08997 * 109.52835 * 177.56613 * 21 20 19 47 47 H 1.09005 * 109.52040 * 297.74962 * 21 20 19 48 48 H 1.08997 * 109.50625 * 62.29183 * 22 21 20 49 49 H 1.09010 * 109.50464 * 182.40224 * 22 21 20 50 50 H 1.08999 * 109.45767 * 54.14457 * 23 18 17 51 51 H 1.08995 * 109.46188 * 294.17277 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1882 6 7 2.1641 -2.8977 2.3651 7 6 3.6205 -3.0635 2.2687 8 6 3.9523 -3.8958 1.0570 9 1 3.1680 -4.1997 0.3794 10 6 5.2569 -4.2694 0.8133 11 7 6.2119 -3.8990 1.6382 12 14 5.6681 -5.3016 -0.6882 13 1 5.2693 -4.5689 -1.9168 14 1 7.1290 -5.5660 -0.7224 15 1 4.9329 -6.5900 -0.6197 16 6 1.4976 -4.1939 2.5481 17 6 1.8878 -4.7806 3.9062 18 7 1.2218 -6.0772 4.0890 19 6 1.3382 -6.9037 2.8807 20 6 0.5131 -8.1809 3.0534 21 6 1.0245 -8.9522 4.2732 22 6 0.9377 -8.0527 5.5092 23 6 1.7506 -6.7792 5.2655 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6052 -0.2616 2.1370 32 1 3.1263 -0.6443 1.2953 33 1 2.0415 -2.6465 0.2828 34 1 0.5480 -2.2735 1.1765 35 1 4.0923 -2.0852 2.1777 36 1 3.9893 -3.5629 3.1646 37 1 7.1299 -4.1614 1.4667 38 1 1.8056 -4.8760 1.7556 39 1 0.4171 -4.0557 2.5089 40 1 1.5797 -4.0986 4.6986 41 1 2.9682 -4.9190 3.9454 42 1 2.3838 -7.1658 2.7195 43 1 0.9672 -6.3450 2.0216 44 1 0.6122 -8.8014 2.1627 45 1 -0.5349 -7.9200 3.2010 46 1 0.4120 -9.8408 4.4256 47 1 2.0611 -9.2471 4.1094 48 1 -0.1035 -7.7898 5.6956 49 1 1.3402 -8.5816 6.3733 50 1 1.6790 -6.1300 6.1382 51 1 2.7942 -7.0419 5.0930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173547472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -22.950673 kcal Electronic energy + Delta-G solvation = -23745.403179 eV Core-core repulsion = 20678.406943 eV Total energy + Delta-G solvation = -3066.996236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.87963 -37.40621 -35.49674 -33.34852 -32.33502 -30.68631 -29.15077 -27.66452 -26.87570 -25.86187 -23.96066 -23.16682 -22.72858 -21.07571 -19.62809 -19.38178 -19.09827 -16.37260 -16.00635 -15.19144 -14.85195 -14.62480 -14.43625 -14.23034 -14.15864 -13.75737 -13.55229 -13.24463 -13.08429 -12.74367 -12.46711 -12.29008 -12.03031 -11.90386 -11.69055 -11.60346 -11.17887 -11.04380 -10.99740 -10.83013 -10.74534 -10.68179 -10.33990 -10.32116 -10.28064 -10.18080 -10.10488 -9.93563 -9.78829 -9.69016 -9.48246 -8.42619 -7.85453 -7.10011 -6.03046 -4.11514 3.25386 3.31005 3.33000 4.22638 4.38584 4.93384 5.02047 5.04774 5.10923 5.26426 5.26937 5.32375 5.40692 5.49805 5.64667 5.70805 5.80906 5.82066 5.83406 5.87607 5.93445 5.97548 6.02709 6.04999 6.07454 6.09975 6.16908 6.19273 6.24695 6.27592 6.31963 6.34622 6.40877 6.46935 6.52468 6.60705 6.63737 6.69554 6.83555 6.93644 7.01555 7.29072 7.51702 7.52524 7.55226 7.91061 8.11380 8.30481 8.36079 8.98657 9.54323 11.01414 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.005372 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.462955 B = 5211.099784 C = 6762.845673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.062 3.938 6 N -0.544 5.544 7 C 0.184 3.816 8 C -0.544 4.544 9 H 0.054 0.946 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.883 3.117 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.064 3.936 17 C 0.063 3.937 18 N -0.537 5.537 19 C 0.048 3.952 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.114 4.114 23 C 0.055 3.945 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 -1.652 2.576 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.066 4.066 6 N -0.268 5.268 7 C 0.058 3.942 8 C -0.583 4.583 9 H 0.073 0.927 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.711 3.289 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 C -0.065 4.065 17 C -0.065 4.065 18 N -0.263 5.263 19 C -0.080 4.080 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.073 4.073 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.254 -1.277 3.118 11.747 hybrid contribution 1.545 -1.285 -1.753 2.667 sum -9.709 -2.562 1.365 10.134 Atomic orbital electron populations 1.21863 0.95920 1.01587 1.00819 1.21103 0.95278 0.95858 0.99380 1.21813 1.01116 0.96313 1.00882 1.21530 1.01572 0.94931 0.96083 1.21954 0.97290 0.93833 0.93522 1.62408 1.07851 1.18406 1.38114 1.19797 0.81637 0.96562 0.96165 1.21659 0.93015 1.33597 1.10025 0.92747 1.24921 0.96502 0.95954 0.96247 1.69929 1.00579 1.45756 1.36637 0.86798 0.77345 0.80954 0.83806 1.20247 1.21215 1.20347 1.21967 0.97016 0.91651 0.95871 1.22051 0.97203 0.88899 0.98310 1.62017 1.57034 1.03976 1.03247 1.22178 0.98598 0.93711 0.93464 1.21596 1.00278 0.96006 0.97489 1.21577 1.00978 0.97863 0.95484 1.21560 1.00964 0.95394 0.97251 1.22037 0.96308 0.95093 0.93860 0.93599 0.92570 0.92997 0.91462 0.92699 0.93419 0.93021 0.92435 0.91392 0.93807 0.93265 0.95306 0.94875 0.92842 0.93618 0.92723 0.91028 0.93632 0.94646 0.90048 0.92046 0.91465 0.92344 0.92405 0.91374 0.92074 0.91103 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 37.16 0.33 -1.51 16 2 C -0.10 -1.42 2.92 -90.62 -0.26 -1.69 16 3 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 4 C -0.10 -1.80 4.77 -26.73 -0.13 -1.93 16 5 C 0.06 1.19 4.51 -3.82 -0.02 1.18 16 6 N -0.54 -11.48 4.67 -236.07 -1.10 -12.58 16 7 C 0.18 4.62 4.77 -4.98 -0.02 4.60 16 8 C -0.54 -14.58 7.33 -34.44 -0.25 -14.83 16 9 H 0.05 1.46 5.95 -52.48 -0.31 1.15 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 12 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.06 1.24 4.02 -3.82 -0.02 1.23 16 17 C 0.06 1.17 5.20 -3.82 -0.02 1.15 16 18 N -0.54 -8.81 4.81 -234.67 -1.13 -9.94 16 19 C 0.05 0.79 4.85 -3.83 -0.02 0.77 16 20 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 21 C -0.12 -1.46 6.00 -26.61 -0.16 -1.62 16 22 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 23 C 0.06 0.81 5.42 -3.83 -0.02 0.79 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.35 6.67 -51.93 -0.35 1.01 16 33 H 0.04 0.94 6.19 -51.92 -0.32 0.62 16 34 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 35 H 0.03 0.78 6.62 -51.93 -0.34 0.44 16 36 H 0.03 0.90 6.36 -51.93 -0.33 0.57 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.05 0.98 4.62 -51.93 -0.24 0.74 16 39 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.37 5.81 -51.93 -0.30 1.07 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 50 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -27.68 375.36 -11.46 -39.13 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -9.93 Total: 1.45 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.67 Total: -14.87 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.49 Total: -47.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.68 -11.46 -39.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173547472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.184 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds