Wall clock time and date at job start Tue Mar 31 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00145 * 2 1 4 4 C 1.46906 * 110.99945 * 123.95421 * 2 1 3 5 5 C 1.53004 * 109.46870 * 66.04408 * 4 2 1 6 6 C 1.52998 * 109.46786 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47235 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99859 * 269.99863 * 7 6 5 9 9 C 1.50690 * 109.47279 * 269.99883 * 8 7 6 10 10 H 1.08008 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00231 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99869 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00306 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46852 * 60.00085 * 13 11 9 15 15 H 1.48496 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47214 * 299.99970 * 13 11 9 17 17 C 1.34778 * 120.00000 * 89.99623 * 7 6 5 18 18 O 1.21278 * 119.99842 * 0.02562 * 17 7 6 19 19 C 1.50703 * 119.99651 * 180.02562 * 17 7 6 20 20 C 1.53003 * 109.46728 * 180.02562 * 19 17 7 21 21 C 1.53786 * 113.61503 * 85.86370 * 20 19 17 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 19 23 23 C 1.53781 * 113.61337 * 183.47164 * 20 19 17 24 24 H 1.09008 * 109.47191 * 296.04656 * 1 2 3 25 25 H 1.08998 * 109.47303 * 56.04269 * 1 2 3 26 26 H 1.08995 * 109.47497 * 176.04778 * 1 2 3 27 27 H 1.08997 * 109.47039 * 183.95394 * 3 2 1 28 28 H 1.08996 * 109.46862 * 303.95939 * 3 2 1 29 29 H 1.09007 * 109.46781 * 63.95400 * 3 2 1 30 30 H 1.09000 * 109.47208 * 306.04579 * 4 2 1 31 31 H 1.08994 * 109.46619 * 186.04328 * 4 2 1 32 32 H 1.09000 * 109.47066 * 60.00084 * 5 4 2 33 33 H 1.08996 * 109.46804 * 299.99820 * 5 4 2 34 34 H 1.09004 * 109.47445 * 59.99706 * 6 5 4 35 35 H 1.08998 * 109.47251 * 300.00288 * 6 5 4 36 36 H 1.09000 * 109.46954 * 30.00192 * 8 7 6 37 37 H 1.09009 * 109.46848 * 149.99700 * 8 7 6 38 38 H 0.96998 * 120.00291 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47223 * 60.00290 * 19 17 7 40 40 H 1.08997 * 109.47305 * 299.99950 * 19 17 7 41 41 H 1.09002 * 112.85017 * 314.66753 * 20 19 17 42 42 H 1.08992 * 113.61675 * 254.61398 * 21 20 19 43 43 H 1.09000 * 113.60973 * 25.51686 * 21 20 19 44 44 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 45 45 H 1.09003 * 113.61268 * 89.11946 * 22 21 20 46 46 H 1.08999 * 113.61567 * 334.48261 * 23 20 19 47 47 H 1.09000 * 113.61379 * 105.30384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2427 0.9703 6 6 2.1791 -3.0403 2.1555 7 7 1.8311 -4.4543 1.9951 8 6 0.5742 -4.9664 2.5466 9 6 0.8021 -5.4428 3.9579 10 1 1.7848 -5.3709 4.4001 11 6 -0.2440 -5.9705 4.6848 12 7 -1.4408 -6.0575 4.1465 13 14 0.0386 -6.5617 6.4341 14 1 0.5197 -5.4305 7.2672 15 1 -1.2355 -7.0807 6.9931 16 1 1.0561 -7.6434 6.4327 17 6 2.6673 -5.2840 1.3401 18 8 3.7080 -4.8601 0.8839 19 6 2.3089 -6.7384 1.1747 20 6 3.4193 -7.4524 0.4012 21 6 4.5690 -7.9505 1.2929 22 6 4.5882 -9.2194 0.4195 23 6 3.1113 -8.9294 0.1039 24 1 -0.3634 0.4513 0.9234 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0251 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9234 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6214 0.0451 33 1 0.5471 -2.3474 0.9323 34 1 1.7445 -2.6614 3.0805 35 1 3.2634 -2.9355 2.1940 36 1 -0.1725 -4.1723 2.5472 37 1 0.2209 -5.7969 1.9353 38 1 -2.1767 -6.4291 4.6577 39 1 1.3714 -6.8214 0.6248 40 1 2.1964 -7.1989 2.1562 41 1 3.7549 -6.8921 -0.4715 42 1 5.4751 -7.3501 1.2132 43 1 4.2721 -8.1356 2.3252 44 1 4.7415 -10.1376 0.9865 45 1 5.2434 -9.1422 -0.4482 46 1 2.4167 -9.3817 0.8118 47 1 2.8401 -9.1184 -0.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173832592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:26 Heat of formation + Delta-G solvation = -29.767295 kcal Electronic energy + Delta-G solvation = -22958.597816 eV Core-core repulsion = 19755.472894 eV Total energy + Delta-G solvation = -3203.124922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.44466 -38.04142 -37.40723 -35.04839 -32.93610 -31.63934 -29.70504 -27.59745 -27.33562 -25.83532 -25.26462 -23.46867 -22.96658 -21.87442 -20.58630 -19.02842 -18.17404 -16.61841 -16.21951 -15.74794 -15.41376 -15.22543 -15.00996 -14.64104 -14.42379 -14.12095 -13.94531 -13.67560 -12.81739 -12.64551 -12.38568 -12.18994 -12.11569 -12.02131 -11.74765 -11.60305 -11.57301 -11.40307 -11.21665 -11.09916 -10.93336 -10.88122 -10.75034 -10.28162 -10.23875 -10.02347 -9.95738 -9.81985 -9.71236 -8.89684 -8.55028 -8.32650 -7.66135 -6.18783 -4.26257 3.23008 3.28242 3.30549 3.53065 3.86856 4.15688 4.33288 4.94641 4.98086 5.07190 5.11360 5.14132 5.17170 5.20618 5.30231 5.39716 5.56880 5.61127 5.68848 5.73958 5.79337 5.80687 5.87690 5.93512 5.95742 6.03758 6.07556 6.09768 6.12453 6.19555 6.21257 6.41215 6.47284 6.54808 6.64134 6.66906 6.81445 6.93159 7.05836 7.08981 7.20232 7.59463 7.76692 8.06601 8.41365 8.80299 9.12280 9.42038 10.87694 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.005648 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.117181 B = 4956.159687 C = 7261.060725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.123 3.877 7 N -0.597 5.597 8 C 0.239 3.761 9 C -0.537 4.537 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.892 5.892 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.518 3.482 18 O -0.575 6.575 19 C -0.126 4.126 20 C -0.091 4.091 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 4.199 -6.806 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.327 5.327 8 C 0.119 3.881 9 C -0.576 4.576 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.165 4.165 20 C -0.110 4.110 21 C -0.170 4.170 22 C -0.181 4.181 23 C -0.176 4.176 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.373 4.135 -7.415 10.047 hybrid contribution -0.487 0.127 1.905 1.970 sum 4.886 4.262 -5.510 8.509 Atomic orbital electron populations 1.22440 0.87418 1.02776 1.00073 1.61983 1.08098 1.13373 1.43785 1.22365 1.00716 0.89098 1.00154 1.22083 1.00011 0.94001 0.90832 1.21937 1.01452 0.93181 1.00089 1.21158 1.00319 0.81535 0.97169 1.48212 1.22715 1.07844 1.53979 1.19396 0.79833 0.95186 0.93718 1.21471 0.95992 1.41710 0.98424 0.92210 1.24933 0.94907 0.95482 0.98421 1.69911 1.00523 1.45018 1.37540 0.86596 0.77515 0.79254 0.84348 1.20192 1.21148 1.20057 1.20553 0.83151 0.88380 0.77258 1.90567 1.25618 1.78296 1.51157 1.21634 0.99223 0.92804 1.02883 1.22298 0.95359 0.94226 0.99089 1.22956 0.99181 0.96392 0.98466 1.22844 0.97067 0.98179 0.99966 1.22975 0.96656 0.96730 1.01263 0.95673 0.91783 0.90738 0.91463 0.91647 0.95867 0.94740 0.90805 0.91130 0.91815 0.90851 0.91152 0.94878 0.94353 0.92488 0.89468 0.87973 0.88952 0.91674 0.90273 0.91945 0.90685 0.89976 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.07 0.56 0.82 16 2 N -0.55 -7.30 5.02 -251.25 -1.26 -8.56 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 5 C -0.13 -2.10 5.46 -26.73 -0.15 -2.25 16 6 C 0.12 2.28 5.41 -4.04 -0.02 2.26 16 7 N -0.60 -12.58 2.46 -175.06 -0.43 -13.01 16 8 C 0.24 5.60 4.97 -5.20 -0.03 5.58 16 9 C -0.54 -13.81 9.28 -34.45 -0.32 -14.13 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 13 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 C 0.52 10.83 7.67 -10.98 -0.08 10.74 16 18 O -0.57 -12.92 15.37 5.56 0.09 -12.84 16 19 C -0.13 -2.32 4.08 -27.88 -0.11 -2.43 16 20 C -0.09 -1.46 3.11 -89.80 -0.28 -1.74 16 21 C -0.13 -2.02 7.65 -25.77 -0.20 -2.22 16 22 C -0.14 -1.82 8.09 -25.78 -0.21 -2.03 16 23 C -0.14 -1.87 7.64 -25.92 -0.20 -2.07 16 24 H 0.02 0.30 8.14 -51.92 -0.42 -0.13 16 25 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.33 7.42 -51.93 -0.39 0.94 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 0.93 6.44 -51.92 -0.33 0.59 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.09 1.55 7.40 -51.93 -0.38 1.17 16 40 H 0.10 2.01 7.73 -51.93 -0.40 1.60 16 41 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -28.22 375.23 -9.67 -37.89 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.86 Total: 3.25 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.58 Total: -4.19 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.95 Total: -45.14 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.22 -9.67 -37.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173832592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.126 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds