Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00145 * 2 1 4 4 C 1.46906 * 110.99945 * 123.95421 * 2 1 3 5 5 C 1.53004 * 109.46870 * 66.04408 * 4 2 1 6 6 C 1.52998 * 109.46786 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47235 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99859 * 269.99863 * 7 6 5 9 9 C 1.50690 * 109.47279 * 269.99883 * 8 7 6 10 10 H 1.08008 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00231 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99869 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00306 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46852 * 60.00085 * 13 11 9 15 15 H 1.48496 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47214 * 299.99970 * 13 11 9 17 17 C 1.34778 * 120.00000 * 89.99623 * 7 6 5 18 18 O 1.21278 * 119.99842 * 0.02562 * 17 7 6 19 19 C 1.50703 * 119.99651 * 180.02562 * 17 7 6 20 20 C 1.53003 * 109.46728 * 180.02562 * 19 17 7 21 21 C 1.53786 * 113.61503 * 85.86370 * 20 19 17 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 19 23 23 C 1.53781 * 113.61337 * 183.47164 * 20 19 17 24 24 H 1.09008 * 109.47191 * 296.04656 * 1 2 3 25 25 H 1.08998 * 109.47303 * 56.04269 * 1 2 3 26 26 H 1.08995 * 109.47497 * 176.04778 * 1 2 3 27 27 H 1.08997 * 109.47039 * 183.95394 * 3 2 1 28 28 H 1.08996 * 109.46862 * 303.95939 * 3 2 1 29 29 H 1.09007 * 109.46781 * 63.95400 * 3 2 1 30 30 H 1.09000 * 109.47208 * 306.04579 * 4 2 1 31 31 H 1.08994 * 109.46619 * 186.04328 * 4 2 1 32 32 H 1.09000 * 109.47066 * 60.00084 * 5 4 2 33 33 H 1.08996 * 109.46804 * 299.99820 * 5 4 2 34 34 H 1.09004 * 109.47445 * 59.99706 * 6 5 4 35 35 H 1.08998 * 109.47251 * 300.00288 * 6 5 4 36 36 H 1.09000 * 109.46954 * 30.00192 * 8 7 6 37 37 H 1.09009 * 109.46848 * 149.99700 * 8 7 6 38 38 H 0.96998 * 120.00291 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47223 * 60.00290 * 19 17 7 40 40 H 1.08997 * 109.47305 * 299.99950 * 19 17 7 41 41 H 1.09002 * 112.85017 * 314.66753 * 20 19 17 42 42 H 1.08992 * 113.61675 * 254.61398 * 21 20 19 43 43 H 1.09000 * 113.60973 * 25.51686 * 21 20 19 44 44 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 45 45 H 1.09003 * 113.61268 * 89.11946 * 22 21 20 46 46 H 1.08999 * 113.61567 * 334.48261 * 23 20 19 47 47 H 1.09000 * 113.61379 * 105.30384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2427 0.9703 6 6 2.1791 -3.0403 2.1555 7 7 1.8311 -4.4543 1.9951 8 6 0.5742 -4.9664 2.5466 9 6 0.8021 -5.4428 3.9579 10 1 1.7848 -5.3709 4.4001 11 6 -0.2440 -5.9705 4.6848 12 7 -1.4408 -6.0575 4.1465 13 14 0.0386 -6.5617 6.4341 14 1 0.5197 -5.4305 7.2672 15 1 -1.2355 -7.0807 6.9931 16 1 1.0561 -7.6434 6.4327 17 6 2.6673 -5.2840 1.3401 18 8 3.7080 -4.8601 0.8839 19 6 2.3089 -6.7384 1.1747 20 6 3.4193 -7.4524 0.4012 21 6 4.5690 -7.9505 1.2929 22 6 4.5882 -9.2194 0.4195 23 6 3.1113 -8.9294 0.1039 24 1 -0.3634 0.4513 0.9234 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0251 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9234 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6214 0.0451 33 1 0.5471 -2.3474 0.9323 34 1 1.7445 -2.6614 3.0805 35 1 3.2634 -2.9355 2.1940 36 1 -0.1725 -4.1723 2.5472 37 1 0.2209 -5.7969 1.9353 38 1 -2.1767 -6.4291 4.6577 39 1 1.3714 -6.8214 0.6248 40 1 2.1964 -7.1989 2.1562 41 1 3.7549 -6.8921 -0.4715 42 1 5.4751 -7.3501 1.2132 43 1 4.2721 -8.1356 2.3252 44 1 4.7415 -10.1376 0.9865 45 1 5.2434 -9.1422 -0.4482 46 1 2.4167 -9.3817 0.8118 47 1 2.8401 -9.1184 -0.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173832592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -44.651264 kcal Electronic energy + Delta-G solvation = -22959.243233 eV Core-core repulsion = 19755.472894 eV Total energy + Delta-G solvation = -3203.770339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01872 -39.30539 -38.55822 -36.77268 -34.78336 -33.20021 -31.10113 -29.21914 -28.49887 -27.18720 -26.41687 -25.00957 -24.56200 -23.16399 -21.79632 -20.24700 -19.84922 -18.58660 -17.84971 -17.29899 -16.59767 -16.51262 -16.35309 -16.21654 -15.70574 -15.53422 -15.18127 -14.93162 -14.39587 -14.35630 -13.76388 -13.52598 -13.30870 -13.26838 -13.16436 -13.13703 -12.78332 -12.68205 -12.64301 -12.55574 -12.42003 -12.35495 -12.22901 -12.03828 -11.72221 -11.52654 -11.41528 -11.16701 -11.00562 -10.67279 -10.47284 -9.44248 -9.33469 -8.20127 -6.34913 1.42348 1.43086 1.50793 1.82886 2.30119 2.45651 3.03596 3.09972 3.66084 3.81110 3.86870 3.90539 4.01621 4.08448 4.17704 4.24060 4.38891 4.44769 4.49575 4.58548 4.60505 4.66086 4.69442 4.73792 4.75645 4.78926 4.90739 4.92541 4.93940 4.99074 5.00299 5.09778 5.13925 5.15732 5.18304 5.20304 5.28385 5.44769 5.66273 5.69108 5.87214 6.02810 6.06684 6.10579 6.59223 6.82644 7.32548 7.45057 8.85124 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.005648 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.117181 B = 4956.159687 C = 7261.060725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.111 4.111 6 C 0.121 3.879 7 N -0.602 5.602 8 C 0.255 3.745 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.024 3.976 12 N -0.919 5.919 13 Si 0.954 3.046 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.271 1.271 17 C 0.512 3.488 18 O -0.591 6.591 19 C -0.120 4.120 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.131 4.131 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.018 0.982 37 H 0.030 0.970 38 H 0.268 0.732 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 3.998 -6.846 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.150 4.150 6 C -0.003 4.003 7 N -0.332 5.332 8 C 0.134 3.866 9 C -0.585 4.585 10 H 0.069 0.931 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.779 3.221 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.196 1.196 17 C 0.302 3.698 18 O -0.474 6.474 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.177 4.177 22 C -0.165 4.165 23 C -0.168 4.168 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.813 3.949 -7.461 10.249 hybrid contribution -0.618 0.254 1.893 2.007 sum 5.195 4.203 -5.568 8.698 Atomic orbital electron populations 1.22446 0.86924 1.02224 1.01052 1.61964 1.08735 1.14966 1.43247 1.22428 1.01052 0.87655 1.01145 1.21956 1.00388 0.92320 0.91565 1.21733 1.00568 0.94715 0.98028 1.21265 1.00184 0.80656 0.98157 1.48249 1.22060 1.08982 1.53870 1.19044 0.80370 0.94250 0.92907 1.21625 0.95620 1.41880 0.99374 0.93123 1.25612 0.94614 0.95492 1.01901 1.69998 1.01188 1.45654 1.38941 0.85669 0.77573 0.78812 0.80013 1.19924 1.20593 1.19566 1.21004 0.82777 0.89322 0.76742 1.90547 1.26201 1.78827 1.51828 1.21619 1.00470 0.91238 1.02582 1.22338 0.95001 0.95590 0.98666 1.22981 0.98341 0.98009 0.98404 1.22801 0.96564 0.97310 0.99833 1.22945 0.97393 0.94147 1.02313 0.95373 0.89969 0.92218 0.90982 0.90154 0.95237 0.94271 0.90304 0.92915 0.92515 0.90938 0.91421 0.96376 0.95165 0.92285 0.89150 0.89306 0.89803 0.92598 0.91109 0.90341 0.89264 0.90006 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.32 127.69 1.19 1.70 16 2 N -0.56 -14.41 5.02 -948.81 -4.76 -19.17 16 3 C 0.02 0.49 9.57 127.69 1.22 1.71 16 4 C 0.07 1.83 4.96 86.30 0.43 2.25 16 5 C -0.11 -3.73 5.46 30.60 0.17 -3.56 16 6 C 0.12 4.60 5.41 86.38 0.47 5.06 16 7 N -0.60 -25.96 2.46 -826.16 -2.03 -27.99 16 8 C 0.26 12.26 4.97 85.63 0.43 12.68 16 9 C -0.55 -28.37 9.28 25.60 0.24 -28.13 16 10 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 11 C 0.02 1.27 5.46 84.65 0.46 1.73 16 12 N -0.92 -50.18 13.29 21.45 0.28 -49.89 16 13 Si 0.95 41.47 29.54 68.60 2.03 43.50 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 17 C 0.51 21.84 7.67 87.66 0.67 22.51 16 18 O -0.59 -27.00 15.37 -3.02 -0.05 -27.04 16 19 C -0.12 -4.47 4.08 29.85 0.12 -4.34 16 20 C -0.10 -3.08 3.11 -10.26 -0.03 -3.11 16 21 C -0.14 -4.18 7.65 31.21 0.24 -3.94 16 22 C -0.13 -2.96 8.09 31.21 0.25 -2.71 16 23 C -0.13 -3.28 7.64 31.12 0.24 -3.04 16 24 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 26 H 0.06 1.55 6.47 -2.39 -0.02 1.54 16 27 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 28 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.96 6.55 -2.39 -0.02 1.95 16 34 H 0.07 2.74 8.07 -2.38 -0.02 2.72 16 35 H 0.07 2.60 7.42 -2.39 -0.02 2.58 16 36 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 37 H 0.03 1.50 6.44 -2.38 -0.02 1.48 16 38 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.09 3.27 7.40 -2.39 -0.02 3.25 16 40 H 0.09 3.56 7.73 -2.39 -0.02 3.54 16 41 H 0.08 2.81 7.73 -2.39 -0.02 2.79 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 44 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 2.07 8.10 -2.39 -0.02 2.06 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -59.31 375.23 2.46 -56.84 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.90 Total: 24.94 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.09 Total: -1.19 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -6.51 Total: -97.06 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -59.31 2.46 -56.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173832592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.193 kcal (2) G-P(sol) polarization free energy of solvation -59.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds