Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.09002 * 109.46702 * 59.70077 * 3 2 1 5 5 C 1.52995 * 109.47175 * 179.70613 * 3 2 1 6 6 N 1.46905 * 109.46934 * 174.99820 * 5 3 2 7 7 C 1.46898 * 111.00020 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47448 * 300.00386 * 8 7 6 10 10 C 1.53002 * 109.46649 * 60.00718 * 8 7 6 11 11 C 1.53000 * 109.46665 * 179.97438 * 8 7 6 12 12 C 1.50703 * 109.46778 * 179.97438 * 11 8 7 13 13 H 1.07997 * 119.99973 * 0.02562 * 12 11 8 14 14 C 1.37873 * 119.99989 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00120 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47001 * 60.00057 * 16 14 12 18 18 H 1.48501 * 109.47182 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46636 * 300.00303 * 16 14 12 20 20 N 1.46898 * 109.46920 * 299.71025 * 3 2 1 21 21 C 1.48542 * 110.99796 * 324.20293 * 20 3 2 22 22 C 1.54936 * 103.22674 * 159.72195 * 21 20 3 23 23 C 1.54588 * 102.92196 * 322.58799 * 22 21 20 24 24 C 1.47900 * 111.00492 * 81.59844 * 20 3 2 25 25 H 1.08999 * 109.47186 * 187.42621 * 1 2 3 26 26 H 1.09004 * 109.47081 * 307.42154 * 1 2 3 27 27 H 1.08990 * 109.47103 * 67.42633 * 1 2 3 28 28 H 1.08996 * 109.47450 * 239.99826 * 2 1 3 29 29 H 1.09007 * 109.47334 * 119.99743 * 2 1 3 30 30 H 1.09003 * 109.47283 * 294.99573 * 5 3 2 31 31 H 1.09000 * 109.47150 * 55.00094 * 5 3 2 32 32 H 1.00906 * 110.99857 * 56.04868 * 6 5 3 33 33 H 1.08999 * 109.47529 * 300.00429 * 7 6 5 34 34 H 1.09000 * 109.46580 * 60.00302 * 7 6 5 35 35 H 1.09005 * 109.47392 * 59.99542 * 9 8 7 36 36 H 1.08996 * 109.47469 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47361 * 300.00183 * 9 8 7 38 38 H 1.08999 * 109.47191 * 59.99770 * 10 8 7 39 39 H 1.09006 * 109.46679 * 180.02562 * 10 8 7 40 40 H 1.09001 * 109.46775 * 299.99007 * 10 8 7 41 41 H 1.09001 * 109.47359 * 300.00202 * 11 8 7 42 42 H 1.08998 * 109.47019 * 60.01135 * 11 8 7 43 43 H 0.96999 * 120.00272 * 180.02562 * 15 14 12 44 44 H 1.09005 * 110.66573 * 278.16186 * 21 20 3 45 45 H 1.08998 * 110.66674 * 41.28415 * 21 20 3 46 46 H 1.09003 * 110.72133 * 204.22210 * 22 21 20 47 47 H 1.09003 * 110.72270 * 80.94734 * 22 21 20 48 48 H 1.09002 * 110.30820 * 263.03538 * 23 22 21 49 49 H 1.08998 * 110.31006 * 140.87484 * 23 22 21 50 50 H 1.09000 * 109.91425 * 333.50646 * 24 20 3 51 51 H 1.08995 * 109.91909 * 94.80024 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6723 1.9579 0.8873 5 6 3.5700 1.4425 0.0074 6 7 4.0602 2.8221 -0.1133 7 6 5.5287 2.8612 -0.1091 8 6 6.0006 4.3110 -0.2369 9 6 5.4784 4.9038 -1.5471 10 6 5.4653 5.1271 0.9414 11 6 7.5300 4.3517 -0.2318 12 6 7.9949 5.7797 -0.3583 13 1 7.2718 6.5782 -0.4343 14 6 9.3433 6.0667 -0.3761 15 7 10.2239 5.0943 -0.2831 16 14 9.9195 7.8368 -0.5321 17 1 9.3991 8.6293 0.6107 18 1 11.4040 7.8763 -0.5273 19 1 9.4135 8.4116 -1.8044 20 7 1.5561 2.1329 -1.2029 21 6 1.5163 1.2104 -2.3664 22 6 0.5312 1.9075 -3.3381 23 6 -0.5322 2.5007 -2.3857 24 6 0.1682 2.6094 -1.0185 25 1 -0.3633 -1.0190 0.1328 26 1 -0.3633 0.6245 0.8162 27 1 -0.3633 0.3945 -0.9488 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9288 1.0098 0.9413 31 1 3.9374 0.8516 -0.8316 32 1 3.6812 3.4058 0.6173 33 1 5.9008 2.4384 0.8241 34 1 5.9099 2.2800 -0.9488 35 1 4.3887 4.8747 -1.5502 36 1 5.8142 5.9367 -1.6379 37 1 5.8596 4.3223 -2.3865 38 1 5.8374 4.7048 1.8748 39 1 5.8012 6.1602 0.8501 40 1 4.3757 5.0982 0.9382 41 1 7.9017 3.9295 0.7018 42 1 7.9117 3.7702 -1.0710 43 1 11.1725 5.2962 -0.2952 44 1 2.5037 1.1193 -2.8192 45 1 1.1366 0.2328 -2.0694 46 1 0.0805 1.1828 -4.0162 47 1 1.0338 2.6981 -3.8954 48 1 -1.3928 1.8353 -2.3181 49 1 -0.8418 3.4869 -2.7315 50 1 -0.3450 1.9842 -0.2878 51 1 0.1730 3.6471 -0.6851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174264128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -1.341150 kcal Electronic energy + Delta-G solvation = -23690.024993 eV Core-core repulsion = 20623.965816 eV Total energy + Delta-G solvation = -3066.059177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06034 -37.45817 -35.14876 -33.38939 -32.01910 -30.46000 -29.12532 -27.88333 -26.71944 -26.19035 -24.91887 -23.02461 -22.27019 -21.70645 -20.90826 -19.75841 -17.73637 -16.65815 -16.14653 -16.12469 -15.07924 -14.98496 -14.47793 -14.31611 -14.15833 -13.88795 -13.30986 -13.01134 -12.82747 -12.53156 -12.36105 -12.25499 -12.19015 -11.92060 -11.63260 -11.58347 -11.38712 -11.29187 -11.12142 -11.00630 -10.85733 -10.75136 -10.69915 -10.61452 -10.51512 -10.37347 -10.14098 -10.02505 -9.56015 -8.90496 -8.74423 -8.25017 -8.09345 -7.77654 -5.89812 -3.89476 3.39169 3.43308 3.45997 3.95302 4.38171 4.54258 4.57398 4.69306 4.79054 4.83242 4.92429 5.00634 5.21040 5.26459 5.40910 5.42862 5.45863 5.48519 5.61596 5.65197 5.70516 5.71680 5.74499 5.81010 5.85557 5.92348 5.95635 5.97936 6.03481 6.09992 6.12504 6.18023 6.37872 6.48075 6.64828 6.82982 6.93014 6.95685 6.99817 7.12648 7.32833 7.39437 7.40938 7.62284 7.78215 7.90534 7.97460 8.11358 8.56575 9.15994 9.72872 11.21957 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.003277 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.172446 B = 8541.768328 C = 8926.093676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.158 4.158 3 C 0.078 3.922 4 H 0.074 0.926 5 C 0.073 3.927 6 N -0.665 5.665 7 C 0.071 3.929 8 C -0.056 4.056 9 C -0.113 4.113 10 C -0.127 4.127 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.058 0.942 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 N -0.479 5.479 21 C 0.021 3.979 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.015 3.985 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.335 0.665 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.011 0.989 42 H 0.014 0.986 43 H 0.258 0.742 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.957 -10.204 -0.917 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C -0.032 4.032 4 H 0.092 0.908 5 C -0.058 4.058 6 N -0.296 5.296 7 C -0.058 4.058 8 C -0.057 4.057 9 C -0.171 4.171 10 C -0.185 4.185 11 C -0.004 4.004 12 C -0.543 4.543 13 H 0.076 0.924 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 N -0.202 5.202 21 C -0.106 4.106 22 C -0.161 4.161 23 C -0.168 4.168 24 C -0.112 4.112 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.445 -9.781 -1.679 23.630 hybrid contribution 0.219 0.015 1.104 1.125 sum -21.226 -9.766 -0.575 23.372 Atomic orbital electron populations 1.22162 0.96018 1.01486 1.02241 1.22201 0.96103 0.98591 1.02821 1.21894 0.95559 0.91965 0.93746 0.90780 1.21862 0.92863 0.91821 0.99234 1.60402 1.08004 1.08027 1.53123 1.22091 0.86304 0.98510 0.98916 1.20591 0.98544 0.91455 0.95095 1.21563 0.99137 1.00306 0.96056 1.21755 0.97770 1.01488 0.97472 1.19120 0.87566 0.96946 0.96733 1.21227 0.91248 0.92935 1.48915 0.92354 1.25014 0.97104 0.96708 0.95802 1.69959 1.01261 1.31331 1.51379 0.86736 0.77405 0.85714 0.78603 1.20385 1.21497 1.20314 1.64949 1.19257 1.33138 1.02881 1.23510 1.00111 0.95142 0.91838 1.22459 0.96316 1.00001 0.97366 1.22362 0.97811 1.01226 0.95389 1.23279 0.89514 1.01305 0.97144 0.92961 0.92461 0.91520 0.90774 0.91548 0.95908 0.91577 0.84663 0.96516 0.91948 0.93410 0.93097 0.94440 0.94346 0.91928 0.94702 0.97077 0.96792 0.93186 0.90177 0.92618 0.91712 0.90708 0.92135 0.91293 0.92409 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 7.88 37.16 0.29 -0.94 16 2 C -0.16 -1.37 4.87 -26.73 -0.13 -1.50 16 3 C 0.08 0.82 2.22 -67.71 -0.15 0.67 16 4 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 5 C 0.07 0.92 5.25 -3.82 -0.02 0.90 16 6 N -0.66 -10.05 5.44 -113.78 -0.62 -10.67 16 7 C 0.07 1.27 4.65 -3.82 -0.02 1.26 16 8 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 9 C -0.11 -2.31 8.06 37.15 0.30 -2.01 16 10 C -0.13 -2.46 7.89 37.16 0.29 -2.17 16 11 C 0.03 0.88 4.04 -27.88 -0.11 0.76 16 12 C -0.50 -14.15 7.65 -34.44 -0.26 -14.41 16 13 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 N -0.48 -5.34 4.88 -222.50 -1.09 -6.43 16 21 C 0.02 0.22 5.42 -1.89 -0.01 0.21 16 22 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 23 C -0.13 -1.10 6.38 -25.38 -0.16 -1.26 16 24 C 0.02 0.15 5.69 -2.76 -0.02 0.13 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 7.19 -51.93 -0.37 0.05 16 27 H 0.07 0.52 4.14 -51.93 -0.21 0.30 16 28 H 0.07 0.66 6.08 -51.93 -0.32 0.34 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.33 4.99 6.77 -39.29 -0.27 4.72 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.90 7.60 -51.93 -0.39 0.51 16 36 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 40 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.51 4.10 -51.93 -0.21 0.29 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.50 4.15 -51.93 -0.22 0.28 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -29.49 369.33 -10.40 -39.89 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -9.62 Total: 0.78 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -0.36 Total: -19.45 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.97 Total: -43.76 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.49 -10.40 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174264128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.552 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds