Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 H 1.09000 * 109.46857 * 302.51200 * 3 2 1 5 5 C 1.52998 * 109.46968 * 182.51355 * 3 2 1 6 6 N 1.46907 * 109.46771 * 184.70466 * 5 3 2 7 7 C 1.46899 * 110.99673 * 187.37671 * 6 5 3 8 8 C 1.53001 * 109.47147 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46953 * 300.00268 * 8 7 6 10 10 C 1.53003 * 109.46985 * 60.00237 * 8 7 6 11 11 C 1.52992 * 109.47499 * 180.02562 * 8 7 6 12 12 C 1.50699 * 109.47358 * 179.97438 * 11 8 7 13 13 H 1.08001 * 120.00071 * 359.97438 * 12 11 8 14 14 C 1.37876 * 119.99882 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00286 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99853 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47277 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47368 * 119.99946 * 16 14 12 19 19 H 1.48503 * 109.47014 * 240.00177 * 16 14 12 20 20 N 1.46900 * 109.47127 * 62.51123 * 3 2 1 21 21 C 1.48535 * 110.99941 * 82.87160 * 20 3 2 22 22 C 1.54934 * 103.22897 * 159.71971 * 21 20 3 23 23 C 1.54596 * 102.92130 * 322.58880 * 22 21 20 24 24 C 1.47898 * 111.00099 * 200.26764 * 20 3 2 25 25 H 1.09002 * 109.46691 * 304.80042 * 1 2 3 26 26 H 1.09002 * 109.47262 * 64.79948 * 1 2 3 27 27 H 1.09000 * 109.47168 * 184.80083 * 1 2 3 28 28 H 1.08999 * 109.47043 * 239.99643 * 2 1 3 29 29 H 1.08996 * 109.47005 * 120.00193 * 2 1 3 30 30 H 1.09002 * 109.47142 * 64.70709 * 5 3 2 31 31 H 1.09002 * 109.47290 * 304.70173 * 5 3 2 32 32 H 1.00899 * 110.99737 * 63.42730 * 6 5 3 33 33 H 1.09001 * 109.47342 * 300.00093 * 7 6 5 34 34 H 1.09008 * 109.47096 * 60.00496 * 7 6 5 35 35 H 1.09005 * 109.47430 * 60.00426 * 9 8 7 36 36 H 1.09010 * 109.46874 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.47459 * 299.99605 * 9 8 7 38 38 H 1.09001 * 109.47189 * 60.00089 * 10 8 7 39 39 H 1.08994 * 109.47113 * 180.02562 * 10 8 7 40 40 H 1.09003 * 109.46927 * 300.00157 * 10 8 7 41 41 H 1.09001 * 109.46986 * 300.00101 * 11 8 7 42 42 H 1.09007 * 109.47040 * 59.99736 * 11 8 7 43 43 H 0.97000 * 120.00485 * 179.97438 * 15 14 12 44 44 H 1.08999 * 110.66778 * 278.15875 * 21 20 3 45 45 H 1.09003 * 110.66665 * 41.28083 * 21 20 3 46 46 H 1.08997 * 110.72556 * 204.22649 * 22 21 20 47 47 H 1.09006 * 110.87516 * 81.01278 * 22 21 20 48 48 H 1.09006 * 110.30615 * 263.03828 * 23 22 21 49 49 H 1.08996 * 110.31106 * 140.87518 * 23 22 21 50 50 H 1.09006 * 109.91640 * 333.50796 * 24 20 3 51 51 H 1.08994 * 109.91709 * 94.80335 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6404 1.9691 -0.8666 5 6 3.5687 1.4429 -0.0633 6 7 4.0631 2.8216 0.0502 7 6 5.5125 2.8817 -0.1811 8 6 5.9893 4.3301 -0.0555 9 6 5.2709 5.1952 -1.0930 10 6 5.6748 4.8507 1.3484 11 6 7.4988 4.3930 -0.2970 12 6 7.9683 5.8197 -0.1740 13 1 7.2607 6.6033 0.0533 14 6 9.3011 6.1245 -0.3515 15 7 10.1628 5.1702 -0.6277 16 14 9.8832 7.8929 -0.1983 17 1 8.7264 8.7694 0.1162 18 1 10.8890 7.9905 0.8899 19 1 10.4969 8.3248 -1.4798 20 7 1.6006 2.1172 1.2286 21 6 2.5131 1.8107 2.3598 22 6 2.2365 2.9610 3.3602 23 6 2.0262 4.1812 2.4345 24 6 1.6369 3.5870 1.0682 25 1 -0.3633 0.5865 0.8439 26 1 -0.3634 0.4376 -0.9299 27 1 -0.3633 -1.0241 0.0860 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 3.8932 1.0175 -1.0130 31 1 3.9665 0.8456 0.7572 32 1 3.8230 3.2192 0.9459 33 1 6.0243 2.2650 0.5578 34 1 5.7365 2.5113 -1.1815 35 1 4.1954 5.1507 -0.9214 36 1 5.6103 6.2273 -1.0033 37 1 5.4950 4.8245 -2.0932 38 1 6.1866 4.2343 2.0876 39 1 6.0141 5.8826 1.4377 40 1 4.5993 4.8060 1.5200 41 1 8.0109 3.7765 0.4419 42 1 7.7225 4.0222 -1.2974 43 1 11.1005 5.3847 -0.7530 44 1 2.2650 0.8467 2.8038 45 1 3.5523 1.8280 2.0313 46 1 3.0936 3.1169 4.0153 47 1 1.3380 2.7604 3.9440 48 1 2.9494 4.7544 2.3487 49 1 1.2228 4.8113 2.8158 50 1 2.3801 3.8605 0.3191 51 1 0.6541 3.9525 0.7708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174264145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -3.052751 kcal Electronic energy + Delta-G solvation = -24342.282179 eV Core-core repulsion = 21276.148781 eV Total energy + Delta-G solvation = -3066.133398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20166 -37.25906 -35.22514 -33.61124 -32.09904 -30.45513 -28.97877 -27.67650 -26.83208 -26.37747 -25.16841 -23.09344 -22.16934 -21.85878 -20.84211 -19.75016 -17.89620 -16.69699 -16.25956 -16.08056 -15.21244 -14.71194 -14.64832 -14.29756 -14.04732 -13.63323 -13.47382 -13.31312 -12.83636 -12.74919 -12.41822 -12.24445 -12.02033 -11.98484 -11.66577 -11.47060 -11.35494 -11.23299 -11.08464 -11.00284 -10.95845 -10.78928 -10.76660 -10.62010 -10.58678 -10.37968 -10.22409 -10.11368 -9.71330 -9.05462 -8.85931 -8.43553 -8.33523 -7.97857 -5.97685 -3.97928 3.31254 3.39225 3.42525 3.94171 4.30663 4.48457 4.63117 4.69917 4.90667 5.01428 5.11282 5.18056 5.25373 5.34943 5.38239 5.45718 5.51659 5.57954 5.67538 5.69593 5.70889 5.80906 5.82695 5.84870 5.88032 5.93950 5.96605 6.03632 6.13951 6.15809 6.17901 6.27583 6.31068 6.34809 6.49932 6.62062 6.74158 6.79224 6.92457 7.06711 7.17358 7.18768 7.22713 7.34577 7.60606 7.68929 7.83224 8.02406 8.46624 9.07605 9.65070 11.14009 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.003864 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.224447 B = 7244.108262 C = 7718.217929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.077 3.923 4 H 0.086 0.914 5 C 0.023 3.977 6 N -0.691 5.691 7 C 0.066 3.934 8 C -0.058 4.058 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.034 3.966 12 C -0.506 4.506 13 H 0.060 0.940 14 C 0.054 3.946 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 N -0.506 5.506 21 C 0.019 3.981 22 C -0.124 4.124 23 C -0.138 4.138 24 C 0.010 3.990 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.344 0.656 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.258 0.742 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.104 -8.008 4.395 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.032 4.032 4 H 0.104 0.896 5 C -0.108 4.108 6 N -0.327 5.327 7 C -0.062 4.062 8 C -0.058 4.058 9 C -0.173 4.173 10 C -0.188 4.188 11 C -0.003 4.003 12 C -0.545 4.545 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 N -0.230 5.230 21 C -0.109 4.109 22 C -0.162 4.162 23 C -0.176 4.176 24 C -0.118 4.118 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.167 0.833 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.613 -8.049 3.815 20.635 hybrid contribution 1.781 0.724 0.660 2.033 sum -16.832 -7.325 4.475 18.894 Atomic orbital electron populations 1.21638 0.95253 1.00755 1.02313 1.21440 0.96700 0.95145 1.01444 1.21930 0.92385 0.95469 0.93422 0.89611 1.22619 0.95983 0.90889 1.01270 1.60979 1.15275 1.17712 1.38770 1.22156 0.85678 0.98240 1.00158 1.20622 0.98913 0.91488 0.94788 1.21601 0.97961 0.99947 0.97772 1.21846 0.97913 1.02462 0.96623 1.19118 0.87385 0.97100 0.96734 1.21267 0.92798 0.93399 1.46999 0.92236 1.25018 0.97099 0.96843 0.95648 1.69973 1.02736 1.31798 1.49214 0.86612 0.78765 0.85501 0.77581 1.19760 1.21184 1.21139 1.64892 1.47299 1.06750 1.04065 1.23472 0.95918 0.99212 0.92326 1.22473 1.01744 0.94586 0.97432 1.22506 1.02021 0.97854 0.95202 1.23311 1.02549 0.87689 0.98242 0.91313 0.93377 0.93712 0.92003 0.92327 0.90700 0.94921 0.83252 0.96014 0.91525 0.94104 0.92606 0.94101 0.94151 0.91552 0.94883 0.96974 0.96683 0.93210 0.90458 0.92815 0.91264 0.91048 0.90900 0.91290 0.89104 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.84 37.16 0.37 -0.92 16 2 C -0.11 -1.04 5.52 -26.73 -0.15 -1.19 16 3 C 0.08 0.85 2.14 -67.71 -0.14 0.71 16 4 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 5 C 0.02 0.29 4.48 -3.82 -0.02 0.27 16 6 N -0.69 -9.98 3.85 -113.77 -0.44 -10.42 16 7 C 0.07 1.15 4.63 -3.82 -0.02 1.13 16 8 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 9 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 10 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 11 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 12 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 13 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 N -0.51 -5.62 4.43 -222.50 -0.99 -6.60 16 21 C 0.02 0.20 5.30 -1.90 -0.01 0.19 16 22 C -0.12 -1.26 7.06 -24.87 -0.18 -1.44 16 23 C -0.14 -1.48 6.37 -25.37 -0.16 -1.64 16 24 C 0.01 0.11 5.70 -2.76 -0.02 0.10 16 25 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.03 0.42 6.41 -51.93 -0.33 0.08 16 32 H 0.34 4.80 2.01 -39.29 -0.08 4.72 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 36 H 0.05 1.15 6.62 -51.92 -0.34 0.80 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.03 0.52 4.52 -51.93 -0.23 0.28 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 45 H 0.05 0.66 4.21 -51.93 -0.22 0.45 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.85 5.92 -51.93 -0.31 0.54 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.20 5.12 -51.93 -0.27 0.93 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -28.27 365.55 -10.00 -38.27 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -9.50 Total: 2.75 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.30 Total: -19.94 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.69 Total: -43.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.27 -10.00 -38.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174264145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.212 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds