Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.53584 * 2 1 4 4 C 1.53119 * 109.50759 * 239.89150 * 2 1 3 5 5 C 1.53120 * 109.16202 * 182.40539 * 4 2 1 6 6 C 1.53041 * 109.27703 * 57.65829 * 5 4 2 7 7 N 1.46847 * 109.51486 * 300.81824 * 6 5 4 8 8 C 1.46899 * 110.99299 * 185.84807 * 7 6 5 9 9 C 1.53004 * 109.47044 * 45.79217 * 8 7 6 10 10 N 1.46899 * 109.47044 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99669 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46894 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47173 * 299.99910 * 12 11 10 14 14 C 1.52994 * 109.47331 * 59.99900 * 12 11 10 15 15 C 1.53003 * 109.47144 * 180.02562 * 12 11 10 16 16 C 1.50704 * 109.47304 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99829 * 359.97438 * 16 15 12 18 18 C 1.37870 * 119.99862 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99929 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00446 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47233 * 90.00076 * 20 18 16 22 22 H 1.48502 * 109.47250 * 210.00389 * 20 18 16 23 23 H 1.48503 * 109.47045 * 330.00273 * 20 18 16 24 24 C 1.46847 * 111.20163 * 61.75514 * 7 6 5 25 25 H 1.08996 * 109.47669 * 299.91065 * 1 2 3 26 26 H 1.09005 * 109.46876 * 59.90705 * 1 2 3 27 27 H 1.09002 * 109.47233 * 179.90234 * 1 2 3 28 28 H 1.08993 * 109.52284 * 302.31804 * 4 2 1 29 29 H 1.09003 * 109.51690 * 62.44224 * 4 2 1 30 30 H 1.08996 * 109.50328 * 177.59853 * 5 4 2 31 31 H 1.08996 * 109.50004 * 297.72216 * 5 4 2 32 32 H 1.09005 * 109.45785 * 60.83329 * 6 5 4 33 33 H 1.08994 * 109.46278 * 180.80636 * 6 5 4 34 34 H 1.09002 * 109.47485 * 165.78779 * 8 7 6 35 35 H 1.08997 * 109.47251 * 285.79717 * 8 7 6 36 36 H 1.08999 * 109.47327 * 300.00297 * 9 8 7 37 37 H 1.09007 * 109.46711 * 60.00088 * 9 8 7 38 38 H 1.00899 * 111.00432 * 303.95123 * 10 9 8 39 39 H 1.09004 * 109.47317 * 299.99824 * 11 10 9 40 40 H 1.09001 * 109.47158 * 60.00025 * 11 10 9 41 41 H 1.08996 * 109.47269 * 59.99876 * 13 12 11 42 42 H 1.08999 * 109.46994 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.47021 * 300.00247 * 13 12 11 44 44 H 1.09004 * 109.47132 * 60.00207 * 14 12 11 45 45 H 1.09003 * 109.47406 * 179.97438 * 14 12 11 46 46 H 1.08999 * 109.47338 * 299.99893 * 14 12 11 47 47 H 1.09004 * 109.47057 * 299.99633 * 15 12 11 48 48 H 1.09001 * 109.47169 * 59.99680 * 15 12 11 49 49 H 0.97001 * 120.00345 * 179.97438 * 19 18 16 50 50 H 1.09002 * 109.46448 * 178.23132 * 24 7 6 51 51 H 1.08994 * 109.45958 * 58.25497 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2486 5 6 3.5713 -0.7721 -1.2105 6 6 4.0229 -1.4730 0.0728 7 7 3.5091 -0.7418 1.2380 8 6 4.0372 -1.3053 2.4877 9 6 5.5424 -1.5398 2.3454 10 7 6.0705 -2.1027 3.5953 11 6 7.5167 -2.3410 3.4955 12 6 8.0291 -2.9266 4.8129 13 6 7.7517 -1.9420 5.9507 14 6 7.3127 -4.2484 5.0963 15 6 9.5354 -3.1742 4.7092 16 6 10.0400 -3.7516 6.0066 17 1 9.3550 -3.9242 6.8235 18 6 11.3764 -4.0584 6.1510 19 7 11.8168 -4.5618 7.2833 20 14 12.5614 -3.7592 4.7384 21 1 13.1204 -2.3874 4.8433 22 1 13.6659 -4.7499 4.8005 23 1 11.8400 -3.9023 3.4483 24 6 2.0408 -0.7233 1.2482 25 1 -0.3634 0.5124 0.8907 26 1 -0.3633 0.5153 -0.8892 27 1 -0.3634 -1.0277 -0.0018 28 1 1.6452 -1.7392 -1.2687 29 1 1.7149 -0.1879 -2.1397 30 1 3.9396 -1.3237 -2.0754 31 1 3.9678 0.2430 -1.2295 32 1 3.6374 -2.4926 0.0847 33 1 5.1120 -1.4962 0.1099 34 1 3.8537 -0.6093 3.3062 35 1 3.5402 -2.2524 2.6977 36 1 5.7259 -2.2358 1.5269 37 1 6.0394 -0.5927 2.1353 38 1 5.8561 -1.5056 4.3798 39 1 7.7143 -3.0428 2.6852 40 1 8.0270 -1.3993 3.2931 41 1 6.6788 -1.7651 6.0247 42 1 8.1172 -2.3590 6.8891 43 1 8.2621 -1.0003 5.7488 44 1 7.5104 -4.9499 4.2857 45 1 7.6781 -4.6658 6.0346 46 1 6.2397 -4.0716 5.1703 47 1 9.7334 -3.8755 3.8986 48 1 10.0454 -2.2322 4.5075 49 1 12.7570 -4.7780 7.3849 50 1 1.6903 -0.2021 2.1391 51 1 1.6648 -1.7464 1.2546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174271314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -25.370215 kcal Electronic energy + Delta-G solvation = -22825.896047 eV Core-core repulsion = 19758.794891 eV Total energy + Delta-G solvation = -3067.101156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.59253 -37.78400 -35.57176 -33.62247 -32.24668 -32.02128 -28.76584 -27.44029 -26.81493 -26.35832 -25.14060 -23.61345 -22.83939 -21.77498 -20.66326 -19.93695 -17.81498 -16.78199 -16.32756 -15.89780 -15.49296 -14.82739 -14.50063 -14.44164 -14.40614 -14.07493 -13.70920 -13.54218 -13.12681 -12.81850 -12.76451 -12.50589 -12.44836 -12.20461 -12.16044 -11.85569 -11.54315 -11.37188 -11.28476 -11.04735 -10.96614 -10.86038 -10.80079 -10.52705 -10.48192 -10.41944 -10.31307 -9.79850 -9.65885 -9.27648 -8.88688 -8.50543 -8.48372 -8.15851 -5.98638 -3.94693 3.33066 3.40804 3.44555 3.57036 4.37466 4.49560 4.52249 4.53958 4.59070 4.83408 4.95555 5.08662 5.13636 5.16488 5.24340 5.30594 5.34417 5.41760 5.45990 5.47836 5.51051 5.58542 5.64916 5.66848 5.72968 5.78853 5.83554 5.87164 5.90210 5.93727 5.96655 6.13162 6.17197 6.26493 6.43447 6.60818 6.70146 6.81373 6.85716 6.89325 7.09698 7.15437 7.20139 7.31054 7.34775 7.48209 7.63686 7.86930 8.61326 9.07299 9.64524 11.14463 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.002655 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.688764 B =10542.481255 C =11013.554629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.047 3.953 7 N -0.539 5.539 8 C 0.058 3.942 9 C 0.055 3.945 10 N -0.686 5.686 11 C 0.069 3.931 12 C -0.049 4.049 13 C -0.131 4.131 14 C -0.117 4.117 15 C -0.005 4.005 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.062 3.938 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.339 0.661 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.008 0.992 49 H 0.261 0.739 50 H 0.073 0.927 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 9.017 -15.777 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.080 4.080 7 N -0.263 5.263 8 C -0.069 4.069 9 C -0.075 4.075 10 N -0.319 5.319 11 C -0.059 4.059 12 C -0.049 4.049 13 C -0.188 4.188 14 C -0.175 4.175 15 C -0.043 4.043 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.704 3.296 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.158 0.842 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.026 0.974 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.808 8.783 -15.887 27.613 hybrid contribution 0.922 0.195 -0.588 1.111 sum -19.886 8.978 -16.475 27.340 Atomic orbital electron populations 1.21799 0.95038 1.01784 1.01824 1.21168 0.94996 1.00352 0.94345 0.90382 1.21648 0.95759 1.00375 0.97594 1.21598 0.95659 1.01593 0.96717 1.22226 1.00617 0.94993 0.90197 1.61954 1.07824 1.54209 1.02354 1.22046 0.95019 0.98335 0.91536 1.22061 0.93724 0.98014 0.93686 1.60519 1.15068 1.51877 1.04395 1.22119 0.85711 0.98674 0.99438 1.20417 0.97136 0.95312 0.92037 1.21786 0.98397 0.98381 1.00261 1.21610 0.98312 0.95987 1.01564 1.19636 0.90685 0.95977 0.97966 1.21136 0.93957 1.40747 0.98562 0.90416 1.25022 0.98332 0.94953 0.95364 1.69909 1.15126 1.44643 1.24873 0.86844 0.80964 0.77986 0.83844 1.20516 1.21563 1.19139 1.22123 0.87208 0.98910 0.98368 0.92542 0.92501 0.92802 0.92334 0.91930 0.91593 0.91144 0.94891 0.90010 0.90850 0.93906 0.91060 0.94807 0.84150 0.91704 0.95845 0.94557 0.91150 0.94135 0.94283 0.92118 0.93696 0.96732 0.97381 0.92907 0.90856 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.09 -0.67 2.88 -90.54 -0.26 -0.94 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.85 5.29 -26.61 -0.14 -0.99 16 5 C -0.12 -0.94 6.09 -26.65 -0.16 -1.11 16 6 C 0.05 0.45 4.85 -3.83 -0.02 0.43 16 7 N -0.54 -5.42 4.81 -234.66 -1.13 -6.55 16 8 C 0.06 0.63 5.53 -3.82 -0.02 0.61 16 9 C 0.05 0.66 4.93 -3.82 -0.02 0.64 16 10 N -0.69 -9.63 5.71 -113.77 -0.65 -10.28 16 11 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 12 C -0.05 -0.94 0.60 -154.51 -0.09 -1.04 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 14 C -0.12 -2.27 8.06 37.15 0.30 -1.97 16 15 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 16 C -0.51 -14.03 8.20 -34.44 -0.28 -14.31 16 17 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 18 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 19 N -0.91 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.06 0.54 4.71 -3.83 -0.02 0.52 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 37 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.34 4.58 6.77 -39.29 -0.27 4.31 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.04 0.57 6.57 -51.93 -0.34 0.22 16 42 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 46 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 47 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 51 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -29.24 375.85 -10.46 -39.70 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -10.16 Total: -0.51 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.28 Total: -18.14 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -1.00 Total: -43.94 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.24 -10.46 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174271314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.329 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds