Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.50468 * 2 1 4 4 C 1.53119 * 109.53394 * 120.09983 * 2 1 3 5 5 C 1.53122 * 109.16366 * 177.61325 * 4 2 1 6 6 C 1.53039 * 109.27649 * 302.35105 * 5 4 2 7 7 N 1.46845 * 109.52699 * 59.17283 * 6 5 4 8 8 C 1.46901 * 110.99858 * 174.16323 * 7 6 5 9 9 C 1.53004 * 109.46916 * 294.20813 * 8 7 6 10 10 N 1.46901 * 109.46916 * 179.97438 * 9 8 7 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47206 * 299.99787 * 12 11 10 14 14 C 1.53001 * 109.47323 * 60.00045 * 12 11 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47387 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00144 * 0.02562 * 16 15 12 18 18 C 1.37874 * 119.99821 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00108 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47164 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46812 * 120.00223 * 20 18 16 23 23 H 1.48494 * 109.47320 * 240.00038 * 20 18 16 24 24 C 1.46843 * 111.19971 * 298.25972 * 7 6 5 25 25 H 1.09004 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47256 * 300.07449 * 1 2 3 27 27 H 1.09000 * 109.47103 * 60.08109 * 1 2 3 28 28 H 1.08997 * 109.52525 * 297.52059 * 4 2 1 29 29 H 1.08999 * 109.52448 * 57.71281 * 4 2 1 30 30 H 1.09007 * 109.50135 * 62.28386 * 5 4 2 31 31 H 1.08997 * 109.50724 * 182.36485 * 5 4 2 32 32 H 1.09005 * 109.45883 * 299.15253 * 6 5 4 33 33 H 1.09001 * 109.45900 * 179.19575 * 6 5 4 34 34 H 1.08995 * 109.47185 * 174.21521 * 8 7 6 35 35 H 1.08996 * 109.47094 * 54.20445 * 8 7 6 36 36 H 1.09004 * 109.46889 * 60.00381 * 9 8 7 37 37 H 1.08995 * 109.47384 * 300.00021 * 9 8 7 38 38 H 1.00901 * 111.00067 * 303.95263 * 10 9 8 39 39 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 40 40 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 41 41 H 1.08999 * 109.47049 * 60.00315 * 13 12 11 42 42 H 1.09005 * 109.47151 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.47171 * 300.00432 * 13 12 11 44 44 H 1.08991 * 109.46963 * 60.00286 * 14 12 11 45 45 H 1.09005 * 109.47384 * 179.97438 * 14 12 11 46 46 H 1.08999 * 109.47105 * 299.99791 * 14 12 11 47 47 H 1.09001 * 109.46514 * 300.00105 * 15 12 11 48 48 H 1.08998 * 109.46924 * 59.99625 * 15 12 11 49 49 H 0.97004 * 119.99990 * 179.97438 * 19 18 16 50 50 H 1.08994 * 109.46054 * 181.76099 * 24 7 6 51 51 H 1.09000 * 109.45852 * 301.73682 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 1.2485 5 6 3.5719 -0.7711 1.2101 6 6 4.0237 -1.4716 -0.0734 7 7 3.5092 -0.7409 -1.2386 8 6 4.0371 -1.3042 -2.4884 9 6 5.5494 -1.0803 -2.5500 10 7 6.0774 -1.6442 -3.7995 11 6 7.5302 -1.4477 -3.8931 12 6 8.0422 -2.0461 -5.2048 13 6 7.7266 -3.5428 -5.2401 14 6 7.3568 -1.3524 -6.3837 15 6 9.5555 -1.8421 -5.3022 16 6 10.0599 -2.4320 -6.5939 17 1 9.3701 -2.9048 -7.2773 18 6 11.4018 -2.3673 -6.9036 19 7 12.2417 -1.7912 -6.0716 20 14 12.0272 -3.0992 -8.5045 21 1 10.8900 -3.6852 -9.2584 22 1 12.6648 -2.0343 -9.3199 23 1 13.0239 -4.1593 -8.2081 24 6 2.0409 -0.7230 -1.2483 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5150 0.8893 27 1 -0.3633 0.5126 -0.8907 28 1 1.7164 -0.1873 2.1397 29 1 1.6466 -1.7393 1.2687 30 1 3.9680 0.2443 1.2291 31 1 3.9409 -1.3219 2.0752 32 1 3.6388 -2.4914 -0.0852 33 1 5.1128 -1.4943 -0.1107 34 1 3.5622 -0.8128 -3.3375 35 1 3.8264 -2.3731 -2.5226 36 1 6.0243 -1.5717 -1.7008 37 1 5.7601 -0.0114 -2.5157 38 1 5.8386 -2.6208 -3.8847 39 1 7.7550 -0.3814 -3.8684 40 1 8.0185 -1.9416 -3.0530 41 1 6.6487 -3.6885 -5.1707 42 1 8.0910 -3.9690 -6.1749 43 1 8.2149 -4.0370 -4.4003 44 1 7.5816 -0.2862 -6.3586 45 1 7.7219 -1.7784 -7.3183 46 1 6.2788 -1.4981 -6.3143 47 1 9.7806 -0.7759 -5.2768 48 1 10.0435 -2.3366 -4.4623 49 1 13.1859 -1.7460 -6.2894 50 1 1.6900 -0.2020 -2.1390 51 1 1.6653 -1.7462 -1.2545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174271326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -31.653876 kcal Electronic energy + Delta-G solvation = -22727.069901 eV Core-core repulsion = 19659.696265 eV Total energy + Delta-G solvation = -3067.373636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.51341 -37.65853 -35.45250 -33.60177 -32.26228 -31.98430 -28.57298 -26.88788 -26.75758 -26.30104 -25.09441 -23.61293 -22.68203 -22.03235 -20.85036 -19.91994 -17.81038 -16.26557 -16.20697 -15.83911 -15.28415 -14.84057 -14.60846 -14.58232 -14.36852 -13.95639 -13.72298 -13.41052 -13.08628 -12.83056 -12.61136 -12.39098 -12.32354 -12.11384 -11.98157 -11.78493 -11.38308 -11.31278 -11.26528 -10.97060 -10.90494 -10.76778 -10.72480 -10.51883 -10.50816 -10.45812 -10.22430 -10.06725 -9.65227 -8.99357 -8.79565 -8.50598 -8.30027 -8.04051 -5.94269 -3.94196 3.33728 3.41510 3.45071 3.58572 4.40308 4.49465 4.54561 4.57907 4.68451 4.83680 5.06186 5.08431 5.17919 5.19279 5.26662 5.31971 5.41571 5.41659 5.47630 5.49728 5.54000 5.67138 5.71993 5.74946 5.79043 5.81306 5.86393 5.95227 5.98537 6.00872 6.06477 6.16407 6.28930 6.37391 6.54172 6.69401 6.81403 6.85818 6.91534 6.92940 7.23733 7.26291 7.29404 7.43682 7.69982 7.74324 7.88611 8.06342 8.50879 9.11461 9.68494 11.17441 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.045791 B = 0.002459 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.330836 B =11385.591827 C =11663.535957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.051 3.949 7 N -0.538 5.538 8 C 0.060 3.940 9 C 0.062 3.938 10 N -0.687 5.687 11 C 0.072 3.928 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.053 3.947 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.063 3.937 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.335 0.665 39 H 0.066 0.934 40 H 0.022 0.978 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 50 H 0.074 0.926 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.787 1.476 13.578 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.077 4.077 7 N -0.262 5.262 8 C -0.068 4.068 9 C -0.068 4.068 10 N -0.319 5.319 11 C -0.056 4.056 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.065 4.065 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -21.590 2.558 13.258 25.464 hybrid contribution 0.629 -1.884 -0.220 1.999 sum -20.960 0.673 13.038 24.694 Atomic orbital electron populations 1.21797 0.95054 1.01717 1.01856 1.21174 0.94981 1.00453 0.94307 0.90274 1.21646 0.95730 1.00304 0.97654 1.21589 0.95666 1.01701 0.96583 1.22167 1.00443 0.94729 0.90361 1.61813 1.07725 1.54398 1.02296 1.22043 0.95875 0.97208 0.91684 1.21908 0.93125 1.01028 0.90692 1.60500 1.14284 1.22180 1.34934 1.22087 0.85201 1.00670 0.97662 1.20628 0.98701 0.93995 0.92547 1.21772 0.98023 0.96615 1.02214 1.21595 0.98252 0.99342 0.98125 1.19134 0.87449 0.96950 0.96938 1.21276 0.92472 1.36321 1.04271 0.92240 1.25027 0.97234 0.95722 0.96728 1.69978 1.03067 1.44579 1.36129 0.86605 0.78856 0.78876 0.84076 1.19784 1.21163 1.21224 1.22115 0.87193 0.98754 0.98468 0.92876 0.92495 0.92509 0.91905 0.92421 0.91008 0.91637 0.95198 0.90353 0.89870 0.95268 0.95801 0.90420 0.84592 0.91525 0.95979 0.94862 0.91710 0.94162 0.94158 0.92724 0.93903 0.96645 0.96940 0.93243 0.90715 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.09 -0.70 2.88 -90.54 -0.26 -0.96 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -0.86 5.29 -26.61 -0.14 -1.00 16 5 C -0.12 -0.96 6.09 -26.65 -0.16 -1.13 16 6 C 0.05 0.49 5.29 -3.83 -0.02 0.47 16 7 N -0.54 -5.59 4.66 -234.67 -1.09 -6.68 16 8 C 0.06 0.67 5.22 -3.82 -0.02 0.65 16 9 C 0.06 0.80 5.61 -3.82 -0.02 0.78 16 10 N -0.69 -10.14 5.71 -113.78 -0.65 -10.79 16 11 C 0.07 1.28 4.65 -3.82 -0.02 1.26 16 12 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 13 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 14 C -0.12 -2.28 8.07 37.16 0.30 -1.98 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 16 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C 0.06 0.56 4.74 -3.84 -0.02 0.54 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.80 6.21 -51.93 -0.32 0.48 16 34 H 0.08 0.96 7.99 -51.93 -0.41 0.54 16 35 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.02 0.31 6.43 -51.93 -0.33 -0.03 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.34 4.74 6.77 -39.29 -0.27 4.47 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 42 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 46 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 51 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -28.90 380.55 -10.81 -39.70 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -10.22 Total: -1.01 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.29 Total: -17.37 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -1.01 Total: -43.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.90 -10.81 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174271326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds